Wall clock time and date at job start Tue Mar 31 2020 23:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 119.99755 * 2 1 4 4 C 1.50703 * 109.47289 * 270.00096 * 3 2 1 5 5 H 1.07994 * 119.99399 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46632 * 90.00476 * 8 6 4 10 10 H 1.48496 * 109.46690 * 210.00029 * 8 6 4 11 11 H 1.48498 * 109.47171 * 330.00226 * 8 6 4 12 12 C 1.39673 * 120.00285 * 180.02562 * 2 1 3 13 13 C 1.38912 * 120.07371 * 179.71933 * 12 2 1 14 14 C 1.38107 * 119.92242 * 179.77037 * 13 12 2 15 15 C 1.38287 * 120.07758 * 0.50876 * 14 13 12 16 16 C 1.50697 * 119.92831 * 179.76659 * 15 14 13 17 17 N 1.46902 * 109.47153 * 269.98106 * 16 15 14 18 18 C 1.46847 * 111.00041 * 294.20925 * 17 16 15 19 19 C 1.53030 * 109.52441 * 174.16006 * 18 17 16 20 20 C 1.53121 * 109.27917 * 59.17862 * 19 18 17 21 21 H 1.08994 * 109.51912 * 62.24955 * 20 19 18 22 22 O 1.42897 * 109.57802 * 182.41103 * 20 19 18 23 23 C 1.53116 * 109.16007 * 302.34610 * 20 19 18 24 24 F 1.39898 * 109.50720 * 297.71167 * 23 20 19 25 25 F 1.39901 * 109.50287 * 177.59224 * 23 20 19 26 26 C 1.46842 * 111.00044 * 169.99657 * 17 16 15 27 27 C 1.38289 * 120.14534 * 359.74894 * 15 14 13 28 28 C 1.38100 * 120.07703 * 359.97438 * 27 15 14 29 29 H 1.08999 * 109.46923 * 90.00257 * 1 2 3 30 30 H 1.08997 * 109.46694 * 209.99389 * 1 2 3 31 31 H 1.08995 * 109.47258 * 329.99665 * 1 2 3 32 32 H 1.09001 * 109.47060 * 30.00546 * 3 2 1 33 33 H 1.09004 * 109.47073 * 150.00035 * 3 2 1 34 34 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 35 35 H 1.08000 * 120.03937 * 0.02562 * 13 12 2 36 36 H 1.08005 * 119.96225 * 180.25637 * 14 13 12 37 37 H 1.09003 * 109.46775 * 29.98260 * 16 15 14 38 38 H 1.08995 * 109.47074 * 149.97902 * 16 15 14 39 39 H 1.08998 * 109.46364 * 294.17598 * 18 17 16 40 40 H 1.09001 * 109.46002 * 54.14405 * 18 17 16 41 41 H 1.09002 * 109.50737 * 299.24097 * 19 18 17 42 42 H 1.08997 * 109.53872 * 179.14146 * 19 18 17 43 43 H 0.96703 * 114.00003 * 299.71908 * 22 20 19 44 44 H 1.08998 * 109.46365 * 305.85915 * 26 17 16 45 45 H 1.09007 * 109.45990 * 65.82199 * 26 17 16 46 46 H 1.08000 * 119.96160 * 180.02562 * 27 15 14 47 47 H 1.08001 * 120.04187 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1259 2.8781 -1.6727 7 7 3.5531 3.6183 -0.6730 8 14 3.4378 3.4171 -3.4339 9 1 2.3076 4.2594 -3.9012 10 1 4.6977 4.2006 -3.4958 11 1 3.5560 2.2198 -4.3043 12 6 2.1634 -1.2096 -0.0005 13 6 3.5525 -1.2113 -0.0064 14 6 4.2400 -2.4091 -0.0022 15 6 3.5471 -3.6059 -0.0026 16 6 4.3006 -4.9109 -0.0033 17 7 4.5450 -5.3346 -1.3885 18 6 3.2846 -5.6525 -2.0717 19 6 3.5630 -5.9479 -3.5472 20 6 4.5338 -7.1273 -3.6522 21 1 4.0760 -8.0157 -3.2172 22 8 4.8422 -7.3728 -5.0258 23 6 5.8192 -6.7895 -2.8918 24 9 6.4327 -5.6790 -3.4815 25 9 6.6898 -7.8837 -2.9368 26 6 5.4754 -6.4697 -1.4353 27 6 2.1642 -3.6077 -0.0022 28 6 1.4705 -2.4136 -0.0007 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5139 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1385 0.5138 34 1 4.0299 4.4442 -0.8502 35 1 4.0943 -0.2770 -0.0102 36 1 5.3200 -2.4112 -0.0025 37 1 5.2532 -4.7806 0.5103 38 1 3.7118 -5.6707 0.5105 39 1 2.8295 -6.5266 -1.6060 40 1 2.6049 -4.8040 -1.9931 41 1 4.0055 -5.0695 -4.0170 42 1 2.6297 -6.1988 -4.0512 43 1 4.0726 -7.5933 -5.5683 44 1 6.3867 -6.2148 -0.8945 45 1 5.0100 -7.3400 -0.9724 46 1 1.6261 -4.5441 -0.0021 47 1 0.3905 -2.4156 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826958768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:13 Heat of formation + Delta-G solvation = -107.229681 kcal Electronic energy + Delta-G solvation = -30104.660562 eV Core-core repulsion = 25730.127865 eV Total energy + Delta-G solvation = -4374.532697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.00675 -47.00872 -39.61626 -38.63891 -37.05100 -35.57688 -32.86440 -32.27237 -30.85051 -30.42708 -29.33372 -27.84351 -26.32976 -24.67947 -23.81579 -23.12795 -22.05463 -21.49205 -20.41008 -19.65402 -17.97989 -17.65662 -16.97151 -16.79794 -16.53600 -16.29631 -15.63968 -15.36377 -15.06030 -14.72541 -14.40094 -14.20416 -13.94258 -13.85548 -13.72633 -13.64334 -13.50696 -13.32082 -13.02763 -12.96156 -12.64911 -12.28118 -12.13802 -12.04223 -11.86160 -11.65652 -11.50387 -11.47646 -11.26260 -10.97618 -10.78832 -10.71327 -10.66752 -10.43061 -10.26932 -9.93672 -9.77480 -8.90833 -8.55967 -8.51263 -8.31056 -6.50971 -6.03907 -4.18322 2.04561 2.11093 3.16831 3.26624 3.33864 3.38758 3.49735 3.77838 3.78151 4.10684 4.16358 4.40512 4.42463 4.55075 4.60899 4.79105 4.89248 5.02055 5.11993 5.18261 5.20844 5.23897 5.33082 5.37462 5.47338 5.51340 5.62532 5.73510 5.77734 5.92266 5.96777 6.07099 6.24534 6.31590 6.37656 6.57425 6.68941 6.75057 6.92786 6.97532 7.10123 7.15290 7.22635 7.32911 7.54501 7.79992 8.13550 8.22553 8.43656 8.90288 9.48759 10.94748 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.002828 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.220438 B = 9898.145306 C =10947.103802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.244 3.756 13 C -0.187 4.187 14 C -0.048 4.048 15 C -0.172 4.172 16 C 0.115 3.885 17 N -0.526 5.526 18 C 0.049 3.951 19 C -0.151 4.151 20 C 0.068 3.932 21 H 0.079 0.921 22 O -0.552 6.552 23 C 0.307 3.693 24 F -0.178 7.178 25 F -0.197 7.197 26 C 0.019 3.981 27 C -0.068 4.068 28 C -0.223 4.223 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.386 0.614 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 -22.496 -0.076 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 C 0.137 3.863 13 C -0.210 4.210 14 C -0.067 4.067 15 C -0.175 4.175 16 C -0.011 4.011 17 N -0.251 5.251 18 C -0.079 4.079 19 C -0.189 4.189 20 C 0.007 3.993 21 H 0.097 0.903 22 O -0.358 6.358 23 C 0.270 3.730 24 F -0.159 7.159 25 F -0.178 7.178 26 C -0.111 4.111 27 C -0.087 4.087 28 C -0.246 4.246 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.234 0.766 44 H 0.123 0.877 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.188 -21.572 -0.075 21.605 hybrid contribution -0.646 -0.289 -0.936 1.174 sum -1.834 -21.861 -1.011 21.961 Atomic orbital electron populations 1.21462 0.81486 1.01010 1.00456 1.47126 1.04414 1.04703 1.75755 1.19315 0.92086 0.78627 0.97059 1.21559 1.36429 1.06420 0.92621 0.92270 1.24954 0.95355 0.96283 0.97427 1.69926 1.38359 1.14356 1.30779 0.86525 0.77708 0.78742 0.84708 1.20646 1.21037 1.19728 1.17960 0.91528 0.85941 0.90891 1.20911 0.92649 0.98879 1.08527 1.20646 0.98833 0.91269 0.95990 1.19032 0.93041 0.93467 1.11969 1.20825 0.99635 0.94171 0.86423 1.61868 1.12434 1.33127 1.17659 1.22232 0.91819 1.01194 0.92610 1.22340 0.99355 0.99206 0.97957 1.22825 0.93728 0.98627 0.84080 0.90339 1.86580 1.37887 1.92626 1.18740 1.20933 0.84667 0.73802 0.93634 1.93056 1.84387 1.52888 1.85583 1.93012 1.72430 1.55067 1.97298 1.22955 1.00199 0.95071 0.92855 1.20488 0.93218 0.96461 0.98560 1.20512 0.98950 0.91362 1.13757 0.94071 0.92836 0.92018 0.95207 0.94602 0.92626 0.84992 0.86930 0.90155 0.94360 0.94556 0.88037 0.88794 0.89794 0.76589 0.87659 0.91836 0.87725 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.23 59.85 0.61 2.31 16 2 N -0.61 -12.82 2.99 -181.00 -0.54 -13.36 16 3 C 0.25 6.15 4.95 -5.19 -0.03 6.12 16 4 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -25.57 13.29 55.43 0.74 -24.84 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.24 4.75 6.55 -83.79 -0.55 4.21 16 13 C -0.19 -3.68 9.21 -39.38 -0.36 -4.04 16 14 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 15 C -0.17 -2.44 4.89 -104.59 -0.51 -2.95 16 16 C 0.12 1.28 5.12 -4.98 -0.03 1.25 16 17 N -0.53 -5.91 4.58 -236.12 -1.08 -6.99 16 18 C 0.05 0.49 5.15 -3.84 -0.02 0.47 16 19 C -0.15 -1.40 5.60 -26.65 -0.15 -1.55 16 20 C 0.07 0.64 3.09 -26.61 -0.08 0.56 16 21 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 22 O -0.55 -5.53 13.22 -35.23 -0.47 -6.00 16 23 C 0.31 3.58 1.83 -26.65 -0.05 3.53 16 24 F -0.18 -2.67 16.51 2.25 0.04 -2.64 16 25 F -0.20 -2.47 17.04 2.25 0.04 -2.44 16 26 C 0.02 0.18 4.95 -3.84 -0.02 0.16 16 27 C -0.07 -0.95 7.86 -39.61 -0.31 -1.26 16 28 C -0.22 -3.61 9.21 -39.38 -0.36 -3.98 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.76 6.20 -51.93 -0.32 0.44 16 31 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 32 H 0.03 0.77 7.89 -51.93 -0.41 0.36 16 33 H 0.04 0.94 6.21 -51.93 -0.32 0.61 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.13 2.91 6.15 -52.49 -0.32 2.58 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 39 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 1.16 5.75 -51.93 -0.30 0.86 16 41 H 0.09 1.13 7.91 -51.93 -0.41 0.71 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.39 1.90 9.09 45.56 0.41 2.31 16 44 H 0.11 0.97 8.02 -51.93 -0.42 0.55 16 45 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 46 H 0.10 1.18 7.95 -52.49 -0.42 0.76 16 47 H 0.11 1.64 6.14 -52.49 -0.32 1.32 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -31.61 381.74 -9.35 -40.96 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.15 Total: 2.68 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.66 Total: -9.50 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.89 Total: -45.19 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.47 Total: -6.00 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.08 Total: -5.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.61 -9.35 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826958768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.269 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds