Wall clock time and date at job start Wed Apr 1 2020 00:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99356 * 2 1 4 4 O 1.20824 * 120.00434 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99625 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.47027 * 179.97438 * 5 3 2 7 7 C 1.36930 * 120.00169 * 264.01706 * 6 5 3 8 8 H 1.08001 * 119.99955 * 196.12160 * 7 6 5 9 9 C 1.38809 * 120.00125 * 16.12357 * 7 6 5 10 10 N 1.31618 * 120.00160 * 22.21339 * 9 7 6 11 11 Si 1.86800 * 120.00120 * 202.21259 * 9 7 6 12 12 H 1.48499 * 109.47234 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47151 * 119.99959 * 11 9 7 14 14 H 1.48503 * 109.47373 * 240.00070 * 11 9 7 15 15 C 1.46502 * 119.99732 * 84.01450 * 6 5 3 16 16 C 1.53002 * 109.46916 * 90.00199 * 15 6 5 17 17 H 1.09001 * 110.46484 * 307.62532 * 16 15 6 18 18 C 1.54093 * 110.52194 * 185.00029 * 16 15 6 19 19 N 1.47086 * 103.77717 * 241.22948 * 18 16 15 20 20 C 1.46504 * 125.56330 * 179.97438 * 19 18 16 21 21 C 1.52992 * 109.47205 * 240.00158 * 20 19 18 22 22 C 1.53002 * 109.46809 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.47003 * 60.00307 * 22 21 20 24 24 C 1.52999 * 109.46811 * 299.99624 * 23 22 21 25 25 C 1.53000 * 109.46803 * 119.99962 * 20 19 18 26 26 C 1.34013 * 108.87999 * 0.02562 * 19 18 16 27 27 O 1.21515 * 123.06737 * 179.73597 * 26 19 18 28 28 O 1.33765 * 113.85735 * 359.97438 * 26 19 18 29 29 H 1.09005 * 109.46786 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47013 * 299.99349 * 1 2 3 31 31 H 1.08997 * 109.47522 * 59.99882 * 1 2 3 32 32 H 1.09001 * 109.47261 * 60.00229 * 5 3 2 33 33 H 1.08995 * 109.47010 * 299.99943 * 5 3 2 34 34 H 0.96996 * 120.00310 * 179.97438 * 10 9 7 35 35 H 1.08996 * 109.47322 * 330.00375 * 15 6 5 36 36 H 1.09003 * 109.47002 * 210.00067 * 15 6 5 37 37 H 1.08992 * 110.56608 * 122.65407 * 18 16 15 38 38 H 1.09003 * 110.56314 * 359.79996 * 18 16 15 39 39 H 1.09000 * 109.46822 * 0.02562 * 20 19 18 40 40 H 1.09000 * 109.47192 * 299.99727 * 21 20 19 41 41 H 1.08996 * 109.47625 * 60.00121 * 21 20 19 42 42 H 1.09000 * 109.47258 * 299.99978 * 22 21 20 43 43 H 1.09002 * 109.47273 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.46940 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47383 * 59.99747 * 23 22 21 46 46 H 1.09000 * 109.47248 * 300.00206 * 24 23 22 47 47 H 1.09001 * 109.46910 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.46967 * 300.00001 * 25 20 19 49 49 H 1.09000 * 109.47309 * 60.00447 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 -0.0006 6 7 3.9815 2.6800 -0.0011 7 6 4.2937 3.3012 -1.1807 8 1 4.8404 4.2326 -1.1723 9 6 3.9076 2.7340 -2.3873 10 7 2.9057 1.8811 -2.4228 11 14 4.8097 3.1811 -3.9608 12 1 5.8893 4.1533 -3.6532 13 1 5.4019 1.9567 -4.5568 14 1 3.8554 3.7884 -4.9230 15 6 4.0628 3.4202 1.2606 16 6 5.4669 3.2712 1.8497 17 1 5.7435 2.2189 1.9143 18 6 5.5437 3.9360 3.2378 19 7 6.5614 4.9843 3.0683 20 6 7.0095 5.9130 4.1090 21 6 6.7316 7.3501 3.6641 22 6 7.1991 8.3199 4.7513 23 6 8.7004 8.1395 4.9845 24 6 8.9783 6.7022 5.4294 25 6 8.5109 5.7323 4.3416 26 6 7.0112 4.9521 1.8063 27 8 7.8581 5.7146 1.3847 28 8 6.4389 4.0072 1.0520 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.9557 0.7812 -0.8908 33 1 3.9563 0.7808 0.8891 34 1 2.6356 1.4850 -3.2660 35 1 3.3301 3.0227 1.9629 36 1 3.8556 4.4745 1.0772 37 1 5.8592 3.2142 3.9910 38 1 4.5826 4.3751 3.5056 39 1 6.4716 5.7083 5.0347 40 1 7.2699 7.5545 2.7386 41 1 5.6621 7.4789 3.4984 42 1 6.6605 8.1154 5.6766 43 1 7.0007 9.3439 4.4346 44 1 9.0333 8.8300 5.7593 45 1 9.2390 8.3440 4.0592 46 1 8.4397 6.4977 6.3547 47 1 10.0478 6.5738 5.5959 48 1 8.7088 4.7083 4.6586 49 1 9.0492 5.9366 3.4161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827974942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:05 Heat of formation + Delta-G solvation = -158.306994 kcal Electronic energy + Delta-G solvation = -31340.111763 eV Core-core repulsion = 27074.451703 eV Total energy + Delta-G solvation = -4265.660060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.57021 -40.78535 -39.52020 -38.34318 -37.54655 -36.41770 -35.79669 -33.72504 -31.80794 -31.68755 -30.49846 -29.51178 -27.64208 -26.94159 -24.46626 -24.29847 -23.52924 -23.05158 -21.78844 -21.35771 -20.40975 -19.02052 -18.33559 -18.08061 -17.80453 -17.45820 -17.12789 -16.79759 -16.57664 -16.13094 -15.97784 -15.61528 -15.28491 -15.14602 -15.02322 -14.75937 -14.59499 -14.37424 -14.00764 -13.89405 -13.63193 -13.38425 -13.23146 -13.15308 -13.09140 -12.75781 -12.69235 -12.60507 -12.49525 -12.27011 -12.07887 -12.01513 -11.93729 -11.70213 -11.61648 -11.36819 -11.34320 -11.20913 -11.09569 -11.03160 -10.55170 -9.78540 -8.99522 -7.99278 -5.30685 1.40657 1.45381 1.56474 1.60142 1.76803 1.98390 2.31323 2.53392 2.67727 3.16243 3.29302 3.57751 3.69927 3.78317 3.93368 3.99611 4.03503 4.24749 4.30140 4.36268 4.41606 4.48203 4.48741 4.53484 4.54275 4.57984 4.61566 4.64380 4.68279 4.74359 4.80475 4.92609 4.95262 5.10363 5.11510 5.15704 5.19054 5.28122 5.29180 5.31799 5.39837 5.54042 5.64784 5.66984 5.95510 6.20215 6.54572 7.01899 7.09382 7.48498 7.75843 8.09397 9.09035 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.003092 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.153133 B = 9054.608139 C =10304.194310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.383 6.383 3 C 0.467 3.533 4 O -0.545 6.545 5 C 0.185 3.815 6 N -0.575 5.575 7 C -0.243 4.243 8 H 0.063 0.937 9 C -0.041 4.041 10 N -0.923 5.923 11 Si 0.955 3.045 12 H -0.283 1.283 13 H -0.281 1.281 14 H -0.298 1.298 15 C 0.142 3.858 16 C 0.052 3.948 17 H 0.127 0.873 18 C 0.078 3.922 19 N -0.622 5.622 20 C 0.179 3.821 21 C -0.138 4.138 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.134 4.134 26 C 0.630 3.370 27 O -0.577 6.577 28 O -0.338 6.338 29 H 0.125 0.875 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.038 0.962 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.040 0.960 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.562 1.368 22.034 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.300 6.300 3 C 0.309 3.691 4 O -0.433 6.433 5 C 0.056 3.944 6 N -0.294 5.294 7 C -0.373 4.373 8 H 0.080 0.920 9 C -0.236 4.236 10 N -0.570 5.570 11 Si 0.785 3.215 12 H -0.208 1.208 13 H -0.208 1.208 14 H -0.226 1.226 15 C 0.016 3.984 16 C -0.005 4.005 17 H 0.145 0.855 18 C -0.044 4.044 19 N -0.369 5.369 20 C 0.079 3.921 21 C -0.176 4.176 22 C -0.145 4.145 23 C -0.161 4.161 24 C -0.144 4.144 25 C -0.172 4.172 26 C 0.385 3.615 27 O -0.466 6.466 28 O -0.247 6.247 29 H 0.144 0.856 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.057 0.943 37 H 0.149 0.851 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.725 1.920 21.439 22.037 hybrid contribution -0.178 0.477 -2.083 2.144 sum 4.547 2.396 19.356 20.027 Atomic orbital electron populations 1.23167 0.77484 1.04175 1.00771 1.86505 1.23203 1.35232 1.85092 1.25729 0.94040 0.80208 0.69136 1.90452 1.67650 1.37832 1.47409 1.20448 0.84893 0.86154 1.02907 1.44050 1.74792 1.07763 1.02807 1.19311 1.27288 1.06506 0.84217 0.91961 1.25290 0.97598 1.00814 0.99935 1.69985 1.26074 1.35382 1.25595 0.85392 0.78140 0.77414 0.80545 1.20812 1.20761 1.22609 1.21270 0.92651 0.96329 0.88146 1.24996 0.89891 0.97489 0.88140 0.85530 1.23106 0.93801 0.90735 0.96778 1.48414 1.41835 1.36731 1.09914 1.21143 0.95609 0.86644 0.88742 1.21954 1.00991 0.95041 0.99654 1.21461 0.96261 0.98326 0.98425 1.21593 0.96059 0.97421 1.01075 1.21471 1.01722 0.93449 0.97790 1.21942 0.94920 1.00687 0.99669 1.19016 0.80755 0.80340 0.81396 1.90906 1.35487 1.43379 1.76853 1.87460 1.53158 1.45503 1.38612 0.85648 0.92551 0.94955 0.89021 0.87991 0.94065 0.88914 0.94333 0.85117 0.87133 0.85123 0.94199 0.92019 0.89339 0.91686 0.89946 0.94127 0.89310 0.91218 0.91006 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.56 113.37 1.20 2.41 16 2 O -0.38 -15.21 10.57 -51.47 -0.54 -15.76 16 3 C 0.47 21.23 6.18 71.24 0.44 21.67 16 4 O -0.55 -28.61 15.89 21.97 0.35 -28.26 16 5 C 0.18 7.88 5.49 85.63 0.47 8.35 16 6 N -0.58 -26.51 2.03 -706.34 -1.43 -27.95 16 7 C -0.24 -13.31 9.46 84.03 0.80 -12.52 16 8 H 0.06 3.62 7.92 -2.91 -0.02 3.59 16 9 C -0.04 -2.30 4.86 84.86 0.41 -1.89 16 10 N -0.92 -52.72 9.31 21.65 0.20 -52.51 16 11 Si 0.96 47.07 29.61 68.60 2.03 49.10 16 12 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 14 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 15 C 0.14 5.08 5.19 86.38 0.45 5.53 16 16 C 0.05 1.50 4.10 30.96 0.13 1.63 16 17 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 18 C 0.08 1.47 7.31 86.64 0.63 2.10 16 19 N -0.62 -15.81 2.85 -927.36 -2.64 -18.45 16 20 C 0.18 3.50 2.78 44.99 0.13 3.62 16 21 C -0.14 -3.07 5.22 30.59 0.16 -2.91 16 22 C -0.11 -1.64 5.92 30.60 0.18 -1.45 16 23 C -0.12 -1.88 5.92 30.60 0.18 -1.70 16 24 C -0.11 -1.46 5.92 30.61 0.18 -1.28 16 25 C -0.13 -2.67 5.22 30.61 0.16 -2.51 16 26 C 0.63 23.56 8.31 129.91 1.08 24.64 16 27 O -0.58 -25.84 15.05 19.64 0.30 -25.55 16 28 O -0.34 -13.56 10.60 -47.26 -0.50 -14.06 16 29 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 30 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.03 1.16 8.13 -2.39 -0.02 1.14 16 32 H 0.09 4.43 6.35 -2.39 -0.02 4.41 16 33 H 0.10 3.26 8.12 -2.39 -0.02 3.24 16 34 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 36 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 37 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 1.66 7.73 -2.39 -0.02 1.64 16 39 H 0.13 1.54 8.10 -2.39 -0.02 1.52 16 40 H 0.04 1.23 6.79 -2.39 -0.02 1.22 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.04 1.17 6.81 -2.39 -0.02 1.15 16 Total: -1.00 -81.00 391.76 5.28 -75.72 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.93 Total: 12.03 kcal Atomic # 6 Polarization: 39.10 SS G_CDS: 6.59 Total: 45.69 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -3.87 Total: -98.91 kcal Atomic # 8 Polarization: -83.23 SS G_CDS: -0.40 Total: -83.63 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -81.00 5.28 -75.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827974942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.592 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds