Wall clock time and date at job start Wed Apr 1 2020 00:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34225 * 116.99846 * 2 1 4 4 O 1.20828 * 120.00521 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99964 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47155 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.47106 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99715 * 270.00287 * 7 6 5 9 9 H 1.07997 * 119.99679 * 145.34543 * 8 7 6 10 10 C 1.38948 * 120.00181 * 325.33752 * 8 7 6 11 11 N 1.31420 * 119.99870 * 337.21831 * 10 8 7 12 12 Si 1.86798 * 120.00146 * 157.20919 * 10 8 7 13 13 H 1.48502 * 109.47119 * 90.00294 * 12 10 8 14 14 H 1.48502 * 109.47461 * 210.00461 * 12 10 8 15 15 H 1.48500 * 109.47122 * 330.00702 * 12 10 8 16 16 C 1.34772 * 120.00192 * 90.00180 * 7 6 5 17 17 O 1.21302 * 119.99792 * 4.88241 * 16 7 6 18 18 C 1.50698 * 120.00293 * 184.88552 * 16 7 6 19 19 N 1.46499 * 109.47091 * 179.70199 * 18 16 7 20 20 C 1.34776 * 119.99634 * 179.97438 * 19 18 16 21 21 O 1.21276 * 120.00303 * 0.02562 * 20 19 18 22 22 C 1.50705 * 119.99834 * 179.97438 * 20 19 18 23 23 C 1.52993 * 109.46997 * 60.00327 * 22 20 19 24 24 C 1.53002 * 109.47196 * 179.97438 * 23 22 20 25 25 C 1.53003 * 109.47186 * 300.00098 * 24 23 22 26 26 C 1.53007 * 109.47040 * 59.99720 * 25 24 23 27 27 C 1.52997 * 109.46972 * 180.02562 * 22 20 19 28 28 H 1.09001 * 109.46595 * 299.99833 * 1 2 3 29 29 H 1.08996 * 109.47537 * 59.99302 * 1 2 3 30 30 H 1.08996 * 109.46868 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47057 * 60.00527 * 5 3 2 32 32 H 1.08992 * 109.47258 * 300.00294 * 5 3 2 33 33 H 1.08997 * 109.47216 * 60.00306 * 6 5 3 34 34 H 1.09005 * 109.47498 * 300.00213 * 6 5 3 35 35 H 0.96998 * 119.99504 * 185.00791 * 11 10 8 36 36 H 1.08997 * 109.47008 * 59.70285 * 18 16 7 37 37 H 1.09001 * 109.46736 * 299.70044 * 18 16 7 38 38 H 0.96994 * 120.00648 * 0.02562 * 19 18 16 39 39 H 1.09001 * 109.47131 * 300.00155 * 22 20 19 40 40 H 1.08996 * 109.47572 * 300.00082 * 23 22 20 41 41 H 1.09001 * 109.47321 * 59.99944 * 23 22 20 42 42 H 1.08997 * 109.47197 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.46963 * 59.99808 * 24 23 22 44 44 H 1.09001 * 109.47375 * 300.00030 * 25 24 23 45 45 H 1.09003 * 109.47161 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47087 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.46784 * 59.99948 * 26 25 24 48 48 H 1.09001 * 109.47342 * 300.00084 * 27 22 20 49 49 H 1.09005 * 109.47451 * 60.00201 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4632 2.8188 -0.0010 8 6 6.1487 2.8537 1.1858 9 1 7.1116 2.3715 1.2675 10 6 5.6047 3.5095 2.2833 11 7 4.7021 4.4483 2.1069 12 14 6.1561 3.0568 4.0097 13 1 7.3170 3.8988 4.3953 14 1 5.0401 3.2862 4.9621 15 1 6.5499 1.6253 4.0441 16 6 6.1352 2.8550 -1.1687 17 8 5.5272 2.9136 -2.2167 18 6 7.6418 2.8227 -1.1724 19 7 8.1277 2.8650 -2.5538 20 6 9.4521 2.8465 -2.8030 21 8 10.2415 2.7944 -1.8839 22 6 9.9520 2.8895 -4.2241 23 6 9.4673 4.1754 -4.8966 24 6 9.9754 4.2193 -6.3391 25 6 11.5051 4.1875 -6.3423 26 6 11.9898 2.9015 -5.6697 27 6 11.4817 2.8568 -4.2278 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.9557 0.7810 -0.8909 32 1 3.9564 0.7806 0.8890 33 1 3.6108 3.2356 0.8907 34 1 3.6100 3.2369 -0.8893 35 1 4.3757 4.9560 2.8661 36 1 7.9867 1.9061 -0.6938 37 1 8.0250 3.6844 -0.6259 38 1 7.4965 2.9071 -3.2890 39 1 9.5692 2.0273 -4.7702 40 1 8.3776 4.1983 -4.8940 41 1 9.8501 5.0376 -4.3505 42 1 9.6304 5.1356 -6.8181 43 1 9.5929 3.3571 -6.8854 44 1 11.8876 5.0496 -5.7959 45 1 11.8670 4.2183 -7.3700 46 1 13.0796 2.8786 -5.6724 47 1 11.6073 2.0393 -6.2161 48 1 11.8649 3.7187 -3.6816 49 1 11.8267 1.9404 -3.7488 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871339050.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:49 Heat of formation + Delta-G solvation = -198.376747 kcal Electronic energy + Delta-G solvation = -30059.252309 eV Core-core repulsion = 25791.854694 eV Total energy + Delta-G solvation = -4267.397614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.61055 -41.30743 -40.38487 -38.47868 -37.69420 -36.99635 -35.42461 -33.88176 -32.76373 -32.08142 -31.59785 -29.17967 -28.26995 -26.98705 -25.13644 -24.05710 -23.36931 -21.83214 -21.39963 -21.15732 -20.59276 -19.32351 -18.73313 -18.01589 -17.70689 -17.64080 -17.35883 -16.92841 -16.73628 -16.20175 -16.16882 -15.80955 -15.34446 -15.07510 -14.97674 -14.94575 -14.78820 -14.32519 -14.14548 -13.93194 -13.78981 -13.56454 -13.31214 -13.20241 -13.09692 -13.05490 -12.93295 -12.72326 -12.60340 -12.20882 -12.12879 -12.01205 -11.96778 -11.80305 -11.63040 -11.52958 -11.32479 -11.16323 -10.98548 -10.70050 -10.55279 -10.13878 -9.61114 -8.37080 -6.12310 1.11985 1.38828 1.49046 1.58320 1.61751 1.63183 1.87044 2.11586 2.32694 2.95433 2.99114 3.63549 3.76669 3.80839 3.81805 4.01302 4.15977 4.25664 4.29566 4.30815 4.31319 4.32466 4.36663 4.46871 4.49305 4.57793 4.58548 4.62280 4.63329 4.68890 4.74118 4.93028 4.99801 5.14840 5.19906 5.25625 5.27987 5.28292 5.31491 5.36590 5.39336 5.43259 5.52265 5.59150 5.86069 6.31087 6.56767 6.68716 7.02218 7.21154 7.42459 7.83043 8.64864 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.002744 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.219246 B =10200.841325 C =11939.612571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.114 4.114 6 C 0.127 3.873 7 N -0.437 5.437 8 C -0.368 4.368 9 H 0.107 0.893 10 C 0.010 3.990 11 N -0.885 5.885 12 Si 0.979 3.021 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.253 1.253 16 C 0.457 3.543 17 O -0.620 6.620 18 C 0.130 3.870 19 N -0.710 5.710 20 C 0.511 3.489 21 O -0.584 6.584 22 C -0.096 4.096 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.113 4.113 27 C -0.097 4.097 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.275 0.725 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.413 0.587 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.051 0.949 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.939 -7.002 -11.240 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.152 4.152 6 C 0.003 3.997 7 N -0.154 5.154 8 C -0.495 4.495 9 H 0.124 0.876 10 C -0.195 4.195 11 N -0.521 5.521 12 Si 0.802 3.198 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.177 1.177 16 C 0.246 3.754 17 O -0.508 6.508 18 C 0.003 3.997 19 N -0.364 5.364 20 C 0.299 3.701 21 O -0.465 6.465 22 C -0.117 4.117 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.159 4.159 26 C -0.151 4.151 27 C -0.135 4.135 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.251 0.749 39 H 0.135 0.865 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.070 0.930 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.755 -6.632 -10.943 13.651 hybrid contribution -0.653 0.426 1.039 1.299 sum 4.102 -6.206 -9.903 12.386 Atomic orbital electron populations 1.23585 0.74752 1.05885 1.02453 1.86506 1.25157 1.32317 1.83842 1.23804 0.92087 0.81292 0.71080 1.90649 1.67858 1.37477 1.46692 1.21640 0.86861 1.00423 1.06312 1.21044 0.81719 0.93500 1.03421 1.43509 1.04866 1.62027 1.05006 1.19803 1.06015 1.36484 0.87200 0.87580 1.26195 0.96082 0.93306 1.03872 1.69969 1.30374 1.18377 1.33396 0.85148 0.77781 0.79876 0.77018 1.19890 1.20867 1.17662 1.20703 0.90100 0.80560 0.84036 1.90498 1.70441 1.57479 1.32390 1.20629 0.91152 1.03494 0.84419 1.45876 1.07739 1.74271 1.08486 1.21418 0.81187 0.74627 0.92847 1.90658 1.56000 1.51632 1.48173 1.21380 0.98208 1.01900 0.90183 1.21554 1.00842 0.95245 0.97334 1.21522 0.95989 1.03116 0.94408 1.21584 0.95392 0.97638 1.01245 1.21533 1.00963 0.98739 0.93845 1.21317 0.92049 1.02062 0.98072 0.92179 0.92062 0.84390 0.87515 0.86365 0.88440 0.93893 0.91556 0.89172 0.90256 0.74920 0.86524 0.91399 0.92672 0.90852 0.90519 0.92590 0.90275 0.90863 0.90716 0.93004 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.92 10.57 -51.37 -0.54 -11.46 16 3 C 0.47 17.58 7.96 71.24 0.57 18.15 16 4 O -0.54 -23.24 15.73 21.96 0.35 -22.90 16 5 C -0.11 -4.35 6.14 29.85 0.18 -4.16 16 6 C 0.13 6.04 4.34 86.38 0.37 6.42 16 7 N -0.44 -20.93 2.54 -635.52 -1.61 -22.54 16 8 C -0.37 -17.64 8.69 84.04 0.73 -16.91 16 9 H 0.11 4.80 7.01 -2.91 -0.02 4.78 16 10 C 0.01 0.49 4.95 84.92 0.42 0.91 16 11 N -0.89 -46.49 11.34 21.66 0.25 -46.24 16 12 Si 0.98 38.22 29.61 68.60 2.03 40.25 16 13 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 14 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 15 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 16 C 0.46 20.91 7.70 87.66 0.67 21.59 16 17 O -0.62 -29.92 15.22 -3.10 -0.05 -29.96 16 18 C 0.13 5.24 4.76 85.63 0.41 5.64 16 19 N -0.71 -24.46 5.42 -466.79 -2.53 -26.99 16 20 C 0.51 16.70 7.15 87.66 0.63 17.32 16 21 O -0.58 -23.39 15.98 -3.02 -0.05 -23.44 16 22 C -0.10 -2.21 2.53 -11.54 -0.03 -2.24 16 23 C -0.11 -2.31 5.10 30.59 0.16 -2.16 16 24 C -0.11 -1.70 5.92 30.60 0.18 -1.52 16 25 C -0.12 -1.71 5.92 30.60 0.18 -1.52 16 26 C -0.11 -1.72 5.92 30.58 0.18 -1.54 16 27 C -0.10 -2.12 4.49 30.58 0.14 -1.98 16 28 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 29 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 33 H 0.10 5.13 5.32 -2.39 -0.01 5.12 16 34 H 0.04 2.21 7.32 -2.38 -0.02 2.19 16 35 H 0.27 13.70 8.32 -92.71 -0.77 12.92 16 36 H 0.09 3.53 7.78 -2.39 -0.02 3.51 16 37 H 0.08 3.43 8.05 -2.39 -0.02 3.41 16 38 H 0.41 13.45 6.85 -92.71 -0.64 12.81 16 39 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 1.44 7.56 -2.39 -0.02 1.43 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 49 H 0.06 1.40 8.10 -2.38 -0.02 1.38 16 Total: -1.00 -66.14 400.08 4.15 -61.99 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: 0.32 Total: 41.51 kcal Atomic # 6 Polarization: 33.78 SS G_CDS: 5.99 Total: 39.77 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -3.90 Total: -95.77 kcal Atomic # 8 Polarization: -87.47 SS G_CDS: -0.29 Total: -87.76 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -66.14 4.15 -61.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339050.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.386 kcal (2) G-P(sol) polarization free energy of solvation -66.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds