Wall clock time and date at job start Tue Mar 31 2020 23:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34234 * 116.99911 * 2 1 4 4 O 1.20821 * 119.99880 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99610 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46751 * 181.51304 * 5 3 2 7 7 N 1.46501 * 109.47086 * 173.63201 * 6 5 3 8 8 C 1.37099 * 119.99779 * 279.10057 * 7 6 5 9 9 H 1.08007 * 120.00114 * 58.67893 * 8 7 6 10 10 C 1.38950 * 120.00438 * 238.68318 * 8 7 6 11 11 N 1.31410 * 119.99793 * 35.08495 * 10 8 7 12 12 Si 1.86804 * 119.99965 * 215.09337 * 10 8 7 13 13 H 1.48491 * 109.47152 * 84.99650 * 12 10 8 14 14 H 1.48506 * 109.46872 * 204.99260 * 12 10 8 15 15 H 1.48499 * 109.47068 * 324.98969 * 12 10 8 16 16 C 1.34771 * 120.00695 * 99.10079 * 7 6 5 17 17 O 1.21290 * 120.00445 * 183.62006 * 16 7 6 18 18 C 1.50705 * 119.99679 * 3.62236 * 16 7 6 19 19 N 1.46501 * 109.47329 * 38.37246 * 18 16 7 20 20 C 1.34774 * 119.99457 * 53.29758 * 19 18 16 21 21 C 1.50701 * 119.99582 * 182.59833 * 20 19 18 22 22 O 1.21279 * 120.00445 * 2.60354 * 20 19 18 23 23 C 1.52999 * 109.47230 * 158.37557 * 18 16 7 24 24 C 1.52999 * 109.47133 * 179.97438 * 23 18 16 25 25 C 1.52996 * 109.47078 * 299.99882 * 24 23 18 26 26 C 1.52995 * 109.47364 * 60.00002 * 25 24 23 27 27 C 1.52999 * 109.47021 * 300.00033 * 26 25 24 28 28 H 1.08995 * 109.47452 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47437 * 300.00060 * 1 2 3 30 30 H 1.09002 * 109.46963 * 59.99968 * 1 2 3 31 31 H 1.08991 * 109.47624 * 61.50448 * 5 3 2 32 32 H 1.09006 * 109.47222 * 301.50422 * 5 3 2 33 33 H 1.08994 * 109.47887 * 53.62532 * 6 5 3 34 34 H 1.09007 * 109.46780 * 293.62287 * 6 5 3 35 35 H 0.97003 * 119.99967 * 184.97003 * 11 10 8 36 36 H 0.96990 * 120.00151 * 233.30160 * 19 18 16 37 37 H 1.09000 * 109.47243 * 55.58435 * 21 20 19 38 38 H 1.09006 * 109.47184 * 175.58509 * 21 20 19 39 39 H 1.09004 * 109.47413 * 295.57862 * 21 20 19 40 40 H 1.08998 * 109.47212 * 59.99845 * 23 18 16 41 41 H 1.08999 * 109.46837 * 299.99665 * 23 18 16 42 42 H 1.09000 * 109.47129 * 180.02562 * 24 23 18 43 43 H 1.08998 * 109.47113 * 59.99889 * 24 23 18 44 44 H 1.09007 * 109.47088 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.47154 * 299.99982 * 25 24 23 46 46 H 1.09005 * 109.47146 * 59.99514 * 26 25 24 47 47 H 1.08992 * 109.47552 * 180.02562 * 26 25 24 48 48 H 1.09000 * 109.47129 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.47113 * 299.99785 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7415 0.0376 7 7 5.4552 2.8166 0.1903 8 6 6.0229 2.6700 1.4296 9 1 5.8581 1.7649 1.9955 10 6 6.8102 3.6858 1.9578 11 7 6.5120 4.9423 1.7142 12 14 8.2926 3.2654 3.0138 13 1 9.4648 3.0049 2.1403 14 1 8.5935 4.4029 3.9198 15 1 7.9978 2.0543 3.8210 16 6 6.2359 3.0296 -0.8874 17 8 7.4433 3.0264 -0.7720 18 6 5.6086 3.2720 -2.2361 19 7 4.4081 4.0962 -2.0753 20 6 4.4791 5.2683 -1.4138 21 6 3.2332 6.0880 -1.1974 22 8 5.5456 5.6633 -0.9926 23 6 6.6075 3.9969 -3.1404 24 6 5.9709 4.2424 -4.5098 25 6 5.5893 2.9026 -5.1424 26 6 4.5904 2.1777 -4.2382 27 6 5.2271 1.9322 -2.8688 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9545 0.8045 -0.9039 32 1 3.9576 0.7573 0.8754 33 1 3.5203 3.2407 0.8794 34 1 3.7065 3.2315 -0.8908 35 1 7.1011 5.6489 2.0217 36 1 3.5623 3.7984 -2.4449 37 1 2.4811 5.4801 -0.6945 38 1 3.4712 6.9550 -0.5811 39 1 2.8462 6.4219 -2.1602 40 1 7.5007 3.3837 -3.2600 41 1 6.8797 4.9512 -2.6895 42 1 6.6827 4.7583 -5.1541 43 1 5.0775 4.8554 -4.3905 44 1 5.1361 3.0775 -6.1182 45 1 6.4826 2.2896 -5.2616 46 1 3.6970 2.7908 -4.1188 47 1 4.3189 1.2231 -4.6886 48 1 4.5153 1.4162 -2.2244 49 1 6.1204 1.3192 -2.9881 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871340630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:28 Heat of formation + Delta-G solvation = -126.395793 kcal Electronic energy + Delta-G solvation = -33656.771417 eV Core-core repulsion = 29392.495131 eV Total energy + Delta-G solvation = -4264.276286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.84310 -40.12387 -37.64974 -37.06189 -36.38398 -34.73935 -33.38599 -32.06880 -30.57784 -30.44032 -30.15595 -28.14907 -27.56597 -25.14693 -23.66074 -22.48585 -22.31485 -20.66246 -20.36081 -19.68876 -18.59225 -17.50830 -16.81843 -16.54040 -16.45243 -16.33938 -15.54346 -15.30912 -14.75526 -14.67024 -14.44342 -13.86086 -13.69116 -13.66211 -13.47265 -13.23031 -13.19427 -12.60154 -12.54246 -12.34816 -12.27074 -12.11386 -11.94711 -11.78398 -11.75386 -11.53142 -11.40327 -11.20500 -10.90353 -10.80972 -10.75373 -10.68723 -10.45000 -10.38423 -10.28045 -10.19036 -10.07904 -9.82055 -8.94392 -8.58352 -8.29890 -7.68928 -7.05347 -6.04487 -3.86124 2.42066 2.87867 3.38586 3.45035 3.50668 3.59385 3.62991 4.14922 4.46961 4.78728 4.87627 4.95401 4.99790 5.07597 5.14160 5.14941 5.31781 5.35926 5.42304 5.43539 5.48350 5.52771 5.63110 5.68562 5.68975 5.75364 5.81390 5.83982 5.88766 5.99355 6.03405 6.18114 6.19988 6.27175 6.32302 6.34440 6.50324 6.52513 6.56439 6.58179 6.86986 6.93235 7.03909 7.74854 7.94216 8.02577 8.42437 8.99593 9.15365 9.21766 9.67370 10.29589 10.93429 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008030 B = 0.006684 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.154165 B = 4188.378014 C = 5984.842017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.509 6.509 5 C -0.135 4.135 6 C 0.066 3.934 7 N -0.432 5.432 8 C -0.375 4.375 9 H 0.070 0.930 10 C 0.096 3.904 11 N -0.795 5.795 12 Si 0.883 3.117 13 H -0.274 1.274 14 H -0.292 1.292 15 H -0.275 1.275 16 C 0.502 3.498 17 O -0.551 6.551 18 C 0.165 3.835 19 N -0.721 5.721 20 C 0.495 3.505 21 C -0.169 4.169 22 O -0.472 6.472 23 C -0.110 4.110 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.127 4.127 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.263 0.737 36 H 0.393 0.607 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 -5.547 -11.861 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.396 6.396 5 C -0.174 4.174 6 C -0.059 4.059 7 N -0.153 5.153 8 C -0.501 4.501 9 H 0.088 0.912 10 C -0.118 4.118 11 N -0.424 5.424 12 Si 0.709 3.291 13 H -0.199 1.199 14 H -0.219 1.219 15 H -0.200 1.200 16 C 0.288 3.712 17 O -0.430 6.430 18 C 0.076 3.924 19 N -0.381 5.381 20 C 0.281 3.719 21 C -0.229 4.229 22 O -0.342 6.342 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.156 4.156 26 C -0.154 4.154 27 C -0.165 4.165 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.073 0.927 36 H 0.230 0.770 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.875 -4.679 -11.356 16.405 hybrid contribution -0.048 -0.318 0.538 0.627 sum -10.923 -4.998 -10.818 16.165 Atomic orbital electron populations 1.23187 0.77185 1.03198 1.02347 1.86557 1.22865 1.34327 1.84430 1.24147 0.92417 0.80933 0.71637 1.90622 1.67329 1.36249 1.45432 1.22219 0.85671 1.04023 1.05489 1.22692 0.86443 0.91089 1.05719 1.42938 1.01711 1.64878 1.05735 1.18564 1.35277 1.01411 0.94809 0.91211 1.25263 0.97376 0.94057 0.95121 1.70214 1.32640 0.99078 1.40460 0.86725 0.85107 0.77804 0.79423 1.19937 1.21878 1.19983 1.20081 0.87328 0.79545 0.84227 1.90515 1.14430 1.53356 1.84649 1.20586 0.85741 0.90506 0.95578 1.46429 1.11127 1.21900 1.58627 1.20620 0.91685 0.81354 0.78254 1.21880 0.96710 1.01248 1.03065 1.90907 1.29942 1.68532 1.44826 1.21640 0.97435 1.02422 0.93369 1.21512 1.00526 0.96732 0.96500 1.21547 0.99173 0.96976 0.97897 1.21525 0.98366 1.00283 0.95206 1.21982 1.02297 0.95857 0.96316 0.88566 0.92074 0.92141 0.88308 0.87537 0.91447 0.87356 0.92695 0.77001 0.89709 0.89297 0.90575 0.90788 0.90092 0.92365 0.92209 0.92417 0.91926 0.92141 0.91727 0.90711 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.85 10.57 -39.27 -0.41 -5.27 16 3 C 0.47 7.12 7.96 36.01 0.29 7.41 16 4 O -0.51 -8.64 15.66 -18.75 -0.29 -8.93 16 5 C -0.14 -2.22 5.87 -27.88 -0.16 -2.38 16 6 C 0.07 1.31 3.44 -4.04 -0.01 1.30 16 7 N -0.43 -10.55 2.34 -114.81 -0.27 -10.82 16 8 C -0.38 -10.45 8.57 -14.93 -0.13 -10.58 16 9 H 0.07 1.91 8.03 -52.48 -0.42 1.49 16 10 C 0.10 2.79 4.41 -17.47 -0.08 2.71 16 11 N -0.79 -23.77 13.31 55.50 0.74 -23.04 16 12 Si 0.88 22.80 29.67 -169.99 -5.04 17.75 16 13 H -0.27 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.50 12.25 4.68 -10.99 -0.05 12.20 16 17 O -0.55 -16.02 15.41 5.55 0.09 -15.94 16 18 C 0.17 2.99 0.24 -132.97 -0.03 2.96 16 19 N -0.72 -11.60 1.66 -48.68 -0.08 -11.68 16 20 C 0.50 9.37 5.98 -10.99 -0.07 9.30 16 21 C -0.17 -2.47 10.32 36.01 0.37 -2.10 16 22 O -0.47 -11.63 13.90 5.56 0.08 -11.55 16 23 C -0.11 -1.98 4.10 -26.73 -0.11 -2.09 16 24 C -0.12 -1.54 5.77 -26.73 -0.15 -1.69 16 25 C -0.12 -1.31 5.92 -26.74 -0.16 -1.46 16 26 C -0.12 -1.25 5.75 -26.73 -0.15 -1.40 16 27 C -0.13 -1.80 4.69 -26.73 -0.13 -1.93 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 31 H 0.10 1.44 5.29 -51.93 -0.27 1.16 16 32 H 0.11 1.84 8.08 -51.93 -0.42 1.42 16 33 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 34 H 0.11 1.93 2.96 -87.85 -0.26 1.67 16 35 H 0.26 7.71 8.32 -40.82 -0.34 7.37 16 36 H 0.39 5.03 6.43 -40.82 -0.26 4.77 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.39 8.12 -51.93 -0.42 0.96 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.40 7.89 -51.93 -0.41 0.99 16 41 H 0.08 1.76 6.58 -51.93 -0.34 1.42 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.78 7.60 -51.93 -0.39 0.38 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.59 6.74 -51.93 -0.35 0.24 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 1.02 4.40 -51.93 -0.23 0.79 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -36.78 381.82 -6.51 -43.29 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.56 Total: 6.79 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 0.49 Total: 13.64 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.39 Total: -45.54 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -0.55 Total: -41.68 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.04 Total: 17.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.78 -6.51 -43.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871340630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.105 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds