Wall clock time and date at job start Wed Apr 1 2020 00:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47064 * 299.99712 * 3 2 1 6 6 H 1.48496 * 109.47502 * 59.99761 * 3 2 1 7 7 C 1.39941 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99897 * 195.51531 * 7 2 1 9 9 C 1.41401 * 119.99564 * 15.51294 * 7 2 1 10 10 C 1.40557 * 120.08484 * 25.39446 * 9 7 2 11 11 C 1.37596 * 119.54277 * 180.09211 * 10 9 7 12 12 C 1.38433 * 120.14193 * 0.03243 * 11 10 9 13 13 C 1.39150 * 120.92056 * 359.96390 * 12 11 10 14 14 C 1.37099 * 119.90082 * 359.97438 * 13 12 11 15 15 C 1.50678 * 121.91671 * 180.38505 * 14 13 12 16 16 C 1.52897 * 109.89641 * 343.08106 * 15 14 13 17 17 N 1.47182 * 108.44552 * 50.29734 * 16 15 14 18 18 C 1.46900 * 110.99532 * 165.47602 * 17 16 15 19 19 N 1.46499 * 109.46691 * 155.00736 * 18 17 16 20 20 C 1.46881 * 124.35566 * 269.72411 * 19 18 17 21 21 C 1.54875 * 105.44492 * 163.03196 * 20 19 18 22 22 C 1.53688 * 101.41798 * 24.89031 * 21 20 19 23 23 C 1.52771 * 115.47202 * 105.53457 * 22 21 20 24 24 C 1.53961 * 86.77243 * 92.59525 * 23 22 21 25 25 C 1.52768 * 115.47668 * 206.30679 * 22 21 20 26 26 C 1.34741 * 124.36241 * 90.02164 * 19 18 17 27 27 O 1.21273 * 125.14477 * 0.98868 * 26 19 18 28 28 C 1.46612 * 110.22839 * 288.88395 * 17 16 15 29 29 H 0.97007 * 120.00327 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.22721 * 0.05978 * 10 9 7 31 31 H 1.08000 * 119.93515 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.54306 * 179.97438 * 12 11 10 33 33 H 1.09003 * 109.38779 * 222.97404 * 15 14 13 34 34 H 1.09000 * 109.38248 * 103.18455 * 15 14 13 35 35 H 1.08991 * 109.64449 * 169.98840 * 16 15 14 36 36 H 1.09006 * 109.64010 * 290.61622 * 16 15 14 37 37 H 1.08999 * 109.47382 * 274.99872 * 18 17 16 38 38 H 1.08993 * 109.47501 * 35.00709 * 18 17 16 39 39 H 1.08997 * 110.23145 * 282.17461 * 20 19 18 40 40 H 1.08995 * 110.22995 * 44.14402 * 20 19 18 41 41 H 1.09003 * 111.24706 * 266.78101 * 21 20 19 42 42 H 1.08997 * 110.87385 * 142.83513 * 21 20 19 43 43 H 1.09002 * 113.66451 * 207.07088 * 23 22 21 44 44 H 1.09005 * 113.66239 * 338.12542 * 23 22 21 45 45 H 1.08999 * 113.58698 * 270.07427 * 24 23 22 46 46 H 1.09005 * 113.58493 * 139.27123 * 24 23 22 47 47 H 1.09001 * 113.66143 * 21.87613 * 25 22 21 48 48 H 1.09001 * 113.66278 * 152.93592 * 25 22 21 49 49 H 1.08997 * 109.26242 * 172.77408 * 28 17 16 50 50 H 1.08996 * 109.26454 * 292.22601 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0584 -1.2288 0.2507 9 6 1.3395 -2.4143 -0.3265 10 6 0.1931 -2.3845 -1.1391 11 6 -0.4497 -3.5610 -1.4488 12 6 0.0305 -4.7646 -0.9618 13 6 1.1643 -4.8087 -0.1563 14 6 1.8210 -3.6484 0.1636 15 6 3.0573 -3.6443 1.0249 16 6 3.1730 -4.9712 1.7756 17 7 3.0226 -6.0690 0.8068 18 6 3.4598 -7.3461 1.3864 19 7 2.7835 -8.4502 0.7011 20 6 1.4982 -9.0236 1.1214 21 6 0.9827 -9.8214 -0.1018 22 6 2.2962 -10.1365 -0.8350 23 6 2.7821 -11.5804 -0.7211 24 6 2.0170 -11.8494 -2.0298 25 6 2.1724 -10.3499 -2.3426 26 6 3.2631 -9.0743 -0.3925 27 8 4.3157 -8.8177 -0.9375 28 6 1.6338 -6.1500 0.3440 29 1 -0.4851 0.8401 -0.0004 30 1 -0.1809 -1.4446 -1.5175 31 1 -1.3309 -3.5456 -2.0731 32 1 -0.4819 -5.6822 -1.2105 33 1 2.9953 -2.8265 1.7429 34 1 3.9364 -3.5070 0.3952 35 1 4.1495 -5.0370 2.2551 36 1 2.3868 -5.0363 2.5279 37 1 4.5381 -7.4497 1.2656 38 1 3.2091 -7.3686 2.4469 39 1 1.6422 -9.6870 1.9742 40 1 0.7961 -8.2294 1.3751 41 1 0.3251 -9.2124 -0.7221 42 1 0.4822 -10.7366 0.2143 43 1 3.8628 -11.6871 -0.8161 44 1 2.3767 -12.1119 0.1399 45 1 0.9831 -12.1578 -1.8750 46 1 2.5533 -12.4974 -2.7232 47 1 1.2799 -9.8988 -2.7764 48 1 3.0812 -10.1099 -2.8945 49 1 1.5658 -6.8789 -0.4635 50 1 0.9976 -6.4686 1.1697 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872626490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:12 Heat of formation + Delta-G solvation = 7.215785 kcal Electronic energy + Delta-G solvation = -30324.143810 eV Core-core repulsion = 26508.803371 eV Total energy + Delta-G solvation = -3815.340439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.27208 -40.54953 -38.80089 -38.06826 -36.68966 -35.50579 -33.52970 -32.36286 -30.87073 -30.12458 -27.79138 -27.03411 -26.91855 -26.71729 -24.50168 -23.57540 -23.51564 -22.34016 -20.95670 -20.13389 -19.55675 -18.91803 -17.75030 -17.53763 -17.25882 -16.84502 -16.31744 -16.23943 -16.04212 -15.76865 -15.66236 -15.01264 -14.87407 -14.73857 -14.62401 -14.23595 -14.03170 -13.79465 -13.71140 -13.45855 -13.25426 -13.16202 -13.08663 -12.86527 -12.79303 -12.68036 -12.48944 -12.41578 -12.17051 -12.07239 -12.01232 -11.89065 -11.32057 -11.26445 -11.20284 -11.05002 -10.95661 -10.57301 -10.05276 -9.31665 -9.13624 -8.91727 -8.59245 -6.30547 0.97762 1.10331 1.37023 1.47483 1.49878 1.51761 1.97847 2.20424 2.74007 2.97340 3.25234 3.45003 3.61770 3.69807 3.83169 3.88590 3.93985 4.04649 4.12572 4.15310 4.31631 4.38513 4.42470 4.47099 4.52946 4.56649 4.61731 4.68447 4.71650 4.76956 4.78989 4.82760 4.99617 5.01567 5.02887 5.10248 5.12110 5.12358 5.16336 5.23258 5.26264 5.35014 5.35581 5.51470 5.56367 5.77750 5.91915 6.07500 6.12538 6.17794 6.20820 6.24066 6.45326 6.74113 6.98657 7.09459 7.16594 8.36309 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002809 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.794273 B = 9964.665862 C =10547.507928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.977 3.023 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.488 4.488 8 H 0.076 0.924 9 C 0.077 3.923 10 C -0.197 4.197 11 C -0.114 4.114 12 C -0.236 4.236 13 C -0.072 4.072 14 C -0.188 4.188 15 C -0.044 4.044 16 C 0.070 3.930 17 N -0.566 5.566 18 C 0.295 3.705 19 N -0.621 5.621 20 C 0.091 3.909 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.105 4.105 24 C -0.120 4.120 25 C -0.126 4.126 26 C 0.523 3.477 27 O -0.573 6.573 28 C 0.129 3.871 29 H 0.285 0.715 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 -21.171 4.543 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.517 4.517 8 H 0.094 0.906 9 C 0.075 3.925 10 C -0.217 4.217 11 C -0.132 4.132 12 C -0.255 4.255 13 C -0.073 4.073 14 C -0.190 4.190 15 C -0.082 4.082 16 C -0.058 4.058 17 N -0.294 5.294 18 C 0.084 3.916 19 N -0.355 5.355 20 C -0.031 4.031 21 C -0.138 4.138 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.157 4.157 25 C -0.164 4.164 26 C 0.312 3.688 27 O -0.452 6.452 28 C 0.001 3.999 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.146 0.854 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.127 0.873 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.502 -20.741 3.943 21.118 hybrid contribution -0.147 1.523 0.274 1.554 sum 0.355 -19.218 4.217 19.678 Atomic orbital electron populations 1.69896 1.08899 1.30108 1.36569 1.26716 0.95469 1.04335 0.91483 0.85228 0.79470 0.76626 0.78825 1.18269 1.19276 1.18945 1.19788 0.97355 0.91854 1.42736 0.90575 1.17996 0.92104 0.92840 0.89547 1.21267 1.00396 0.96920 1.03085 1.20845 0.99095 0.93210 1.00048 1.20543 1.00646 0.96838 1.07496 1.19438 0.95568 0.93945 0.98306 1.19778 1.00997 0.92656 1.05554 1.20065 0.94708 0.96428 0.96976 1.22082 1.01599 0.89782 0.92334 1.62552 1.22483 1.05046 1.39290 1.21997 0.96838 0.78900 0.93826 1.48601 1.23955 1.33430 1.29493 1.22633 0.83316 0.98290 0.98847 1.22482 0.94113 1.02289 0.94876 1.22196 0.96217 0.95469 0.99062 1.22662 1.00321 0.90938 1.00355 1.22862 1.02019 0.94371 0.96445 1.22744 1.02141 0.98841 0.92655 1.21223 0.85901 0.82489 0.79205 1.90661 1.26224 1.69118 1.59152 1.20627 0.87309 0.93565 0.98381 0.90427 0.88330 0.87557 0.86896 0.91902 0.93453 0.88564 0.94016 0.89869 0.90050 0.88155 0.89983 0.89806 0.85409 0.91272 0.88002 0.87312 0.90547 0.90266 0.91820 0.91200 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.27 10.87 21.83 0.24 -44.03 16 2 C 0.03 1.75 5.18 85.26 0.44 2.19 16 3 Si 0.98 39.30 29.59 68.60 2.03 41.33 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.49 -26.65 8.13 23.46 0.19 -26.45 16 8 H 0.08 4.04 6.98 -2.92 -0.02 4.02 16 9 C 0.08 4.28 5.58 -21.20 -0.12 4.16 16 10 C -0.20 -10.83 8.68 22.68 0.20 -10.64 16 11 C -0.11 -5.50 10.02 22.16 0.22 -5.28 16 12 C -0.24 -10.49 9.65 22.54 0.22 -10.27 16 13 C -0.07 -3.23 5.79 -19.93 -0.12 -3.34 16 14 C -0.19 -9.30 5.83 -19.40 -0.11 -9.42 16 15 C -0.04 -1.87 4.93 29.81 0.15 -1.73 16 16 C 0.07 2.28 5.41 86.22 0.47 2.75 16 17 N -0.57 -19.07 4.94 -913.50 -4.51 -23.58 16 18 C 0.29 7.76 6.31 170.81 1.08 8.84 16 19 N -0.62 -15.00 1.85 -828.83 -1.53 -16.53 16 20 C 0.09 1.39 6.54 86.95 0.57 1.95 16 21 C -0.10 -1.29 6.37 31.47 0.20 -1.09 16 22 C -0.13 -2.37 1.04 -52.98 -0.05 -2.43 16 23 C -0.11 -1.48 7.31 30.84 0.23 -1.25 16 24 C -0.12 -1.43 7.93 31.24 0.25 -1.18 16 25 C -0.13 -2.41 7.36 30.84 0.23 -2.19 16 26 C 0.52 14.97 7.17 87.54 0.63 15.59 16 27 O -0.57 -22.21 17.39 -3.01 -0.05 -22.27 16 28 C 0.13 4.49 3.88 85.60 0.33 4.82 16 29 H 0.29 13.79 8.30 -92.70 -0.77 13.02 16 30 H 0.10 5.68 6.13 -2.91 -0.02 5.67 16 31 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 32 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.06 2.70 7.35 -2.39 -0.02 2.69 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.10 2.59 8.03 -2.39 -0.02 2.57 16 36 H 0.04 1.30 8.05 -2.38 -0.02 1.28 16 37 H 0.08 2.39 7.93 -2.39 -0.02 2.37 16 38 H 0.08 1.65 7.86 -2.39 -0.02 1.63 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.32 5.88 -2.39 -0.01 1.31 16 41 H 0.08 1.19 8.08 -2.39 -0.02 1.17 16 42 H 0.13 0.74 7.93 -2.39 -0.02 0.72 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.10 0.89 8.05 -2.38 -0.02 0.87 16 45 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.08 1.42 8.07 -2.39 -0.02 1.40 16 48 H 0.06 1.57 7.98 -2.39 -0.02 1.55 16 49 H 0.07 2.45 6.88 -2.39 -0.02 2.44 16 50 H 0.05 1.53 6.31 -2.39 -0.02 1.51 16 Total: -1.00 -71.95 385.68 2.09 -69.86 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.93 Total: 30.17 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 4.99 Total: -34.96 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -5.80 Total: -84.13 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -71.95 2.09 -69.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872626490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.077 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds