Wall clock time and date at job start Wed Apr 1 2020 00:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99573 * 2 1 4 4 O 1.20822 * 120.00080 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99844 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.99271 * 303.91884 * 5 3 2 7 7 O 1.44054 * 109.92803 * 182.66491 * 5 3 2 8 8 C 1.44379 * 106.98382 * 214.02681 * 7 5 3 9 9 C 1.54997 * 103.48753 * 40.13729 * 8 7 5 10 10 C 1.54101 * 109.87903 * 65.00085 * 5 3 2 11 11 H 1.08995 * 110.49082 * 240.26668 * 10 5 3 12 12 C 1.53006 * 110.48479 * 2.77574 * 10 5 3 13 13 N 1.46506 * 109.46900 * 183.15612 * 12 10 5 14 14 C 1.34775 * 119.99704 * 179.97438 * 13 12 10 15 15 O 1.21593 * 120.00288 * 5.07572 * 14 13 12 16 16 N 1.34778 * 119.99664 * 185.07339 * 14 13 12 17 17 C 1.46918 * 120.63293 * 354.96656 * 16 14 13 18 18 C 1.53188 * 108.77766 * 126.41456 * 17 16 14 19 19 C 1.53045 * 109.31454 * 54.63304 * 18 17 16 20 20 C 1.53044 * 109.53625 * 298.63729 * 19 18 17 21 21 H 1.08994 * 109.49617 * 301.41426 * 20 19 18 22 22 C 1.50701 * 109.52148 * 181.33012 * 20 19 18 23 23 H 1.07997 * 120.00039 * 0.14620 * 22 20 19 24 24 C 1.37879 * 119.99837 * 180.14893 * 22 20 19 25 25 N 1.31509 * 119.99806 * 359.97438 * 24 22 20 26 26 Si 1.86800 * 119.99882 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47175 * 89.99868 * 26 24 22 28 28 H 1.48501 * 109.47191 * 209.99868 * 26 24 22 29 29 H 1.48502 * 109.46988 * 329.99762 * 26 24 22 30 30 C 1.46934 * 120.62820 * 174.98888 * 16 14 13 31 31 H 1.09007 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47619 * 300.00098 * 1 2 3 33 33 H 1.08994 * 109.47397 * 60.00294 * 1 2 3 34 34 H 1.09001 * 110.61330 * 281.64208 * 8 7 5 35 35 H 1.08998 * 110.75381 * 158.70575 * 8 7 5 36 36 H 1.08997 * 110.90583 * 204.77682 * 9 8 7 37 37 H 1.08999 * 110.90669 * 81.17858 * 9 8 7 38 38 H 1.09003 * 109.47016 * 63.16065 * 12 10 5 39 39 H 1.08997 * 109.47255 * 303.15498 * 12 10 5 40 40 H 0.96998 * 120.00352 * 0.02562 * 13 12 10 41 41 H 1.08996 * 109.58868 * 6.62349 * 17 16 14 42 42 H 1.09003 * 109.58990 * 246.19921 * 17 16 14 43 43 H 1.09002 * 109.50458 * 174.58696 * 18 17 16 44 44 H 1.09011 * 109.49587 * 294.68377 * 18 17 16 45 45 H 1.08999 * 109.45406 * 58.65824 * 19 18 17 46 46 H 1.09002 * 109.45810 * 178.61633 * 19 18 17 47 47 H 0.97005 * 119.99774 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.58254 * 353.37234 * 30 16 14 49 49 H 1.09002 * 109.58492 * 113.65639 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9680 0.7239 0.8509 7 8 3.9856 2.6517 0.0634 8 6 5.2017 2.7577 -0.7076 9 6 4.9300 1.8540 -1.9372 10 6 4.1221 0.6906 -1.3125 11 1 4.7733 -0.1588 -1.1065 12 6 2.9784 0.2743 -2.2398 13 7 3.5298 -0.3462 -3.4470 14 6 2.7028 -0.7941 -4.4123 15 8 1.5054 -0.6011 -4.3249 16 7 3.2029 -1.4560 -5.4745 17 6 4.6543 -1.6013 -5.6504 18 6 4.9830 -3.0868 -5.8288 19 6 4.1503 -3.6549 -6.9804 20 6 2.6620 -3.5260 -6.6479 21 1 2.4487 -4.0593 -5.7215 22 6 1.8430 -4.1150 -7.7675 23 1 2.3345 -4.5413 -8.6295 24 6 0.4664 -4.1095 -7.6912 25 7 -0.1319 -3.5908 -6.6413 26 14 -0.5488 -4.8403 -9.0787 27 1 -0.7875 -6.2813 -8.8115 28 1 -1.8504 -4.1308 -9.1664 29 1 0.1846 -4.6894 -10.3611 30 6 2.3070 -2.0454 -6.4789 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 6.0518 2.3839 -0.1369 35 1 5.3730 3.7881 -1.0189 36 1 5.8636 1.4920 -2.3678 37 1 4.3375 2.3818 -2.6846 38 1 2.3967 1.1535 -2.5165 39 1 2.3353 -0.4399 -1.7255 40 1 4.4901 -0.4353 -3.5512 41 1 5.1694 -1.2162 -4.7705 42 1 4.9725 -1.0480 -6.5340 43 1 6.0431 -3.2002 -6.0559 44 1 4.7478 -3.6244 -4.9101 45 1 4.3678 -3.1007 -7.8934 46 1 4.4004 -4.7058 -7.1254 47 1 -1.1005 -3.5867 -6.5878 48 1 1.2733 -1.9533 -6.1454 49 1 2.4320 -1.5267 -7.4293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876135114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:50 Heat of formation + Delta-G solvation = -174.008427 kcal Electronic energy + Delta-G solvation = -31352.159234 eV Core-core repulsion = 27085.818309 eV Total energy + Delta-G solvation = -4266.340925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20263 -41.22091 -40.10915 -38.51793 -37.62086 -36.32015 -35.26898 -33.67052 -32.83476 -31.50091 -31.40970 -28.70857 -27.55375 -26.85908 -25.51230 -24.32552 -23.41529 -22.75409 -21.75247 -21.45841 -20.34698 -19.23304 -18.69732 -18.34349 -18.16516 -17.95975 -17.22897 -16.93397 -16.53779 -16.41772 -16.15549 -15.78437 -15.43500 -15.17184 -15.11298 -14.91808 -14.47290 -14.40756 -14.31504 -14.26512 -13.99613 -13.56142 -13.48060 -13.19011 -12.88252 -12.75376 -12.65695 -12.54179 -12.26138 -12.24226 -12.19810 -12.06007 -11.84273 -11.77183 -11.61017 -11.53048 -11.24419 -10.94447 -10.84573 -10.78731 -10.49973 -10.18273 -9.24897 -8.09309 -6.26297 0.98084 1.37611 1.40399 1.42035 1.52422 1.71562 2.25140 2.42525 2.83800 2.97912 3.19997 3.37852 3.42985 3.63141 3.81210 4.08243 4.09380 4.17896 4.19756 4.20174 4.23098 4.27017 4.31091 4.44604 4.60423 4.63060 4.72228 4.75544 4.77523 4.83597 4.86441 4.87508 4.93253 5.11383 5.14272 5.23111 5.29664 5.31043 5.34707 5.47647 5.57848 5.66834 5.67212 5.91466 5.99140 6.18096 6.37653 6.57067 6.87183 7.14853 7.43740 7.68470 8.93671 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.002987 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.393865 B = 9370.715031 C =10751.865363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.451 3.549 4 O -0.530 6.530 5 C 0.100 3.900 6 H 0.155 0.845 7 O -0.380 6.380 8 C 0.044 3.956 9 C -0.150 4.150 10 C -0.112 4.112 11 H 0.150 0.850 12 C 0.133 3.867 13 N -0.724 5.724 14 C 0.692 3.308 15 O -0.643 6.643 16 N -0.626 5.626 17 C 0.109 3.891 18 C -0.125 4.125 19 C -0.106 4.106 20 C 0.040 3.960 21 H -0.013 1.013 22 C -0.536 4.536 23 H 0.062 0.938 24 C 0.009 3.991 25 N -0.914 5.914 26 Si 0.956 3.044 27 H -0.275 1.275 28 H -0.290 1.290 29 H -0.262 1.262 30 C 0.144 3.856 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.071 0.929 40 H 0.412 0.588 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.258 0.742 48 H 0.072 0.928 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.147 8.159 13.931 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.295 3.705 4 O -0.418 6.418 5 C 0.040 3.960 6 H 0.172 0.828 7 O -0.299 6.299 8 C -0.031 4.031 9 C -0.187 4.187 10 C -0.131 4.131 11 H 0.168 0.832 12 C 0.009 3.991 13 N -0.385 5.385 14 C 0.394 3.606 15 O -0.525 6.525 16 N -0.362 5.362 17 C -0.013 4.013 18 C -0.163 4.163 19 C -0.143 4.143 20 C 0.020 3.980 21 H 0.005 0.995 22 C -0.574 4.574 23 H 0.081 0.919 24 C -0.190 4.190 25 N -0.553 5.553 26 Si 0.782 3.218 27 H -0.200 1.200 28 H -0.216 1.216 29 H -0.186 1.186 30 C 0.021 3.979 31 H 0.143 0.857 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.252 0.748 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 16.788 8.792 14.177 23.667 hybrid contribution -1.533 -0.374 -0.976 1.856 sum 15.255 8.417 13.200 21.859 Atomic orbital electron populations 1.23458 0.75125 1.05439 1.02167 1.86511 1.24620 1.32412 1.83456 1.24291 0.93127 0.81433 0.71661 1.90665 1.67873 1.37609 1.45649 1.22514 0.85474 0.86229 1.01774 0.82813 1.89037 1.43544 1.24212 1.73134 1.23957 0.86533 1.02228 0.90423 1.23353 1.01949 0.94933 0.98472 1.22829 0.96706 1.01790 0.91745 0.83230 1.21536 0.96105 0.96723 0.84783 1.44839 1.09452 1.65427 1.18762 1.16212 0.84806 0.78895 0.80719 1.90887 1.16657 1.64737 1.80187 1.47666 1.08427 1.56099 1.23964 1.21905 0.78737 0.97623 1.03041 1.21909 1.00938 0.94969 0.98452 1.21509 0.94712 1.00055 0.98050 1.18904 0.93137 0.91183 0.94753 0.99487 1.21540 0.91596 1.38775 1.05497 0.91950 1.25894 0.99541 0.95618 0.97963 1.70100 1.09398 1.45630 1.30183 0.85584 0.77903 0.78351 0.80007 1.20033 1.21581 1.18571 1.21563 0.94665 0.94228 0.87487 0.85683 0.90604 0.93689 0.87878 0.87564 0.85367 0.92116 0.95461 0.91132 0.74818 0.87669 0.90380 0.87545 0.92888 0.92586 0.92982 0.93275 0.90976 0.95102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.55 113.37 1.20 1.96 16 2 O -0.35 -9.18 8.23 -51.42 -0.42 -9.60 16 3 C 0.45 12.16 5.71 71.24 0.41 12.56 16 4 O -0.53 -18.46 16.28 28.30 0.46 -18.00 16 5 C 0.10 1.76 3.97 30.22 0.12 1.88 16 6 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 7 O -0.38 -7.72 10.75 -130.28 -1.40 -9.12 16 8 C 0.04 0.46 7.72 72.67 0.56 1.02 16 9 C -0.15 -1.67 6.47 31.89 0.21 -1.46 16 10 C -0.11 -1.63 3.08 -9.80 -0.03 -1.66 16 11 H 0.15 1.03 8.14 -2.39 -0.02 1.02 16 12 C 0.13 3.55 3.81 86.38 0.33 3.88 16 13 N -0.72 -19.94 5.33 -478.51 -2.55 -22.49 16 14 C 0.69 28.65 8.30 179.05 1.49 30.14 16 15 O -0.64 -34.64 15.79 -4.01 -0.06 -34.71 16 16 N -0.63 -24.76 2.97 -836.91 -2.49 -27.25 16 17 C 0.11 2.81 6.43 86.36 0.56 3.37 16 18 C -0.12 -3.34 6.08 30.67 0.19 -3.15 16 19 C -0.11 -3.92 5.11 30.62 0.16 -3.77 16 20 C 0.04 1.98 2.25 -11.46 -0.03 1.96 16 21 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 22 C -0.54 -29.49 8.57 25.60 0.22 -29.28 16 23 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 24 C 0.01 0.52 5.30 84.66 0.45 0.97 16 25 N -0.91 -56.27 11.39 21.45 0.24 -56.03 16 26 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 27 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 28 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 29 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 30 C 0.14 7.25 5.39 86.36 0.47 7.71 16 31 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 32 H 0.08 1.60 8.13 -2.39 -0.02 1.58 16 33 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 34 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 1.03 7.80 -2.39 -0.02 1.01 16 38 H 0.03 0.92 7.67 -2.39 -0.02 0.90 16 39 H 0.07 2.18 5.59 -2.39 -0.01 2.17 16 40 H 0.41 7.43 5.84 -92.71 -0.54 6.89 16 41 H 0.11 1.74 5.57 -2.39 -0.01 1.73 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 48 H 0.07 4.42 5.15 -2.39 -0.01 4.41 16 49 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -87.84 386.12 2.50 -85.34 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.42 Total: 19.14 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 6.28 Total: 26.13 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -4.79 Total: -105.77 kcal Atomic # 8 Polarization: -70.00 SS G_CDS: -1.43 Total: -71.43 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -87.84 2.50 -85.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876135114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.671 kcal (2) G-P(sol) polarization free energy of solvation -87.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds