Wall clock time and date at job start Wed Apr 1 2020 00:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46683 * 275.37258 * 3 2 1 5 5 H 1.48497 * 109.47016 * 35.36869 * 3 2 1 6 6 H 1.48498 * 109.46820 * 155.37154 * 3 2 1 7 7 C 1.39943 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00170 * 342.50346 * 7 2 1 9 9 C 1.41401 * 119.99988 * 162.50334 * 7 2 1 10 10 C 1.40437 * 119.96736 * 329.09244 * 9 7 2 11 11 C 1.37601 * 119.54466 * 180.24687 * 10 9 7 12 12 C 1.38385 * 119.98703 * 0.17292 * 11 10 9 13 13 C 1.39244 * 121.04459 * 359.90294 * 12 11 10 14 14 C 1.37086 * 119.99150 * 359.55882 * 13 12 11 15 15 C 1.50570 * 122.99710 * 180.97052 * 14 13 12 16 16 C 1.52792 * 110.83320 * 339.71828 * 15 14 13 17 17 N 1.47125 * 107.91092 * 47.41903 * 16 15 14 18 18 C 1.34780 * 121.36091 * 115.94769 * 17 16 15 19 19 O 1.21286 * 119.99434 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00380 * 180.02562 * 18 17 16 21 21 C 1.54110 * 111.69023 * 298.59332 * 20 18 17 22 22 C 1.56328 * 103.47592 * 260.95575 * 21 20 18 23 23 C 1.54830 * 103.20236 * 322.39288 * 22 21 20 24 24 C 1.54276 * 104.42526 * 37.40212 * 23 22 21 25 25 H 1.09001 * 111.87536 * 99.07518 * 24 23 22 26 26 N 1.47924 * 108.70221 * 222.45214 * 24 23 22 27 27 C 1.48473 * 105.98944 * 139.43893 * 26 24 23 28 28 C 1.54443 * 111.71351 * 61.01281 * 20 18 17 29 29 C 1.46671 * 117.30299 * 295.96492 * 17 16 15 30 30 H 0.96997 * 120.00424 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.22507 * 0.21790 * 10 9 7 32 32 H 1.07995 * 120.00854 * 180.19545 * 11 10 9 33 33 H 1.08000 * 119.47318 * 179.97438 * 12 11 10 34 34 H 1.08996 * 109.19378 * 100.05037 * 15 14 13 35 35 H 1.08997 * 109.19892 * 219.37853 * 15 14 13 36 36 H 1.08998 * 109.78137 * 166.97497 * 16 15 14 37 37 H 1.09000 * 109.78123 * 287.78941 * 16 15 14 38 38 H 1.08997 * 110.49600 * 20.96627 * 21 20 18 39 39 H 1.09004 * 110.49504 * 143.63798 * 21 20 18 40 40 H 1.09002 * 110.87397 * 203.77239 * 22 21 20 41 41 H 1.08997 * 110.20031 * 80.70096 * 22 21 20 42 42 H 1.08994 * 110.44793 * 278.66019 * 23 22 21 43 43 H 1.09003 * 110.43986 * 156.13295 * 23 22 21 44 44 H 1.00899 * 110.99798 * 260.05292 * 26 24 23 45 45 H 1.09004 * 110.66861 * 202.35460 * 27 26 24 46 46 H 1.08995 * 110.81569 * 79.28760 * 27 26 24 47 47 H 1.09004 * 110.71973 * 217.34201 * 28 20 18 48 48 H 1.09000 * 110.72570 * 340.44400 * 28 20 18 49 49 H 1.08992 * 109.42788 * 284.26774 * 29 17 16 50 50 H 1.09000 * 109.38552 * 164.39687 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3761 2.1120 -1.3940 5 1 1.5009 2.6173 0.8104 6 1 3.5918 1.4101 0.5835 7 6 2.0080 -1.2119 0.0005 8 1 1.5055 -2.1255 0.2822 9 6 3.3729 -1.2403 -0.3676 10 6 3.8664 -0.3169 -1.3036 11 6 5.1950 -0.3557 -1.6594 12 6 6.0340 -1.3025 -1.0983 13 6 5.5571 -2.2248 -0.1704 14 6 4.2396 -2.1980 0.2074 15 6 3.6574 -3.1483 1.2199 16 6 4.5356 -4.3899 1.3676 17 7 5.9301 -3.9433 1.5112 18 6 6.6266 -4.1713 2.6423 19 8 6.1050 -4.7559 3.5682 20 6 8.0534 -3.6998 2.7567 21 6 8.9581 -4.3607 1.6985 22 6 9.6542 -5.5180 2.4859 23 6 9.9033 -4.8961 3.8818 24 6 8.6563 -4.0261 4.1430 25 1 7.9335 -4.5336 4.7817 26 7 9.0897 -2.7416 4.7350 27 6 8.2538 -1.6940 4.0960 28 6 8.1604 -2.1649 2.6230 29 6 6.5317 -3.2396 0.3736 30 1 -0.4850 0.8400 0.0004 31 1 3.2074 0.4182 -1.7415 32 1 5.5832 0.3528 -2.3761 33 1 7.0753 -1.3257 -1.3839 34 1 3.5842 -2.6444 2.1836 35 1 2.6612 -3.4502 0.8968 36 1 4.2357 -4.9506 2.2529 37 1 4.4385 -5.0179 0.4820 38 1 8.3618 -4.7349 0.8665 39 1 9.7092 -3.6548 1.3440 40 1 10.5962 -5.7973 2.0139 41 1 8.9878 -6.3774 2.5592 42 1 10.8019 -4.2795 3.8691 43 1 9.9872 -5.6775 4.6372 44 1 8.9635 -2.7441 5.7361 45 1 8.7416 -0.7213 4.1588 46 1 7.2643 -1.6569 4.5514 47 1 9.0590 -1.8875 2.0718 48 1 7.2723 -1.7569 2.1404 49 1 6.7802 -3.9584 -0.4070 50 1 7.4389 -2.7318 0.7011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877111264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:17 Heat of formation + Delta-G solvation = -12.320478 kcal Electronic energy + Delta-G solvation = -31215.713130 eV Core-core repulsion = 27399.525535 eV Total energy + Delta-G solvation = -3816.187595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14541 -38.99614 -37.78096 -35.71156 -34.41229 -33.75457 -32.67092 -31.19694 -30.57888 -29.08257 -27.60144 -26.59175 -25.49037 -25.02243 -23.26750 -22.00182 -21.22987 -20.73758 -20.53964 -19.30227 -18.14719 -17.43776 -16.92089 -16.27675 -15.88917 -15.63284 -15.35296 -14.93104 -14.66742 -14.36690 -14.20599 -13.91409 -13.75266 -13.44324 -13.31590 -13.05333 -12.93526 -12.66128 -12.17716 -12.00664 -11.92637 -11.81420 -11.69835 -11.65425 -11.46110 -11.26694 -11.21327 -10.97223 -10.92784 -10.84100 -10.80070 -10.60168 -10.48005 -10.16633 -9.88994 -9.56967 -9.45227 -9.20421 -8.66568 -8.39178 -7.61000 -7.59097 -7.00855 -4.56040 2.45378 2.50209 2.73554 3.05312 3.14412 3.15968 3.25942 3.92135 3.97975 4.29695 4.37007 4.41038 4.58758 4.79785 4.98888 5.05961 5.16934 5.18640 5.25009 5.36948 5.41315 5.49850 5.56008 5.58722 5.64397 5.69581 5.72004 5.74762 5.79544 5.81075 5.83803 5.93529 5.94397 5.98333 6.00938 6.01889 6.13941 6.23134 6.30801 6.49248 6.53542 6.68166 6.72688 6.75153 6.88891 7.06790 7.21249 7.34501 7.48716 7.60277 7.68301 7.78893 7.99727 8.27823 8.31446 8.55994 8.72146 10.01003 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.003534 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.910248 B = 7920.470227 C = 8008.632241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.447 4.447 8 H 0.094 0.906 9 C 0.095 3.905 10 C -0.238 4.238 11 C -0.076 4.076 12 C -0.237 4.237 13 C -0.070 4.070 14 C -0.156 4.156 15 C -0.071 4.071 16 C 0.111 3.889 17 N -0.600 5.600 18 C 0.535 3.465 19 O -0.549 6.549 20 C -0.090 4.090 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.107 4.107 24 C 0.079 3.921 25 H 0.080 0.920 26 N -0.665 5.665 27 C 0.037 3.963 28 C -0.119 4.119 29 C 0.144 3.856 30 H 0.285 0.715 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.336 0.664 45 H 0.084 0.916 46 H 0.043 0.957 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.115 -5.325 3.780 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.169 1.169 7 C -0.475 4.475 8 H 0.112 0.888 9 C 0.092 3.908 10 C -0.258 4.258 11 C -0.095 4.095 12 C -0.257 4.257 13 C -0.070 4.070 14 C -0.157 4.157 15 C -0.108 4.108 16 C -0.011 4.011 17 N -0.331 5.331 18 C 0.322 3.678 19 O -0.427 6.427 20 C -0.094 4.094 21 C -0.148 4.148 22 C -0.162 4.162 23 C -0.145 4.145 24 C -0.031 4.031 25 H 0.098 0.902 26 N -0.293 5.293 27 C -0.092 4.092 28 C -0.157 4.157 29 C 0.022 3.978 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.151 0.849 45 H 0.102 0.898 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.087 0.913 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 16.140 -5.454 3.900 17.477 hybrid contribution -0.884 0.894 0.166 1.269 sum 15.255 -4.559 4.066 16.433 Atomic orbital electron populations 1.69680 1.08068 1.30285 1.35118 1.26132 0.94685 1.01659 0.90903 0.86319 0.81270 0.79895 0.78799 1.19689 1.21894 1.16852 1.19523 0.92797 0.96001 1.39175 0.88772 1.17706 0.92865 0.90638 0.89612 1.20961 0.95660 1.05123 1.04012 1.20496 0.93842 0.97061 0.98081 1.20170 0.98278 1.01588 1.05669 1.19202 0.93460 0.96278 0.98097 1.19253 0.92073 1.02595 1.01822 1.20455 0.98497 0.93551 0.98304 1.21723 0.79993 0.97243 1.02106 1.47945 1.13885 1.56366 1.14899 1.20093 0.87341 0.78734 0.81604 1.90632 1.70968 1.43013 1.38116 1.22024 0.92467 0.97285 0.97602 1.22821 0.97594 0.98035 0.96400 1.22745 1.00217 0.97662 0.95545 1.22331 0.97899 0.97954 0.96345 1.22803 0.95693 0.91137 0.93470 0.90209 1.63226 1.53874 1.02924 1.09308 1.23032 0.95907 0.96113 0.94107 1.22865 1.03554 0.92025 0.97229 1.20818 0.96039 0.93467 0.87494 0.90425 0.88238 0.88755 0.88800 0.91926 0.89997 0.89457 0.91337 0.90718 0.90161 0.91158 0.91650 0.90157 0.91902 0.84915 0.89772 0.93850 0.89530 0.89507 0.91258 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.01 13.93 55.55 0.77 -20.24 16 2 C 0.09 2.17 5.40 -17.34 -0.09 2.07 16 3 Si 0.91 20.42 24.52 -169.99 -4.17 16.26 16 4 H -0.27 -5.90 6.72 56.52 0.38 -5.52 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.25 -5.66 6.86 56.52 0.39 -5.27 16 7 C -0.45 -11.48 8.79 -37.74 -0.33 -11.81 16 8 H 0.09 2.51 6.52 -52.48 -0.34 2.17 16 9 C 0.09 2.27 5.10 -106.67 -0.54 1.73 16 10 C -0.24 -5.49 7.14 -38.99 -0.28 -5.77 16 11 C -0.08 -1.55 10.03 -39.76 -0.40 -1.95 16 12 C -0.24 -4.44 9.63 -39.15 -0.38 -4.82 16 13 C -0.07 -1.32 5.82 -104.59 -0.61 -1.92 16 14 C -0.16 -3.35 5.82 -103.91 -0.60 -3.95 16 15 C -0.07 -1.38 5.29 -28.05 -0.15 -1.53 16 16 C 0.11 1.87 6.44 -3.81 -0.02 1.84 16 17 N -0.60 -9.62 2.89 -174.45 -0.50 -10.12 16 18 C 0.53 8.60 6.54 -10.98 -0.07 8.53 16 19 O -0.55 -10.42 14.93 5.55 0.08 -10.33 16 20 C -0.09 -1.15 0.47 -153.45 -0.07 -1.22 16 21 C -0.11 -1.17 5.02 -24.36 -0.12 -1.29 16 22 C -0.12 -1.21 6.92 -23.98 -0.17 -1.37 16 23 C -0.11 -1.09 6.53 -25.10 -0.16 -1.25 16 24 C 0.08 0.97 3.73 -65.61 -0.24 0.72 16 25 H 0.08 1.15 6.72 -51.93 -0.35 0.80 16 26 N -0.67 -7.45 6.97 -102.10 -0.71 -8.17 16 27 C 0.04 0.45 7.55 -1.94 -0.01 0.43 16 28 C -0.12 -1.47 4.67 -24.96 -0.12 -1.59 16 29 C 0.14 2.17 3.85 -5.02 -0.02 2.15 16 30 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 31 H 0.10 2.32 4.79 -52.48 -0.25 2.07 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.09 1.49 8.05 -52.49 -0.42 1.06 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.64 6.43 -51.93 -0.33 1.30 16 36 H 0.09 1.47 7.07 -51.93 -0.37 1.11 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.81 6.19 -51.93 -0.32 0.48 16 39 H 0.08 0.75 7.23 -51.93 -0.38 0.38 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.34 3.34 8.92 -39.29 -0.35 2.99 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.09 0.94 7.24 -51.93 -0.38 0.57 16 48 H 0.09 1.25 6.20 -51.93 -0.32 0.93 16 49 H 0.07 0.94 7.86 -51.93 -0.41 0.54 16 50 H 0.09 1.26 3.76 -51.93 -0.20 1.06 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -27.84 366.95 -10.78 -38.62 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.38 Total: 9.46 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -4.40 Total: -21.00 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.44 Total: -38.53 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.84 -10.78 -38.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877111264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.301 kcal (2) G-P(sol) polarization free energy of solvation -27.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds