Wall clock time and date at job start Wed Apr 1 2020 00:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86807 * 119.99831 * 2 1 4 4 H 1.48500 * 109.46683 * 275.37258 * 3 2 1 5 5 H 1.48497 * 109.47016 * 35.36869 * 3 2 1 6 6 H 1.48498 * 109.46820 * 155.37154 * 3 2 1 7 7 C 1.39943 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00170 * 342.50346 * 7 2 1 9 9 C 1.41401 * 119.99988 * 162.50334 * 7 2 1 10 10 C 1.40437 * 119.96736 * 329.09244 * 9 7 2 11 11 C 1.37601 * 119.54466 * 180.24687 * 10 9 7 12 12 C 1.38385 * 119.98703 * 0.17292 * 11 10 9 13 13 C 1.39244 * 121.04459 * 359.90294 * 12 11 10 14 14 C 1.37086 * 119.99150 * 359.55882 * 13 12 11 15 15 C 1.50570 * 122.99710 * 180.97052 * 14 13 12 16 16 C 1.52792 * 110.83320 * 339.71828 * 15 14 13 17 17 N 1.47125 * 107.91092 * 47.41903 * 16 15 14 18 18 C 1.34780 * 121.36091 * 115.94769 * 17 16 15 19 19 O 1.21286 * 119.99434 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00380 * 180.02562 * 18 17 16 21 21 C 1.54110 * 111.69023 * 298.59332 * 20 18 17 22 22 C 1.56328 * 103.47592 * 260.95575 * 21 20 18 23 23 C 1.54830 * 103.20236 * 322.39288 * 22 21 20 24 24 C 1.54276 * 104.42526 * 37.40212 * 23 22 21 25 25 H 1.09001 * 111.87536 * 99.07518 * 24 23 22 26 26 N 1.47924 * 108.70221 * 222.45214 * 24 23 22 27 27 C 1.48473 * 105.98944 * 139.43893 * 26 24 23 28 28 C 1.54443 * 111.71351 * 61.01281 * 20 18 17 29 29 C 1.46671 * 117.30299 * 295.96492 * 17 16 15 30 30 H 0.96997 * 120.00424 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.22507 * 0.21790 * 10 9 7 32 32 H 1.07995 * 120.00854 * 180.19545 * 11 10 9 33 33 H 1.08000 * 119.47318 * 179.97438 * 12 11 10 34 34 H 1.08996 * 109.19378 * 100.05037 * 15 14 13 35 35 H 1.08997 * 109.19892 * 219.37853 * 15 14 13 36 36 H 1.08998 * 109.78137 * 166.97497 * 16 15 14 37 37 H 1.09000 * 109.78123 * 287.78941 * 16 15 14 38 38 H 1.08997 * 110.49600 * 20.96627 * 21 20 18 39 39 H 1.09004 * 110.49504 * 143.63798 * 21 20 18 40 40 H 1.09002 * 110.87397 * 203.77239 * 22 21 20 41 41 H 1.08997 * 110.20031 * 80.70096 * 22 21 20 42 42 H 1.08994 * 110.44793 * 278.66019 * 23 22 21 43 43 H 1.09003 * 110.43986 * 156.13295 * 23 22 21 44 44 H 1.00899 * 110.99798 * 260.05292 * 26 24 23 45 45 H 1.09004 * 110.66861 * 202.35460 * 27 26 24 46 46 H 1.08995 * 110.81569 * 79.28760 * 27 26 24 47 47 H 1.09004 * 110.71973 * 217.34201 * 28 20 18 48 48 H 1.09000 * 110.72570 * 340.44400 * 28 20 18 49 49 H 1.08992 * 109.42788 * 284.26774 * 29 17 16 50 50 H 1.09000 * 109.38552 * 164.39687 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3761 2.1120 -1.3940 5 1 1.5009 2.6173 0.8104 6 1 3.5918 1.4101 0.5835 7 6 2.0080 -1.2119 0.0005 8 1 1.5055 -2.1255 0.2822 9 6 3.3729 -1.2403 -0.3676 10 6 3.8664 -0.3169 -1.3036 11 6 5.1950 -0.3557 -1.6594 12 6 6.0340 -1.3025 -1.0983 13 6 5.5571 -2.2248 -0.1704 14 6 4.2396 -2.1980 0.2074 15 6 3.6574 -3.1483 1.2199 16 6 4.5356 -4.3899 1.3676 17 7 5.9301 -3.9433 1.5112 18 6 6.6266 -4.1713 2.6423 19 8 6.1050 -4.7559 3.5682 20 6 8.0534 -3.6998 2.7567 21 6 8.9581 -4.3607 1.6985 22 6 9.6542 -5.5180 2.4859 23 6 9.9033 -4.8961 3.8818 24 6 8.6563 -4.0261 4.1430 25 1 7.9335 -4.5336 4.7817 26 7 9.0897 -2.7416 4.7350 27 6 8.2538 -1.6940 4.0960 28 6 8.1604 -2.1649 2.6230 29 6 6.5317 -3.2396 0.3736 30 1 -0.4850 0.8400 0.0004 31 1 3.2074 0.4182 -1.7415 32 1 5.5832 0.3528 -2.3761 33 1 7.0753 -1.3257 -1.3839 34 1 3.5842 -2.6444 2.1836 35 1 2.6612 -3.4502 0.8968 36 1 4.2357 -4.9506 2.2529 37 1 4.4385 -5.0179 0.4820 38 1 8.3618 -4.7349 0.8665 39 1 9.7092 -3.6548 1.3440 40 1 10.5962 -5.7973 2.0139 41 1 8.9878 -6.3774 2.5592 42 1 10.8019 -4.2795 3.8691 43 1 9.9872 -5.6775 4.6372 44 1 8.9635 -2.7441 5.7361 45 1 8.7416 -0.7213 4.1588 46 1 7.2643 -1.6569 4.5514 47 1 9.0590 -1.8875 2.0718 48 1 7.2723 -1.7569 2.1404 49 1 6.7802 -3.9584 -0.4070 50 1 7.4389 -2.7318 0.7011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877111264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:16 Heat of formation + Delta-G solvation = -29.008427 kcal Electronic energy + Delta-G solvation = -31216.436774 eV Core-core repulsion = 27399.525535 eV Total energy + Delta-G solvation = -3816.911239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27890 -40.40849 -39.09285 -37.18264 -35.52823 -35.25811 -34.09369 -32.58818 -31.98085 -30.57579 -28.56493 -27.45337 -27.03399 -26.60551 -24.72476 -23.13850 -22.36254 -22.27530 -21.59067 -20.58231 -19.37128 -19.06074 -18.15169 -17.76200 -17.14377 -16.92619 -16.71842 -16.31446 -15.92572 -15.64513 -15.40297 -15.15587 -14.95765 -14.91452 -14.63284 -14.52849 -14.21351 -13.95639 -13.73089 -13.42129 -13.28281 -13.14176 -12.93895 -12.77820 -12.74179 -12.59926 -12.48943 -12.28854 -12.25322 -11.97960 -11.81073 -11.79163 -11.65160 -11.61637 -11.32893 -11.22506 -11.02433 -10.71796 -9.77747 -9.60459 -9.33394 -9.20108 -8.88829 -6.47645 0.79000 0.79633 1.22732 1.37269 1.44501 1.48866 1.89435 2.09196 2.59707 3.04381 3.35427 3.42974 3.48072 3.58188 3.79515 3.91004 4.04528 4.12525 4.16401 4.23849 4.28042 4.31998 4.39013 4.47545 4.49764 4.51173 4.54513 4.63940 4.69346 4.76548 4.83175 4.83702 4.89899 4.93668 4.95724 4.98811 5.01078 5.08995 5.11269 5.12037 5.18721 5.23847 5.29005 5.43172 5.46031 5.67333 5.77390 5.85242 5.92583 6.00879 6.21845 6.32505 6.38361 6.48347 6.77082 6.85856 7.04587 8.19387 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.003534 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.910248 B = 7920.470227 C = 8008.632241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.047 3.953 3 Si 0.963 3.037 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.071 3.929 10 C -0.255 4.255 11 C -0.084 4.084 12 C -0.211 4.211 13 C -0.070 4.070 14 C -0.171 4.171 15 C -0.063 4.063 16 C 0.119 3.881 17 N -0.601 5.601 18 C 0.529 3.471 19 O -0.586 6.586 20 C -0.088 4.088 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.100 4.100 24 C 0.075 3.925 25 H 0.050 0.950 26 N -0.655 5.655 27 C 0.035 3.965 28 C -0.116 4.116 29 C 0.147 3.853 30 H 0.290 0.710 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.342 0.658 45 H 0.102 0.898 46 H 0.018 0.982 47 H 0.115 0.885 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.560 -5.071 2.322 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.167 4.167 3 Si 0.787 3.213 4 H -0.184 1.184 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.511 4.511 8 H 0.079 0.921 9 C 0.069 3.931 10 C -0.274 4.274 11 C -0.102 4.102 12 C -0.230 4.230 13 C -0.071 4.071 14 C -0.173 4.173 15 C -0.101 4.101 16 C -0.004 4.004 17 N -0.332 5.332 18 C 0.319 3.681 19 O -0.467 6.467 20 C -0.092 4.092 21 C -0.146 4.146 22 C -0.159 4.159 23 C -0.138 4.138 24 C -0.036 4.036 25 H 0.068 0.932 26 N -0.283 5.283 27 C -0.094 4.094 28 C -0.154 4.154 29 C 0.026 3.974 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.160 0.840 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.157 0.843 45 H 0.120 0.880 46 H 0.037 0.963 47 H 0.133 0.867 48 H 0.085 0.915 49 H 0.118 0.882 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.601 -5.200 2.428 22.351 hybrid contribution -2.382 0.693 0.640 2.562 sum 19.219 -4.506 3.067 19.977 Atomic orbital electron populations 1.69724 1.09098 1.31106 1.38311 1.26749 0.95237 1.03992 0.90675 0.85524 0.79492 0.77011 0.79272 1.18363 1.21119 1.17934 1.19500 0.94286 0.95341 1.41950 0.92052 1.17894 0.92512 0.92192 0.90530 1.21094 0.97265 1.04897 1.04157 1.20927 0.92700 0.98087 0.98522 1.20770 1.00236 0.99056 1.02916 1.19671 0.92887 0.96992 0.97532 1.19538 0.93389 1.02259 1.02089 1.20320 0.98508 0.94559 0.96721 1.21553 0.80449 0.95738 1.02624 1.48007 1.13301 1.56369 1.15525 1.20807 0.88696 0.77915 0.80719 1.90619 1.72113 1.44680 1.39276 1.22075 0.90346 0.97847 0.98939 1.22905 0.97552 0.98608 0.95565 1.22749 1.01046 0.96894 0.95166 1.22299 0.96870 0.97736 0.96940 1.22821 0.96186 0.91722 0.92837 0.93225 1.63305 1.52983 1.02253 1.09788 1.23066 0.95060 0.97215 0.94085 1.22896 1.03812 0.91283 0.97427 1.21021 0.95395 0.93251 0.87739 0.89923 0.89145 0.85409 0.83994 0.94285 0.91773 0.90105 0.89538 0.90490 0.87639 0.88668 0.92977 0.89154 0.91584 0.84291 0.88023 0.96305 0.86675 0.91501 0.88237 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.51 13.93 21.83 0.30 -47.20 16 2 C 0.05 2.53 5.40 85.26 0.46 2.99 16 3 Si 0.96 43.35 24.52 68.60 1.68 45.03 16 4 H -0.26 -10.94 6.72 99.48 0.67 -10.27 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -11.72 6.86 99.48 0.68 -11.04 16 7 C -0.48 -26.54 8.79 23.46 0.21 -26.33 16 8 H 0.06 3.64 6.52 -2.91 -0.02 3.62 16 9 C 0.07 3.50 5.10 -21.19 -0.11 3.39 16 10 C -0.25 -11.55 7.14 22.65 0.16 -11.39 16 11 C -0.08 -3.10 10.03 22.15 0.22 -2.88 16 12 C -0.21 -6.77 9.63 22.55 0.22 -6.56 16 13 C -0.07 -2.43 5.82 -19.84 -0.12 -2.54 16 14 C -0.17 -7.37 5.82 -19.40 -0.11 -7.49 16 15 C -0.06 -2.61 5.29 29.74 0.16 -2.45 16 16 C 0.12 4.02 6.44 86.19 0.55 4.57 16 17 N -0.60 -18.27 2.89 -824.23 -2.38 -20.65 16 18 C 0.53 16.41 6.54 87.66 0.57 16.99 16 19 O -0.59 -22.61 14.93 -3.05 -0.05 -22.65 16 20 C -0.09 -2.01 0.47 -51.50 -0.02 -2.03 16 21 C -0.11 -1.77 5.02 32.13 0.16 -1.61 16 22 C -0.12 -1.87 6.92 32.38 0.22 -1.65 16 23 C -0.10 -1.72 6.53 31.65 0.21 -1.51 16 24 C 0.07 1.69 3.73 45.72 0.17 1.86 16 25 H 0.05 1.43 6.72 -2.39 -0.02 1.41 16 26 N -0.65 -13.19 6.97 -476.94 -3.33 -16.52 16 27 C 0.03 0.76 7.55 86.66 0.65 1.41 16 28 C -0.12 -2.46 4.67 31.74 0.15 -2.31 16 29 C 0.15 3.80 3.85 85.65 0.33 4.13 16 30 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 31 H 0.09 4.20 4.79 -2.91 -0.01 4.19 16 32 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 33 H 0.14 3.32 8.05 -2.91 -0.02 3.30 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.06 2.83 6.43 -2.39 -0.02 2.81 16 36 H 0.08 2.83 7.07 -2.39 -0.02 2.82 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.08 1.25 6.19 -2.39 -0.01 1.23 16 39 H 0.11 1.25 7.23 -2.38 -0.02 1.24 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.40 7.97 -2.39 -0.02 1.38 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.34 6.31 8.92 -89.69 -0.80 5.51 16 45 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 46 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.11 1.82 7.24 -2.39 -0.02 1.80 16 48 H 0.07 1.71 6.20 -2.39 -0.01 1.69 16 49 H 0.10 2.11 7.86 -2.39 -0.02 2.09 16 50 H 0.12 2.54 3.76 -2.39 -0.01 2.53 16 Total: -1.00 -65.72 366.95 0.44 -65.28 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.11 Total: 30.11 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.09 Total: -33.40 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -5.40 Total: -84.37 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.68 Total: 45.03 kcal Total: -65.72 0.44 -65.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877111264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.275 kcal (2) G-P(sol) polarization free energy of solvation -65.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds