Wall clock time and date at job start Wed Apr 1 2020 00:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47423 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47052 * 300.00380 * 3 2 1 6 6 H 1.48506 * 109.47068 * 59.99938 * 3 2 1 7 7 C 1.39940 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00063 * 186.64518 * 7 2 1 9 9 C 1.41392 * 120.00042 * 6.63612 * 7 2 1 10 10 C 1.40447 * 119.96906 * 33.32402 * 9 7 2 11 11 C 1.37603 * 119.53951 * 180.56862 * 10 9 7 12 12 C 1.38376 * 119.99500 * 359.65064 * 11 10 9 13 13 C 1.39245 * 121.04549 * 0.11833 * 12 11 10 14 14 C 1.37097 * 119.98649 * 359.60969 * 13 12 11 15 15 C 1.50567 * 122.99311 * 181.06786 * 14 13 12 16 16 C 1.52788 * 110.88310 * 339.67858 * 15 14 13 17 17 N 1.47235 * 107.85970 * 47.38492 * 16 15 14 18 18 C 1.34777 * 121.34303 * 116.02227 * 17 16 15 19 19 O 1.21616 * 119.99867 * 354.01896 * 18 17 16 20 20 C 1.47096 * 120.00152 * 174.02984 * 18 17 16 21 21 C 1.32990 * 120.00060 * 189.09832 * 20 18 17 22 22 C 1.50705 * 119.99914 * 20.34308 * 21 20 18 23 23 H 1.08996 * 109.50284 * 2.66612 * 22 21 20 24 24 C 1.53125 * 109.50033 * 122.78082 * 22 21 20 25 25 C 1.53116 * 109.15691 * 177.59843 * 24 22 21 26 26 C 1.53044 * 109.27946 * 302.34319 * 25 24 22 27 27 N 1.46849 * 109.52139 * 59.18072 * 26 25 24 28 28 C 1.46852 * 111.19815 * 298.25823 * 27 26 25 29 29 C 1.46672 * 117.31841 * 295.99434 * 17 16 15 30 30 H 0.96999 * 120.00433 * 359.97438 * 1 2 3 31 31 H 1.07992 * 120.22589 * 0.35286 * 10 9 7 32 32 H 1.08003 * 119.99659 * 179.97438 * 11 10 9 33 33 H 1.07992 * 119.47753 * 180.14192 * 12 11 10 34 34 H 1.09007 * 109.19346 * 100.03924 * 15 14 13 35 35 H 1.09004 * 109.19665 * 219.31630 * 15 14 13 36 36 H 1.08999 * 109.78014 * 166.97149 * 16 15 14 37 37 H 1.09000 * 109.78003 * 287.74202 * 16 15 14 38 38 H 1.08006 * 120.00040 * 9.10351 * 20 18 17 39 39 H 1.08006 * 120.00581 * 200.34169 * 21 20 18 40 40 H 1.09002 * 109.51993 * 297.49834 * 24 22 21 41 41 H 1.09004 * 109.52296 * 57.69175 * 24 22 21 42 42 H 1.09003 * 109.50376 * 182.40768 * 25 24 22 43 43 H 1.08997 * 109.53825 * 62.30191 * 25 24 22 44 44 H 1.09001 * 109.45888 * 299.16845 * 26 25 24 45 45 H 1.08992 * 109.46438 * 179.19963 * 26 25 24 46 46 H 1.00898 * 110.99911 * 174.16302 * 27 26 25 47 47 H 1.08996 * 109.46251 * 301.72606 * 28 27 26 48 48 H 1.08996 * 109.46014 * 181.75995 * 28 27 26 49 49 H 1.09005 * 109.42438 * 284.31639 * 29 17 16 50 50 H 1.09004 * 109.43036 * 164.47928 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0826 -1.2150 0.1077 9 6 1.3082 -2.4322 -0.1426 10 6 0.1504 -2.4889 -0.9355 11 6 -0.5304 -3.6784 -1.0582 12 6 -0.0689 -4.8097 -0.4085 13 6 1.0803 -4.7684 0.3767 14 6 1.7780 -3.5957 0.5090 15 6 3.0406 -3.4800 1.3211 16 6 3.1456 -4.6222 2.3304 17 7 2.8509 -5.8790 1.6223 18 6 3.7832 -6.8430 1.4877 19 8 4.9238 -6.6419 1.8587 20 6 3.4212 -8.1382 0.8917 21 6 4.2850 -9.1488 0.9221 22 6 5.4093 -9.1491 1.9258 23 1 5.3250 -8.2717 2.5668 24 6 5.3310 -10.4172 2.7806 25 6 6.5105 -10.4387 3.7567 26 6 7.8203 -10.3699 2.9680 27 7 7.8469 -9.1392 2.1673 28 6 6.7509 -9.1177 1.1902 29 6 1.5018 -6.0401 1.0700 30 1 -0.4851 0.8400 0.0004 31 1 -0.2051 -1.6041 -1.4426 32 1 -1.4218 -3.7302 -1.6657 33 1 -0.6084 -5.7394 -0.5124 34 1 3.9010 -3.5124 0.6525 35 1 3.0378 -2.5294 1.8545 36 1 4.1539 -4.6587 2.7426 37 1 2.4239 -4.4723 3.1334 38 1 2.4539 -8.2683 0.4292 39 1 4.1810 -9.9695 0.2277 40 1 4.3954 -10.4222 3.3398 41 1 5.3758 -11.2947 2.1356 42 1 6.4844 -11.3599 4.3388 43 1 6.4443 -9.5822 4.4275 44 1 7.8926 -11.2343 2.3079 45 1 8.6618 -10.3708 3.6607 46 1 8.7397 -9.0235 1.7118 47 1 6.8282 -9.9880 0.5384 48 1 6.8157 -8.2091 0.5917 49 1 0.8036 -6.2615 1.8772 50 1 1.4989 -6.8617 0.3537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877112318.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:32 Heat of formation + Delta-G solvation = 2.718414 kcal Electronic energy + Delta-G solvation = -29407.201523 eV Core-core repulsion = 25591.666063 eV Total energy + Delta-G solvation = -3815.535460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.08756 -38.83534 -37.90797 -35.53512 -34.09938 -33.59995 -32.14433 -31.76806 -30.21648 -29.82015 -28.67883 -25.37250 -25.00413 -24.04387 -23.74532 -22.75985 -21.31042 -20.57886 -19.91406 -19.41537 -17.80945 -17.15276 -17.01486 -16.33783 -15.47992 -15.42780 -15.08385 -14.75706 -14.50535 -14.21339 -14.07495 -13.91445 -13.55456 -13.42332 -13.40017 -13.17632 -13.00681 -12.90909 -12.50726 -12.45550 -11.96925 -11.83406 -11.51745 -11.37940 -11.29595 -11.19058 -11.03977 -10.91971 -10.86044 -10.66200 -10.46858 -10.41547 -10.16753 -9.74166 -9.41182 -9.33447 -9.20995 -8.97497 -8.53477 -8.14732 -7.30311 -7.24922 -6.70264 -4.41505 1.36288 2.73313 2.83897 3.08120 3.13100 3.15814 3.38166 3.50540 3.94443 4.07096 4.60941 4.67317 4.75522 4.78855 4.86263 4.98221 5.21098 5.27804 5.33001 5.42886 5.45277 5.53191 5.53858 5.57984 5.69424 5.74559 5.80122 5.81408 5.90809 5.93435 6.00303 6.01260 6.13453 6.20698 6.27890 6.31107 6.34385 6.52556 6.67318 6.75721 6.87279 6.91905 6.94692 7.09711 7.18388 7.26576 7.32035 7.57411 7.72561 7.88139 7.99298 8.03564 8.24065 8.50822 8.59929 8.87299 8.92581 10.24427 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.002506 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.781025 B =11168.577662 C =12216.441472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.110 3.890 10 C -0.152 4.152 11 C -0.108 4.108 12 C -0.227 4.227 13 C -0.085 4.085 14 C -0.163 4.163 15 C -0.069 4.069 16 C 0.114 3.886 17 N -0.600 5.600 18 C 0.545 3.455 19 O -0.538 6.538 20 C -0.212 4.212 21 C -0.065 4.065 22 C -0.086 4.086 23 H 0.127 0.873 24 C -0.112 4.112 25 C -0.116 4.116 26 C 0.058 3.942 27 N -0.686 5.686 28 C 0.079 3.921 29 C 0.157 3.843 30 H 0.278 0.722 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.341 0.659 47 H 0.021 0.979 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.385 -16.958 3.570 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.108 3.892 10 C -0.171 4.171 11 C -0.127 4.127 12 C -0.247 4.247 13 C -0.085 4.085 14 C -0.165 4.165 15 C -0.107 4.107 16 C -0.008 4.008 17 N -0.331 5.331 18 C 0.336 3.664 19 O -0.419 6.419 20 C -0.233 4.233 21 C -0.085 4.085 22 C -0.105 4.105 23 H 0.145 0.855 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.071 4.071 27 N -0.317 5.317 28 C -0.051 4.051 29 C 0.035 3.965 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.159 0.841 47 H 0.039 0.961 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.449 -16.299 4.252 18.418 hybrid contribution 0.173 0.179 -0.912 0.945 sum 7.622 -16.120 3.340 18.142 Atomic orbital electron populations 1.69785 1.07337 1.28808 1.37333 1.25856 0.94836 1.01078 0.92486 0.86250 0.80831 0.81118 0.78461 1.18469 1.19926 1.20018 1.19562 0.95100 0.90054 1.44535 0.90385 1.17629 0.91729 0.91481 0.88376 1.21283 0.98469 0.96290 1.01080 1.20612 0.98560 0.93783 0.99725 1.20195 0.99745 0.97564 1.07186 1.19113 0.96714 0.93129 0.99568 1.19350 0.99141 0.93839 1.04143 1.20428 0.96154 0.97546 0.96570 1.21694 1.01685 0.82799 0.94665 1.48018 1.12476 1.17744 1.54865 1.18512 0.84694 0.84654 0.78589 1.90696 1.19114 1.81148 1.50910 1.22820 1.00781 0.93773 1.05886 1.23580 0.94083 0.96853 0.93977 1.20943 0.92016 1.00993 0.96511 0.85532 1.21597 0.98474 0.97136 0.97717 1.21557 0.93964 1.01963 0.97937 1.21914 0.98336 0.90458 0.96437 1.60155 1.06378 1.37457 1.27719 1.21742 0.90475 1.00184 0.92657 1.20495 0.82186 0.97097 0.96750 0.91124 0.86483 0.89271 0.89404 0.92603 0.90094 0.89548 0.91476 0.85178 0.86215 0.91866 0.92637 0.91776 0.90942 0.95672 0.91075 0.84140 0.96131 0.90321 0.91548 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.57 10.94 55.55 0.61 -19.96 16 2 C 0.07 1.81 5.29 -17.34 -0.09 1.72 16 3 Si 0.91 18.65 29.56 -169.99 -5.03 13.62 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -11.83 7.84 -37.75 -0.30 -12.12 16 8 H 0.08 1.94 7.11 -52.48 -0.37 1.57 16 9 C 0.11 2.82 5.52 -106.67 -0.59 2.23 16 10 C -0.15 -3.83 8.60 -38.98 -0.34 -4.17 16 11 C -0.11 -2.44 10.03 -39.76 -0.40 -2.84 16 12 C -0.23 -4.73 9.63 -39.16 -0.38 -5.10 16 13 C -0.08 -1.75 5.82 -104.59 -0.61 -2.36 16 14 C -0.16 -3.75 5.82 -103.91 -0.60 -4.36 16 15 C -0.07 -1.42 4.99 -28.06 -0.14 -1.56 16 16 C 0.11 2.02 6.44 -3.75 -0.02 1.99 16 17 N -0.60 -10.25 2.94 -175.76 -0.52 -10.77 16 18 C 0.54 8.98 7.37 -12.67 -0.09 8.89 16 19 O -0.54 -10.03 13.05 5.26 0.07 -9.96 16 20 C -0.21 -2.73 9.28 -37.81 -0.35 -3.08 16 21 C -0.06 -0.72 8.78 -36.13 -0.32 -1.04 16 22 C -0.09 -1.04 1.88 -91.69 -0.17 -1.21 16 23 H 0.13 1.96 5.02 -51.93 -0.26 1.70 16 24 C -0.11 -1.10 5.27 -26.61 -0.14 -1.24 16 25 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 26 C 0.06 0.53 6.55 -3.83 -0.03 0.50 16 27 N -0.69 -7.51 6.85 -113.81 -0.78 -8.28 16 28 C 0.08 0.91 5.80 -3.83 -0.02 0.89 16 29 C 0.16 2.59 6.02 -5.03 -0.03 2.56 16 30 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 31 H 0.12 3.08 6.42 -52.49 -0.34 2.74 16 32 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 33 H 0.09 1.57 8.05 -52.49 -0.42 1.15 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.69 7.13 -51.93 -0.37 1.32 16 36 H 0.09 1.51 7.10 -51.93 -0.37 1.14 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.13 1.43 6.10 -52.48 -0.32 1.11 16 39 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.34 3.12 8.90 -39.29 -0.35 2.77 16 47 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.08 1.15 5.70 -51.93 -0.30 0.86 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -28.43 387.18 -12.32 -40.75 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.73 Total: 10.32 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -4.78 Total: -21.55 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: -0.69 Total: -39.01 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.43 -12.32 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877112318.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.464 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds