Wall clock time and date at job start Wed Apr 1 2020 00:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 119.99914 * 2 1 4 4 H 1.48500 * 109.47138 * 239.99611 * 3 2 1 5 5 H 1.48493 * 109.47414 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47016 * 120.00020 * 3 2 1 7 7 C 1.39940 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00662 * 192.78176 * 7 2 1 9 9 C 1.41406 * 119.99557 * 12.78430 * 7 2 1 10 10 C 1.40442 * 119.97039 * 30.66916 * 9 7 2 11 11 C 1.37594 * 119.54428 * 180.23338 * 10 9 7 12 12 C 1.38383 * 119.98948 * 0.13529 * 11 10 9 13 13 C 1.39249 * 121.04554 * 359.70582 * 12 11 10 14 14 C 1.37081 * 119.98410 * 359.78333 * 13 12 11 15 15 C 1.50574 * 122.98537 * 181.51772 * 14 13 12 16 16 C 1.52797 * 110.86241 * 339.48910 * 15 14 13 17 17 N 1.47234 * 107.85461 * 47.46624 * 16 15 14 18 18 C 1.34778 * 121.33109 * 116.04485 * 17 16 15 19 19 O 1.21614 * 119.99965 * 5.18093 * 18 17 16 20 20 C 1.47095 * 119.99854 * 185.17660 * 18 17 16 21 21 C 1.33001 * 119.99870 * 174.45435 * 20 18 17 22 22 C 1.50698 * 120.00374 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.49711 * 0.02562 * 22 21 20 24 24 C 1.53122 * 109.50563 * 239.92456 * 22 21 20 25 25 C 1.53118 * 109.15882 * 182.40060 * 24 22 21 26 26 C 1.53040 * 109.27810 * 57.65453 * 25 24 22 27 27 N 1.46842 * 109.52197 * 300.81951 * 26 25 24 28 28 C 1.46846 * 111.23527 * 61.72330 * 27 26 25 29 29 C 1.46658 * 117.33936 * 296.02681 * 17 16 15 30 30 H 0.97004 * 119.99607 * 0.02562 * 1 2 3 31 31 H 1.08006 * 120.22675 * 0.20363 * 10 9 7 32 32 H 1.08004 * 120.00880 * 180.15645 * 11 10 9 33 33 H 1.07999 * 119.47938 * 179.68204 * 12 11 10 34 34 H 1.09007 * 109.20168 * 219.13563 * 15 14 13 35 35 H 1.08997 * 109.16575 * 99.81845 * 15 14 13 36 36 H 1.09005 * 109.78288 * 287.87830 * 16 15 14 37 37 H 1.09003 * 109.83043 * 167.08376 * 16 15 14 38 38 H 1.07993 * 120.00558 * 354.45508 * 20 18 17 39 39 H 1.08004 * 120.00038 * 0.02562 * 21 20 18 40 40 H 1.09000 * 109.51914 * 302.30853 * 24 22 21 41 41 H 1.09000 * 109.52155 * 62.43266 * 24 22 21 42 42 H 1.08995 * 109.50218 * 177.59498 * 25 24 22 43 43 H 1.08998 * 109.50626 * 297.70985 * 25 24 22 44 44 H 1.09001 * 109.45735 * 60.83167 * 26 25 24 45 45 H 1.08998 * 109.46469 * 180.80878 * 26 25 24 46 46 H 1.00900 * 111.00357 * 297.64024 * 27 26 25 47 47 H 1.08996 * 109.49885 * 178.28031 * 28 27 26 48 48 H 1.08998 * 109.43182 * 58.30854 * 28 27 26 49 49 H 1.09000 * 109.43124 * 284.25682 * 29 17 16 50 50 H 1.08996 * 109.38518 * 164.39168 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0679 -1.2235 0.2074 9 6 1.3272 -2.4214 -0.2699 10 6 0.2134 -2.4234 -1.1253 11 6 -0.4454 -3.6045 -1.3786 12 6 -0.0110 -4.7790 -0.7896 13 6 1.0939 -4.7914 0.0578 14 6 1.7721 -3.6285 0.3163 15 6 2.9939 -3.5700 1.1945 16 6 3.0602 -4.7867 2.1164 17 7 2.8119 -5.9861 1.2994 18 6 3.7585 -6.9317 1.1370 19 8 4.8087 -6.8515 1.7451 20 6 3.5214 -8.0607 0.2244 21 6 4.4947 -8.9333 -0.0209 22 6 4.2517 -10.0902 -0.9554 23 1 3.2292 -10.0464 -1.3304 24 6 4.4653 -11.4075 -0.2045 25 6 4.2752 -12.5760 -1.1756 26 6 5.2535 -12.4270 -2.3430 27 7 5.0081 -11.1521 -3.0291 28 6 5.2299 -10.0127 -2.1297 29 6 1.4933 -6.1112 0.6698 30 1 -0.4850 0.8401 -0.0004 31 1 -0.1240 -1.5041 -1.5808 32 1 -1.3013 -3.6152 -2.0372 33 1 -0.5373 -5.7005 -0.9901 34 1 2.9577 -2.6637 1.7991 35 1 3.8848 -3.5468 0.5670 36 1 2.2983 -4.7041 2.8916 37 1 4.0472 -4.8501 2.5746 38 1 2.5570 -8.1811 -0.2465 39 1 5.4591 -8.8131 0.4504 40 1 5.4754 -11.4341 0.2043 41 1 3.7417 -11.4857 0.6070 42 1 4.4679 -13.5151 -0.6570 43 1 3.2532 -12.5719 -1.5544 44 1 6.2756 -12.4450 -1.9648 45 1 5.1109 -13.2497 -3.0437 46 1 4.0794 -11.1260 -3.4226 47 1 5.0701 -9.0825 -2.6747 48 1 6.2524 -10.0417 -1.7530 49 1 0.7584 -6.3994 1.4214 50 1 1.5346 -6.8737 -0.1079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877112319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:37 Heat of formation + Delta-G solvation = -13.497430 kcal Electronic energy + Delta-G solvation = -28951.733834 eV Core-core repulsion = 25135.495203 eV Total energy + Delta-G solvation = -3816.238631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.97052 -39.25430 -38.05430 -35.52614 -34.38731 -33.66547 -32.14411 -31.81617 -30.24553 -30.01015 -28.72475 -25.43959 -25.05211 -24.23909 -23.82886 -22.79187 -21.27258 -20.67704 -20.43690 -19.43764 -18.08472 -17.09933 -16.98789 -16.25276 -15.91423 -15.38905 -15.16073 -15.03646 -14.88805 -14.45396 -14.34519 -13.91465 -13.69998 -13.54064 -13.40833 -13.17167 -12.71908 -12.55549 -12.51883 -12.48943 -12.07422 -11.84529 -11.62290 -11.58828 -11.50207 -11.36975 -11.17879 -11.07700 -10.97225 -10.89950 -10.87788 -10.53635 -10.21150 -9.84347 -9.66141 -9.50263 -9.33828 -9.22215 -8.63256 -8.23315 -7.32884 -7.31488 -6.77120 -4.42878 1.39726 2.72847 2.81679 3.04632 3.07611 3.15964 3.29325 3.50437 3.90877 3.94068 4.31397 4.44891 4.56041 4.61908 4.72020 4.81865 4.91589 5.08529 5.17120 5.19575 5.24766 5.38951 5.49803 5.51798 5.54237 5.56493 5.66814 5.70541 5.77230 5.79296 5.86994 5.91071 5.94220 5.97507 6.23488 6.26412 6.32999 6.38313 6.48901 6.65188 6.70178 6.83735 6.87353 7.02163 7.05577 7.14773 7.28308 7.54176 7.67908 7.84273 7.96239 7.99935 8.20668 8.43115 8.56136 8.83359 8.89580 10.18310 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002301 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.253321 B =12164.799988 C =12554.143084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.113 3.887 10 C -0.157 4.157 11 C -0.105 4.105 12 C -0.232 4.232 13 C -0.081 4.081 14 C -0.169 4.169 15 C -0.069 4.069 16 C 0.113 3.887 17 N -0.598 5.598 18 C 0.548 3.452 19 O -0.558 6.558 20 C -0.204 4.204 21 C -0.066 4.066 22 C -0.101 4.101 23 H 0.078 0.922 24 C -0.111 4.111 25 C -0.158 4.158 26 C 0.054 3.946 27 N -0.684 5.684 28 C 0.064 3.936 29 C 0.156 3.844 30 H 0.280 0.720 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.342 0.658 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 -18.160 -1.820 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.176 4.176 11 C -0.124 4.124 12 C -0.251 4.251 13 C -0.082 4.082 14 C -0.170 4.170 15 C -0.106 4.106 16 C -0.009 4.009 17 N -0.329 5.329 18 C 0.338 3.662 19 O -0.439 6.439 20 C -0.225 4.225 21 C -0.087 4.087 22 C -0.121 4.121 23 H 0.097 0.903 24 C -0.149 4.149 25 C -0.197 4.197 26 C -0.076 4.076 27 N -0.312 5.312 28 C -0.066 4.066 29 C 0.033 3.967 30 H 0.091 0.909 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.159 0.841 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.489 -17.907 -1.776 18.814 hybrid contribution -0.912 0.912 0.586 1.416 sum 4.578 -16.995 -1.190 17.641 Atomic orbital electron populations 1.69792 1.07445 1.29223 1.36013 1.25870 0.94773 1.01134 0.92355 0.86379 0.80081 0.80364 0.79982 1.18895 1.20397 1.18992 1.19516 0.96445 0.90520 1.42803 0.90353 1.17596 0.91369 0.91424 0.88530 1.21201 0.99240 0.96446 1.00709 1.20587 0.98673 0.93486 0.99612 1.20167 1.01111 0.96991 1.06862 1.19094 0.97189 0.92673 0.99209 1.19294 1.00176 0.93321 1.04225 1.20433 0.96509 0.96773 0.96915 1.21719 1.01995 0.83830 0.93368 1.47964 1.14095 1.21314 1.49519 1.18453 0.83178 0.82561 0.81981 1.90733 1.26293 1.77760 1.49129 1.22788 1.00944 0.96730 1.02045 1.23520 0.99061 0.92419 0.93691 1.21178 1.01257 0.93454 0.96224 0.90343 1.21566 1.02586 0.92880 0.97878 1.22268 1.00472 0.98795 0.98168 1.22060 0.99229 0.91864 0.94413 1.60679 1.34040 1.02146 1.34311 1.22065 0.98889 0.94291 0.91318 1.20533 0.82883 0.96976 0.96265 0.90887 0.86764 0.89283 0.89447 0.90000 0.92676 0.91408 0.89572 0.85512 0.85597 0.91376 0.91550 0.91220 0.91867 0.90818 0.90712 0.84079 0.90075 0.90447 0.91454 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.20 11.07 55.55 0.62 -19.58 16 2 C 0.08 1.85 5.19 -17.34 -0.09 1.76 16 3 Si 0.91 18.42 29.58 -169.99 -5.03 13.39 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -11.75 7.91 -37.74 -0.30 -12.04 16 8 H 0.08 1.92 7.01 -52.49 -0.37 1.55 16 9 C 0.11 2.88 5.53 -106.67 -0.59 2.29 16 10 C -0.16 -3.92 8.62 -38.99 -0.34 -4.26 16 11 C -0.11 -2.35 10.03 -39.76 -0.40 -2.75 16 12 C -0.23 -4.79 9.63 -39.15 -0.38 -5.17 16 13 C -0.08 -1.67 5.82 -104.59 -0.61 -2.28 16 14 C -0.17 -3.86 5.81 -103.91 -0.60 -4.47 16 15 C -0.07 -1.40 4.97 -28.05 -0.14 -1.54 16 16 C 0.11 2.02 6.45 -3.75 -0.02 2.00 16 17 N -0.60 -10.40 2.94 -175.77 -0.52 -10.91 16 18 C 0.55 9.34 7.65 -12.67 -0.10 9.24 16 19 O -0.56 -11.01 15.73 5.27 0.08 -10.93 16 20 C -0.20 -2.68 8.94 -37.81 -0.34 -3.02 16 21 C -0.07 -0.75 8.35 -36.13 -0.30 -1.05 16 22 C -0.10 -0.86 2.63 -91.69 -0.24 -1.10 16 23 H 0.08 0.66 7.81 -51.93 -0.41 0.25 16 24 C -0.11 -0.85 5.27 -26.61 -0.14 -0.99 16 25 C -0.16 -0.99 6.08 -26.65 -0.16 -1.15 16 26 C 0.05 0.36 6.56 -3.84 -0.03 0.33 16 27 N -0.68 -5.37 6.87 -113.82 -0.78 -6.15 16 28 C 0.06 0.55 5.82 -3.84 -0.02 0.52 16 29 C 0.16 2.58 6.10 -5.03 -0.03 2.55 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 31 H 0.11 2.98 6.43 -52.48 -0.34 2.64 16 32 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 33 H 0.09 1.56 8.05 -52.49 -0.42 1.13 16 34 H 0.08 1.70 7.09 -51.93 -0.37 1.33 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.52 7.07 -51.93 -0.37 1.16 16 38 H 0.13 1.45 5.83 -52.49 -0.31 1.14 16 39 H 0.13 1.55 7.50 -52.48 -0.39 1.15 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.34 2.37 8.86 -39.29 -0.35 2.02 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.08 1.17 5.52 -51.93 -0.29 0.88 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -28.43 391.97 -12.36 -40.79 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.81 Total: 8.62 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -4.82 Total: -21.13 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.68 Total: -36.65 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.43 -12.36 -40.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877112319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.291 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds