Wall clock time and date at job start Wed Apr 1 2020 00:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86802 * 120.00306 * 2 1 4 4 H 1.48496 * 109.46835 * 274.68543 * 3 2 1 5 5 H 1.48502 * 109.46741 * 34.68826 * 3 2 1 6 6 H 1.48493 * 109.46773 * 154.68439 * 3 2 1 7 7 C 1.39945 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 196.58157 * 7 2 1 9 9 C 1.41399 * 119.99977 * 16.58083 * 7 2 1 10 10 C 1.40434 * 119.97306 * 26.27850 * 9 7 2 11 11 C 1.37605 * 119.54761 * 180.57820 * 10 9 7 12 12 C 1.38382 * 119.98499 * 359.63998 * 11 10 9 13 13 C 1.39249 * 121.04906 * 0.12270 * 12 11 10 14 14 C 1.37091 * 119.98675 * 359.61740 * 13 12 11 15 15 C 1.50563 * 122.99528 * 181.06455 * 14 13 12 16 16 C 1.52784 * 110.87987 * 339.67524 * 15 14 13 17 17 N 1.47234 * 107.86330 * 47.38219 * 16 15 14 18 18 C 1.34772 * 121.33967 * 116.01751 * 17 16 15 19 19 O 1.21619 * 120.00261 * 354.90713 * 18 17 16 20 20 C 1.47106 * 120.00002 * 174.90581 * 18 17 16 21 21 C 1.32994 * 119.99934 * 174.91460 * 20 18 17 22 22 C 1.50705 * 119.99901 * 179.97438 * 21 20 18 23 23 H 1.08997 * 109.49778 * 0.08318 * 22 21 20 24 24 C 1.53124 * 109.50186 * 120.19760 * 22 21 20 25 25 C 1.53113 * 109.16042 * 177.59574 * 24 22 21 26 26 C 1.53034 * 109.27862 * 302.34839 * 25 24 22 27 27 N 1.46843 * 109.52612 * 59.18210 * 26 25 24 28 28 C 1.46851 * 111.19479 * 298.25697 * 27 26 25 29 29 C 1.46668 * 117.32123 * 295.99339 * 17 16 15 30 30 H 0.96997 * 119.99916 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.22588 * 0.34452 * 10 9 7 32 32 H 1.07998 * 120.00476 * 179.97438 * 11 10 9 33 33 H 1.08000 * 119.47453 * 180.15143 * 12 11 10 34 34 H 1.09000 * 109.19535 * 100.03434 * 15 14 13 35 35 H 1.09005 * 109.19519 * 219.31195 * 15 14 13 36 36 H 1.09003 * 109.78444 * 166.97446 * 16 15 14 37 37 H 1.09006 * 109.78118 * 287.73445 * 16 15 14 38 38 H 1.08000 * 119.99924 * 354.91956 * 20 18 17 39 39 H 1.08000 * 120.00142 * 0.02562 * 21 20 18 40 40 H 1.09000 * 109.52063 * 297.50775 * 24 22 21 41 41 H 1.09009 * 109.51565 * 57.68983 * 24 22 21 42 42 H 1.08997 * 109.50058 * 182.40399 * 25 24 22 43 43 H 1.08998 * 109.53285 * 62.30927 * 25 24 22 44 44 H 1.09005 * 109.46501 * 299.15927 * 26 25 24 45 45 H 1.09000 * 109.46070 * 179.19339 * 26 25 24 46 46 H 1.00896 * 111.00374 * 174.16146 * 27 26 25 47 47 H 1.09002 * 109.46122 * 301.72542 * 28 27 26 48 48 H 1.09000 * 109.46318 * 181.75777 * 28 27 26 49 49 H 1.09004 * 109.42777 * 284.32411 * 29 17 16 50 50 H 1.09001 * 109.42961 * 164.47210 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3907 2.1035 -1.3954 5 1 1.4928 2.6220 0.7968 6 1 3.5858 1.4134 0.5987 7 6 2.0079 -1.2120 -0.0005 8 1 3.0542 -1.2316 0.2664 9 6 1.3449 -2.4109 -0.3505 10 6 0.2241 -2.3718 -1.1957 11 6 -0.4216 -3.5426 -1.5211 12 6 0.0392 -4.7483 -1.0220 13 6 1.1523 -4.8016 -0.1870 14 6 1.8146 -3.6485 0.1463 15 6 3.0380 -3.6301 1.0238 16 6 3.1274 -4.9055 1.8603 17 7 2.8943 -6.0504 0.9644 18 6 3.8548 -6.9673 0.7342 19 8 4.9688 -6.8101 1.1962 20 6 3.5559 -8.1583 -0.0758 21 6 4.5274 -9.0113 -0.3878 22 6 4.2210 -10.2318 -1.2171 23 1 3.1600 -10.2451 -1.4666 24 6 5.0494 -10.1962 -2.5044 25 6 4.7773 -11.4680 -3.3123 26 6 5.1152 -12.6916 -2.4575 27 7 4.2963 -12.6801 -1.2387 28 6 4.5750 -11.4911 -0.4231 29 6 1.5745 -6.1533 0.3329 30 1 -0.4850 0.8400 0.0004 31 1 -0.1309 -1.4289 -1.5847 32 1 -1.2845 -3.5211 -2.1701 33 1 -0.4724 -5.6624 -1.2846 34 1 3.9267 -3.5488 0.3980 35 1 2.9889 -2.7679 1.6890 36 1 4.1177 -4.9838 2.3090 37 1 2.3684 -4.8876 2.6425 38 1 2.5475 -8.3400 -0.4171 39 1 5.5357 -8.8298 -0.0461 40 1 4.7692 -9.3232 -3.0938 41 1 6.1090 -10.1431 -2.2542 42 1 5.3964 -11.4686 -4.2094 43 1 3.7255 -11.5016 -3.5961 44 1 6.1706 -12.6650 -2.1863 45 1 4.9090 -13.5991 -3.0249 46 1 4.4315 -13.5251 -0.7042 47 1 5.6329 -11.4701 -0.1613 48 1 3.9764 -11.5267 0.4872 49 1 0.8478 -6.5027 1.0664 50 1 1.6226 -6.8612 -0.4945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877112320.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:40 Heat of formation + Delta-G solvation = -27.078135 kcal Electronic energy + Delta-G solvation = -28883.732030 eV Core-core repulsion = 25066.904495 eV Total energy + Delta-G solvation = -3816.827535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30217 -39.89933 -39.47362 -37.05150 -35.50266 -35.24995 -33.68914 -32.65674 -31.80420 -31.10164 -30.18238 -27.12703 -26.55518 -25.34285 -24.64164 -23.98984 -22.43773 -22.21845 -20.80584 -20.70953 -19.36462 -18.81377 -18.32390 -17.38457 -17.25532 -16.96353 -16.53920 -16.09790 -15.60018 -15.46474 -15.33788 -15.20423 -15.04922 -14.75112 -14.56831 -14.39134 -14.19981 -14.05141 -13.97617 -13.48751 -13.33656 -13.16091 -13.10431 -12.98963 -12.79488 -12.66148 -12.57799 -12.14428 -12.07534 -11.89644 -11.72307 -11.61196 -11.49647 -11.42216 -11.08243 -11.02322 -10.85143 -10.40804 -9.65361 -9.38816 -9.17005 -9.04206 -8.61667 -6.31677 0.35715 0.98248 1.06824 1.36191 1.48297 1.50470 2.01062 2.19255 2.28541 2.73183 3.21124 3.58727 3.67401 3.84335 3.91698 3.94007 4.04175 4.11238 4.19062 4.27478 4.29796 4.40294 4.42939 4.45359 4.52566 4.60905 4.64766 4.66133 4.75935 4.78800 4.81915 4.89852 4.93585 4.98919 5.04291 5.13084 5.14008 5.20727 5.26563 5.29273 5.33490 5.36567 5.48791 5.54377 5.59898 5.77745 6.00373 6.06442 6.17934 6.19458 6.33960 6.50983 6.53382 6.73482 6.97171 7.07385 7.12987 8.34526 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.002248 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.434820 B =12452.724431 C =12911.838938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.492 4.492 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.194 4.194 11 C -0.111 4.111 12 C -0.227 4.227 13 C -0.081 4.081 14 C -0.192 4.192 15 C -0.060 4.060 16 C 0.120 3.880 17 N -0.603 5.603 18 C 0.543 3.457 19 O -0.594 6.594 20 C -0.216 4.216 21 C -0.046 4.046 22 C -0.057 4.057 23 H 0.091 0.909 24 C -0.116 4.116 25 C -0.116 4.116 26 C 0.054 3.946 27 N -0.696 5.696 28 C 0.068 3.932 29 C 0.160 3.840 30 H 0.286 0.714 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.153 0.847 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.086 0.914 46 H 0.354 0.646 47 H 0.033 0.967 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -21.345 -2.878 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.214 4.214 11 C -0.129 4.129 12 C -0.246 4.246 13 C -0.081 4.081 14 C -0.193 4.193 15 C -0.098 4.098 16 C -0.003 4.003 17 N -0.333 5.333 18 C 0.335 3.665 19 O -0.478 6.478 20 C -0.237 4.237 21 C -0.066 4.066 22 C -0.075 4.075 23 H 0.110 0.890 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.075 4.075 27 N -0.328 5.328 28 C -0.061 4.061 29 C 0.038 3.962 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.146 0.854 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.171 0.829 39 H 0.129 0.871 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.105 0.895 46 H 0.173 0.827 47 H 0.051 0.949 48 H 0.098 0.902 49 H 0.111 0.889 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.285 -20.832 -2.916 21.689 hybrid contribution 0.949 1.446 0.395 1.774 sum 6.233 -19.386 -2.521 20.519 Atomic orbital electron populations 1.69878 1.08792 1.30231 1.36229 1.26661 0.95445 1.04185 0.91527 0.85309 0.79240 0.76678 0.79226 1.19008 1.19248 1.18441 1.19765 0.97682 0.92177 1.42508 0.90866 1.17977 0.92110 0.92654 0.89609 1.21194 1.00569 0.97124 1.02521 1.20894 0.98973 0.93186 0.99832 1.20607 1.00504 0.97307 1.06178 1.19580 0.96337 0.93823 0.98382 1.19606 1.01191 0.93107 1.05432 1.20290 0.94991 0.97399 0.97087 1.21562 1.02434 0.84265 0.92025 1.48026 1.14243 1.24956 1.46068 1.19115 0.83211 0.83866 0.80267 1.90713 1.23093 1.79212 1.54769 1.22727 1.02270 0.95000 1.03660 1.23713 0.98603 0.93075 0.91239 1.20415 1.01894 0.90941 0.94286 0.89041 1.21608 0.99589 0.98901 0.95254 1.21582 1.02533 0.93249 0.97989 1.21995 0.94580 0.99251 0.91649 1.60209 1.58959 1.05055 1.08565 1.21817 0.99177 0.89428 0.95694 1.20658 0.82765 0.94612 0.98142 0.90358 0.88733 0.87187 0.85424 0.94282 0.91353 0.89701 0.90054 0.82915 0.87052 0.91721 0.92005 0.90291 0.91328 0.95088 0.89546 0.82652 0.94896 0.90151 0.88868 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.35 10.99 21.83 0.24 -43.11 16 2 C 0.04 1.85 5.14 85.26 0.44 2.29 16 3 Si 0.97 38.98 29.59 68.60 2.03 41.01 16 4 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.49 -26.38 8.02 23.46 0.19 -26.19 16 8 H 0.07 3.85 6.85 -2.91 -0.02 3.83 16 9 C 0.08 4.19 5.57 -21.19 -0.12 4.08 16 10 C -0.19 -10.17 8.65 22.66 0.20 -9.98 16 11 C -0.11 -4.94 10.03 22.15 0.22 -4.72 16 12 C -0.23 -8.94 9.63 22.55 0.22 -8.73 16 13 C -0.08 -3.24 5.82 -19.84 -0.12 -3.35 16 14 C -0.19 -9.02 5.82 -19.40 -0.11 -9.13 16 15 C -0.06 -2.55 4.96 29.73 0.15 -2.40 16 16 C 0.12 4.28 6.44 86.17 0.55 4.83 16 17 N -0.60 -20.10 2.94 -828.24 -2.43 -22.53 16 18 C 0.54 17.90 7.66 86.57 0.66 18.56 16 19 O -0.59 -23.56 15.73 -4.09 -0.06 -23.63 16 20 C -0.22 -5.20 8.82 23.43 0.21 -4.99 16 21 C -0.05 -0.97 8.35 24.52 0.20 -0.76 16 22 C -0.06 -0.91 2.65 -11.49 -0.03 -0.94 16 23 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 24 C -0.12 -1.77 5.27 30.67 0.16 -1.60 16 25 C -0.12 -1.44 6.09 30.64 0.19 -1.25 16 26 C 0.05 0.61 6.55 86.33 0.57 1.17 16 27 N -0.70 -8.68 6.85 -514.01 -3.52 -12.20 16 28 C 0.07 0.97 5.81 86.32 0.50 1.47 16 29 C 0.16 4.82 5.98 85.65 0.51 5.33 16 30 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 31 H 0.09 5.24 6.24 -2.91 -0.02 5.22 16 32 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 33 H 0.13 4.01 8.05 -2.91 -0.02 3.98 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 3.01 7.02 -2.38 -0.02 3.00 16 36 H 0.08 3.03 7.09 -2.39 -0.02 3.01 16 37 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 38 H 0.15 2.87 6.08 -2.91 -0.02 2.85 16 39 H 0.11 2.68 7.50 -2.91 -0.02 2.66 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 45 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.35 3.24 8.90 -89.70 -0.80 2.44 16 47 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 49 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.11 2.75 5.80 -2.39 -0.01 2.74 16 Total: -1.00 -65.00 391.92 0.99 -64.01 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.15 Total: 32.76 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 4.59 Total: -36.31 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -5.71 Total: -77.84 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Total: -65.00 0.99 -64.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877112320.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.927 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds