Wall clock time and date at job start Wed Apr 1 2020 00:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86799 * 120.00330 * 2 1 4 4 H 1.48498 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47084 * 299.99634 * 3 2 1 6 6 H 1.48506 * 109.46824 * 59.99704 * 3 2 1 7 7 C 1.39950 * 119.99389 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99426 * 195.63298 * 7 2 1 9 9 C 1.41389 * 120.00080 * 15.63500 * 7 2 1 10 10 C 1.40440 * 119.97091 * 27.06858 * 9 7 2 11 11 C 1.37606 * 119.54180 * 180.35991 * 10 9 7 12 12 C 1.38382 * 119.99445 * 0.17531 * 11 10 9 13 13 C 1.39241 * 121.04094 * 359.89234 * 12 11 10 14 14 C 1.37093 * 119.98807 * 359.50131 * 13 12 11 15 15 C 1.50563 * 122.97681 * 181.65569 * 14 13 12 16 16 C 1.52793 * 110.86676 * 339.22616 * 15 14 13 17 17 N 1.47226 * 107.86633 * 47.48874 * 16 15 14 18 18 C 1.34777 * 121.32294 * 116.12268 * 17 16 15 19 19 O 1.21283 * 119.99758 * 5.22802 * 18 17 16 20 20 C 1.50698 * 120.00337 * 185.22839 * 18 17 16 21 21 C 1.54998 * 113.19993 * 59.34787 * 20 18 17 22 22 C 1.56383 * 103.65263 * 147.04569 * 21 20 18 23 23 N 1.48235 * 106.92102 * 1.06653 * 22 21 20 24 24 C 1.48798 * 105.17765 * 332.48063 * 23 22 21 25 25 C 1.47678 * 108.91241 * 88.13624 * 23 22 21 26 26 C 1.52995 * 109.27829 * 312.91852 * 25 23 22 27 27 C 1.53154 * 110.09168 * 304.78516 * 26 25 23 28 28 C 1.46655 * 117.35652 * 296.09346 * 17 16 15 29 29 H 0.96996 * 119.99426 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.23027 * 0.33801 * 10 9 7 31 31 H 1.08004 * 120.00097 * 180.14391 * 11 10 9 32 32 H 1.07995 * 119.47629 * 179.91131 * 12 11 10 33 33 H 1.09007 * 109.20141 * 99.58511 * 15 14 13 34 34 H 1.09002 * 109.19861 * 218.86627 * 15 14 13 35 35 H 1.08996 * 109.78090 * 287.89142 * 16 15 14 36 36 H 1.09007 * 109.77968 * 167.08053 * 16 15 14 37 37 H 1.08997 * 110.37895 * 265.30223 * 21 20 18 38 38 H 1.09002 * 110.37803 * 27.66411 * 21 20 18 39 39 H 1.09000 * 109.93971 * 241.66922 * 22 21 20 40 40 H 1.09003 * 109.90524 * 120.45441 * 22 21 20 41 41 H 1.09005 * 111.68798 * 284.22030 * 24 23 22 42 42 H 1.08999 * 110.18096 * 160.56036 * 24 23 22 43 43 H 1.09003 * 109.50264 * 192.98002 * 25 23 22 44 44 H 1.08994 * 109.53893 * 72.87859 * 25 23 22 45 45 H 1.09001 * 109.36430 * 184.60018 * 26 25 23 46 46 H 1.08994 * 109.26835 * 64.91421 * 26 25 23 47 47 H 1.08995 * 109.63424 * 294.28793 * 27 26 25 48 48 H 1.09002 * 109.79172 * 173.79957 * 27 26 25 49 49 H 1.09004 * 109.42997 * 284.32160 * 28 17 16 50 50 H 1.09000 * 109.42827 * 164.47813 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3462 0.0006 5 1 1.8838 2.3963 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2121 0.0005 8 1 3.0580 -1.2293 0.2526 9 6 1.3401 -2.4140 -0.3289 10 6 0.2172 -2.3843 -1.1718 11 6 -0.4305 -3.5584 -1.4807 12 6 0.0235 -4.7570 -0.9588 13 6 1.1346 -4.8001 -0.1208 14 6 1.8032 -3.6445 0.1907 15 6 3.0325 -3.6178 1.0597 16 6 3.1168 -4.8762 1.9223 17 7 2.8707 -6.0377 1.0518 18 6 3.8229 -6.9673 0.8381 19 8 4.8740 -6.9083 1.4403 20 6 3.5816 -8.0801 -0.1491 21 6 3.2980 -7.5712 -1.5855 22 6 3.9171 -8.6794 -2.4987 23 7 4.4683 -9.7212 -1.5996 24 6 4.8129 -9.0067 -0.3407 25 6 3.4064 -10.7010 -1.2947 26 6 2.1266 -9.9558 -0.9105 27 6 2.4060 -8.9927 0.2471 28 6 1.5481 -6.1435 0.4270 29 1 -0.4849 0.8401 -0.0004 30 1 -0.1358 -1.4464 -1.5745 31 1 -1.2935 -3.5445 -2.1301 32 1 -0.4921 -5.6733 -1.2056 33 1 3.9178 -3.5572 0.4266 34 1 2.9950 -2.7414 1.7068 35 1 2.3614 -4.8366 2.7071 36 1 4.1088 -4.9524 2.3676 37 1 2.2241 -7.4941 -1.7556 38 1 3.7793 -6.6069 -1.7485 39 1 4.7134 -8.2551 -3.1102 40 1 3.1449 -9.1083 -3.1374 41 1 5.7271 -8.4225 -0.4464 42 1 4.8986 -9.7157 0.4827 43 1 3.7222 -11.3335 -0.4650 44 1 3.2179 -11.3192 -2.1724 45 1 1.3667 -10.6756 -0.6065 46 1 1.7667 -9.3919 -1.7710 47 1 2.6675 -9.5599 1.1403 48 1 1.5219 -8.3863 0.4442 49 1 0.8212 -6.4714 1.1701 50 1 1.5878 -6.8695 -0.3851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899151333.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:25 Heat of formation + Delta-G solvation = -0.350854 kcal Electronic energy + Delta-G solvation = -31127.208879 eV Core-core repulsion = 27311.540326 eV Total energy + Delta-G solvation = -3815.668553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50475 -39.29098 -37.93442 -35.57441 -33.72702 -33.08279 -32.19196 -31.41086 -30.16253 -29.24252 -28.78544 -25.56649 -25.16346 -24.59233 -23.73825 -22.47618 -21.43179 -20.66202 -20.33675 -19.36821 -18.12338 -17.18653 -16.77010 -16.16590 -16.06525 -15.44841 -15.28111 -14.93535 -14.49478 -14.10935 -14.05028 -13.80472 -13.46497 -13.39858 -13.02870 -12.93082 -12.83111 -12.74307 -12.53743 -12.34160 -11.90774 -11.78426 -11.64824 -11.54056 -11.44632 -11.22033 -11.18160 -11.05500 -10.92129 -10.89587 -10.74292 -10.57554 -10.46954 -10.21869 -9.77244 -9.44805 -9.35013 -9.23679 -8.67525 -8.28533 -7.38065 -7.34528 -6.82614 -4.44957 2.67571 2.77382 2.80249 3.03380 3.08319 3.12512 3.23906 3.82318 3.87462 4.33218 4.48751 4.51367 4.60862 4.77033 4.85289 4.92704 4.96127 5.18733 5.26824 5.31295 5.35649 5.45594 5.50818 5.60563 5.63634 5.67238 5.70675 5.76424 5.80912 5.82635 5.87250 5.94211 5.94590 5.99308 6.07518 6.08326 6.24381 6.30470 6.44107 6.59735 6.66814 6.77735 6.81325 6.83293 7.01618 7.13616 7.26355 7.51260 7.64795 7.81707 7.94894 7.97836 8.18122 8.38183 8.53919 8.80183 8.87199 10.11701 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.003260 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.913099 B = 8585.765669 C = 9166.532286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.460 4.460 8 H 0.080 0.920 9 C 0.113 3.887 10 C -0.161 4.161 11 C -0.103 4.103 12 C -0.236 4.236 13 C -0.078 4.078 14 C -0.172 4.172 15 C -0.068 4.068 16 C 0.112 3.888 17 N -0.598 5.598 18 C 0.541 3.459 19 O -0.549 6.549 20 C -0.117 4.117 21 C -0.136 4.136 22 C 0.030 3.970 23 N -0.496 5.496 24 C 0.060 3.940 25 C 0.032 3.968 26 C -0.155 4.155 27 C -0.116 4.116 28 C 0.145 3.855 29 H 0.280 0.720 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -14.458 -1.754 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.098 0.902 9 C 0.110 3.890 10 C -0.181 4.181 11 C -0.121 4.121 12 C -0.256 4.256 13 C -0.079 4.079 14 C -0.173 4.173 15 C -0.106 4.106 16 C -0.010 4.010 17 N -0.329 5.329 18 C 0.328 3.672 19 O -0.427 6.427 20 C -0.122 4.122 21 C -0.174 4.174 22 C -0.098 4.098 23 N -0.216 5.216 24 C -0.069 4.069 25 C -0.096 4.096 26 C -0.193 4.193 27 C -0.154 4.154 28 C 0.022 3.978 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.907 -14.593 -1.683 14.975 hybrid contribution -0.854 1.439 0.371 1.714 sum 2.054 -13.154 -1.312 13.378 Atomic orbital electron populations 1.69824 1.07545 1.29125 1.35358 1.25901 0.94724 1.01269 0.92245 0.86302 0.81061 0.81072 0.78596 1.18345 1.19727 1.19972 1.19624 0.97436 0.90834 1.41056 0.90194 1.17594 0.91312 0.91393 0.88688 1.21227 0.99234 0.96687 1.00939 1.20576 0.98566 0.93349 0.99659 1.20127 1.01118 0.96561 1.07760 1.19078 0.97061 0.92442 0.99288 1.19238 1.00192 0.92963 1.04927 1.20423 0.96464 0.96322 0.97392 1.21723 1.01968 0.84678 0.92589 1.48001 1.13607 1.23843 1.47475 1.19841 0.83186 0.82034 0.82118 1.90652 1.26129 1.75899 1.50034 1.22560 0.99126 0.94979 0.95491 1.23447 1.02093 0.99895 0.92005 1.23503 0.99058 0.91314 0.95962 1.66437 1.32881 1.11904 1.10363 1.23341 0.96509 0.95031 0.91994 1.22619 0.90164 0.95338 1.01525 1.22256 0.99079 0.99028 0.98978 1.22043 0.97500 0.97234 0.98617 1.20866 0.82777 0.97230 0.96881 0.90923 0.86601 0.89367 0.89624 0.92739 0.90093 0.91450 0.89604 0.89795 0.90353 0.89945 0.90692 0.88938 0.90073 0.90685 0.90363 0.91051 0.90834 0.91320 0.90262 0.91782 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.76 10.99 55.55 0.61 -19.15 16 2 C 0.08 1.84 5.16 -17.34 -0.09 1.75 16 3 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -11.52 8.00 -37.74 -0.30 -11.82 16 8 H 0.08 1.94 6.87 -52.49 -0.36 1.58 16 9 C 0.11 2.81 5.56 -106.67 -0.59 2.22 16 10 C -0.16 -3.99 8.65 -38.98 -0.34 -4.33 16 11 C -0.10 -2.27 10.03 -39.76 -0.40 -2.67 16 12 C -0.24 -4.79 9.63 -39.16 -0.38 -5.16 16 13 C -0.08 -1.57 5.82 -104.59 -0.61 -2.18 16 14 C -0.17 -3.85 5.81 -103.91 -0.60 -4.45 16 15 C -0.07 -1.37 4.97 -28.06 -0.14 -1.51 16 16 C 0.11 1.97 6.45 -3.75 -0.02 1.95 16 17 N -0.60 -10.02 2.94 -174.38 -0.51 -10.53 16 18 C 0.54 8.90 6.78 -10.99 -0.07 8.82 16 19 O -0.55 -10.55 15.68 5.55 0.09 -10.46 16 20 C -0.12 -1.50 0.68 -152.86 -0.10 -1.61 16 21 C -0.14 -1.67 4.65 -23.86 -0.11 -1.78 16 22 C 0.03 0.32 6.25 -1.27 -0.01 0.31 16 23 N -0.50 -5.46 6.06 -227.44 -1.38 -6.84 16 24 C 0.06 0.75 5.48 -1.56 -0.01 0.74 16 25 C 0.03 0.29 5.84 -3.40 -0.02 0.27 16 26 C -0.15 -1.36 5.52 -26.65 -0.15 -1.50 16 27 C -0.12 -1.25 4.65 -26.12 -0.12 -1.37 16 28 C 0.14 2.33 4.44 -5.03 -0.02 2.31 16 29 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 30 H 0.12 2.99 6.26 -52.49 -0.33 2.66 16 31 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.09 1.50 8.05 -52.49 -0.42 1.08 16 33 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.08 1.65 7.01 -51.93 -0.36 1.28 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.49 7.07 -51.92 -0.37 1.12 16 37 H 0.08 1.01 5.22 -51.93 -0.27 0.73 16 38 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.69 6.94 -51.93 -0.36 0.33 16 41 H 0.09 1.29 7.96 -51.93 -0.41 0.87 16 42 H 0.08 0.97 7.63 -51.93 -0.40 0.57 16 43 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.66 5.36 -51.93 -0.28 0.38 16 47 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 48 H 0.08 0.87 5.22 -51.93 -0.27 0.60 16 49 H 0.06 0.97 8.03 -51.93 -0.42 0.56 16 50 H 0.09 1.31 2.81 -51.93 -0.15 1.16 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -27.39 366.34 -12.10 -39.49 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.31 Total: 8.87 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -4.09 Total: -20.02 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -1.28 Total: -36.52 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.39 -12.10 -39.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899151333.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.139 kcal (2) G-P(sol) polarization free energy of solvation -27.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds