Wall clock time and date at job start Wed Apr 1 2020 00:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 119.99668 * 2 1 4 4 H 1.48497 * 109.47216 * 239.99979 * 3 2 1 5 5 H 1.48503 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47015 * 119.99921 * 3 2 1 7 7 C 1.38812 * 120.00621 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00389 * 155.46606 * 7 2 1 9 9 N 1.36936 * 119.99579 * 335.47106 * 7 2 1 10 10 C 1.46900 * 120.69231 * 327.75986 * 9 7 2 11 11 C 1.52661 * 109.34630 * 235.31185 * 10 9 7 12 12 C 1.53192 * 109.42794 * 303.77106 * 11 10 9 13 13 C 1.52625 * 109.35382 * 58.92681 * 12 11 10 14 14 C 1.53462 * 113.68346 * 74.05970 * 13 12 11 15 15 N 1.47668 * 85.96772 * 91.17423 * 14 13 12 16 16 C 1.34780 * 134.45621 * 204.28482 * 15 14 13 17 17 O 1.21549 * 120.00320 * 175.04540 * 16 15 14 18 18 C 1.47854 * 119.99743 * 355.04684 * 16 15 14 19 19 C 1.39489 * 120.04394 * 335.82143 * 18 16 15 20 20 C 1.37925 * 119.76794 * 179.81183 * 19 18 16 21 21 C 1.38258 * 120.09705 * 0.41252 * 20 19 18 22 22 C 1.38616 * 120.52650 * 359.81970 * 21 20 19 23 23 C 1.37975 * 119.93074 * 359.97438 * 22 21 20 24 24 C 1.51350 * 109.82793 * 179.97438 * 23 22 21 25 25 C 1.54347 * 105.15484 * 17.16898 * 24 23 22 26 26 C 1.51398 * 130.30782 * 179.97438 * 22 21 20 27 27 C 1.47672 * 91.09248 * 24.28518 * 15 14 13 28 28 C 1.47127 * 120.68777 * 148.03823 * 9 7 2 29 29 H 0.97005 * 119.99421 * 174.65888 * 1 2 3 30 30 H 1.09001 * 109.53198 * 355.24145 * 10 9 7 31 31 H 1.09001 * 109.52945 * 115.47282 * 10 9 7 32 32 H 1.08996 * 109.56521 * 183.71575 * 11 10 9 33 33 H 1.08999 * 109.34795 * 63.68582 * 11 10 9 34 34 H 1.09001 * 109.48761 * 298.95702 * 12 11 10 35 35 H 1.09005 * 109.48675 * 178.89344 * 12 11 10 36 36 H 1.09002 * 113.79534 * 205.43710 * 14 13 12 37 37 H 1.08997 * 113.79319 * 336.91383 * 14 13 12 38 38 H 1.08005 * 120.11480 * 359.97438 * 19 18 16 39 39 H 1.08000 * 119.95201 * 180.22559 * 20 19 18 40 40 H 1.08001 * 119.73476 * 179.79619 * 21 20 19 41 41 H 1.09003 * 110.30424 * 136.09200 * 24 23 22 42 42 H 1.09007 * 110.30326 * 258.25085 * 24 23 22 43 43 H 1.08997 * 110.82791 * 91.90924 * 25 24 23 44 44 H 1.09002 * 110.83231 * 215.28412 * 25 24 23 45 45 H 1.09002 * 110.30504 * 43.92242 * 26 22 21 46 46 H 1.09002 * 110.38149 * 281.81605 * 26 22 21 47 47 H 1.09002 * 113.79344 * 221.43924 * 27 15 14 48 48 H 1.09004 * 113.79077 * 89.97505 * 27 15 14 49 49 H 1.09001 * 109.63420 * 248.30685 * 28 9 7 50 50 H 1.08997 * 109.63560 * 8.92255 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0172 -1.2444 -0.3878 9 7 1.4184 -2.3343 0.4934 10 6 0.4529 -2.2556 1.5978 11 6 0.9109 -3.1646 2.7356 12 6 1.0872 -4.5919 2.2080 13 6 2.1156 -4.5909 1.0802 14 6 3.5616 -4.4198 1.5646 15 7 3.6063 -5.8946 1.6231 16 6 4.3384 -6.7901 2.3151 17 8 4.0922 -7.9769 2.2236 18 6 5.4409 -6.3288 3.1856 19 6 6.0599 -5.1034 2.9384 20 6 7.0852 -4.6769 3.7564 21 6 7.5034 -5.4653 4.8124 22 6 6.8973 -6.6865 5.0625 23 6 5.8677 -7.1225 4.2540 24 6 5.3784 -8.4735 4.7295 25 6 5.9201 -8.6155 6.1678 26 6 7.1725 -7.7141 6.1397 27 6 2.5277 -5.9953 0.6196 28 6 1.7407 -3.6554 -0.0681 29 1 -0.4849 -0.8365 -0.0782 30 1 0.3922 -1.2280 1.9563 31 1 -0.5275 -2.5796 1.2485 32 1 0.1642 -3.1600 3.5296 33 1 1.8612 -2.8018 3.1274 34 1 0.1334 -4.9604 1.8303 35 1 1.4331 -5.2378 3.0151 36 1 4.2278 -3.9889 0.8172 37 1 3.6449 -3.9384 2.5390 38 1 5.7356 -4.4897 2.1110 39 1 7.5641 -3.7270 3.5700 40 1 8.3090 -5.1270 5.4472 41 1 4.2887 -8.5019 4.7312 42 1 5.7773 -9.2650 4.0951 43 1 5.1947 -8.2475 6.8933 44 1 6.1881 -9.6504 6.3807 45 1 7.3079 -7.2243 7.1040 46 1 8.0553 -8.3016 5.8873 47 1 1.7897 -6.7657 0.8431 48 1 2.8862 -6.0332 -0.4091 49 1 0.8723 -4.0513 -0.5947 50 1 2.5808 -3.5657 -0.7567 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982169472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:43 Heat of formation + Delta-G solvation = 24.067866 kcal Electronic energy + Delta-G solvation = -30234.024449 eV Core-core repulsion = 26419.414771 eV Total energy + Delta-G solvation = -3814.609678 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.14558 -41.04645 -39.31960 -37.66000 -36.66053 -34.58845 -32.89265 -32.32948 -31.28486 -30.02982 -28.54322 -27.45728 -27.20391 -26.98830 -24.36410 -24.02159 -22.51875 -22.08238 -21.91789 -20.29110 -19.39420 -19.23127 -17.98759 -17.49151 -17.10178 -16.67885 -16.44516 -16.27442 -16.09946 -15.85133 -15.44200 -15.32577 -15.11205 -14.84439 -14.59809 -14.13075 -14.07093 -13.95837 -13.76280 -13.62548 -13.35918 -13.28657 -12.99894 -12.77138 -12.72148 -12.50210 -12.28326 -12.25081 -12.07805 -11.99100 -11.90481 -11.81299 -11.77687 -11.64196 -11.35125 -11.05741 -10.88108 -10.38857 -9.99766 -9.71139 -9.54721 -8.84323 -8.17232 -5.38600 -0.15415 0.31348 1.62549 1.69125 1.70779 1.73232 1.87310 2.68454 2.73838 3.12780 3.26807 3.34568 3.44645 3.60513 3.65169 3.73259 3.89841 4.00182 4.11421 4.13776 4.16843 4.23414 4.24589 4.29114 4.40576 4.44495 4.47158 4.50463 4.55601 4.67195 4.74179 4.76363 4.83172 4.84714 4.85633 4.90639 4.97572 4.98945 5.02724 5.09251 5.14290 5.17304 5.22294 5.27166 5.31902 5.34191 5.41057 5.47518 5.53542 5.90619 5.93360 6.45536 6.56474 6.99616 7.11529 7.81823 8.29568 9.05938 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003034 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.912381 B = 9225.930541 C =10152.231166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.072 4.072 3 Si 1.110 2.890 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.349 4.349 8 H 0.053 0.947 9 N -0.610 5.610 10 C 0.159 3.841 11 C -0.123 4.123 12 C -0.076 4.076 13 C -0.097 4.097 14 C 0.128 3.872 15 N -0.634 5.634 16 C 0.572 3.428 17 O -0.578 6.578 18 C -0.142 4.142 19 C -0.097 4.097 20 C -0.127 4.127 21 C -0.081 4.081 22 C -0.113 4.113 23 C -0.065 4.065 24 C -0.080 4.080 25 C -0.116 4.116 26 C -0.075 4.075 27 C 0.119 3.881 28 C 0.165 3.835 29 H 0.254 0.746 30 H 0.040 0.960 31 H 0.003 0.997 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.019 0.981 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.881 -13.514 12.042 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.269 4.269 3 Si 0.935 3.065 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.479 4.479 8 H 0.071 0.929 9 N -0.334 5.334 10 C 0.033 3.967 11 C -0.162 4.162 12 C -0.113 4.113 13 C -0.099 4.099 14 C 0.007 3.993 15 N -0.368 5.368 16 C 0.364 3.636 17 O -0.460 6.460 18 C -0.145 4.145 19 C -0.116 4.116 20 C -0.145 4.145 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.066 4.066 24 C -0.117 4.117 25 C -0.153 4.153 26 C -0.112 4.112 27 C -0.003 4.003 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.118 0.882 49 H 0.037 0.963 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.702 -12.621 12.144 22.867 hybrid contribution -0.476 -1.466 -0.778 1.726 sum 14.226 -14.087 11.366 23.022 Atomic orbital electron populations 1.70899 1.07752 1.29426 1.50374 1.27131 0.96536 1.04864 0.98380 0.82917 0.73890 0.72305 0.77356 1.20165 1.22396 1.20393 1.20127 0.96946 0.89240 1.41599 0.92882 1.44253 1.50777 1.02271 1.36072 1.20639 0.90552 0.97569 0.87921 1.21828 1.01193 0.95309 0.97883 1.21039 0.97781 0.96386 0.96123 1.22416 0.95164 0.94631 0.97676 1.23261 0.95588 0.78665 1.01831 1.50041 1.37331 1.08174 1.41207 1.18406 0.81047 0.84462 0.79682 1.90700 1.70688 1.17217 1.67385 1.19545 0.99108 0.97371 0.98483 1.21563 0.96260 0.93797 0.99939 1.21354 0.96931 1.01189 0.95030 1.21213 0.99234 0.92402 0.97001 1.21001 0.95921 0.96278 0.98139 1.20858 0.96155 0.96133 0.93426 1.21059 1.00363 0.92832 0.97411 1.22365 0.97112 1.01426 0.94439 1.21109 0.98943 0.94299 0.96850 1.23275 0.87592 0.96536 0.92912 1.20855 0.97944 0.84704 0.92577 0.93626 0.94168 0.97898 0.91083 0.92676 0.91602 0.92195 0.88811 0.90121 0.85028 0.82712 0.82608 0.92515 0.90539 0.90631 0.88439 0.88544 0.88674 0.89940 0.88182 0.96273 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.98 12.56 21.65 0.27 -55.71 16 2 C -0.07 -3.93 4.67 84.86 0.40 -3.53 16 3 Si 1.11 48.89 29.98 68.60 2.06 50.94 16 4 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.35 -18.25 9.46 84.03 0.79 -17.45 16 8 H 0.05 2.73 7.94 -2.91 -0.02 2.71 16 9 N -0.61 -28.26 2.80 -700.45 -1.96 -30.22 16 10 C 0.16 7.10 4.68 86.19 0.40 7.50 16 11 C -0.12 -4.30 5.99 30.55 0.18 -4.11 16 12 C -0.08 -2.35 5.02 30.53 0.15 -2.19 16 13 C -0.10 -2.97 0.87 -52.04 -0.05 -3.02 16 14 C 0.13 3.71 5.23 86.31 0.45 4.16 16 15 N -0.63 -18.97 3.42 -846.69 -2.90 -21.86 16 16 C 0.57 18.88 7.81 86.79 0.68 19.55 16 17 O -0.58 -22.21 16.18 -3.87 -0.06 -22.27 16 18 C -0.14 -4.08 5.83 -20.06 -0.12 -4.20 16 19 C -0.10 -2.37 8.82 22.50 0.20 -2.17 16 20 C -0.13 -2.43 10.03 22.20 0.22 -2.21 16 21 C -0.08 -1.38 10.03 22.36 0.22 -1.15 16 22 C -0.11 -2.24 6.13 -19.61 -0.12 -2.36 16 23 C -0.06 -1.67 6.00 -19.35 -0.12 -1.78 16 24 C -0.08 -1.86 5.51 30.51 0.17 -1.69 16 25 C -0.12 -1.74 7.08 31.50 0.22 -1.52 16 26 C -0.08 -1.01 6.77 30.52 0.21 -0.80 16 27 C 0.12 3.33 7.97 86.30 0.69 4.02 16 28 C 0.17 6.20 5.71 86.19 0.49 6.69 16 29 H 0.25 15.39 6.91 -92.70 -0.64 14.75 16 30 H 0.04 2.06 6.53 -2.39 -0.02 2.04 16 31 H 0.00 0.14 7.93 -2.39 -0.02 0.12 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 1.96 7.37 -2.39 -0.02 1.94 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.79 8.02 -2.38 -0.02 1.77 16 36 H 0.09 2.61 7.59 -2.39 -0.02 2.59 16 37 H 0.08 2.38 7.05 -2.39 -0.02 2.36 16 38 H 0.13 3.12 5.46 -2.91 -0.02 3.11 16 39 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.06 1.54 7.86 -2.39 -0.02 1.52 16 42 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 48 H 0.10 2.51 8.09 -2.39 -0.02 2.49 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.06 2.26 7.78 -2.39 -0.02 2.24 16 Total: -1.00 -68.73 387.76 3.55 -65.18 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.06 Total: 20.20 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.09 Total: -6.27 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -4.58 Total: -107.79 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.06 Total: -22.27 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.06 Total: 50.94 kcal Total: -68.73 3.55 -65.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982169472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.250 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds