Wall clock time and date at job start Wed Apr 1 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47282 * 274.42144 * 3 2 1 5 5 H 1.48496 * 109.47337 * 34.42359 * 3 2 1 6 6 H 1.48503 * 109.47097 * 154.42521 * 3 2 1 7 7 C 1.38811 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99546 * 170.06421 * 7 2 1 9 9 N 1.36930 * 120.00407 * 350.06559 * 7 2 1 10 10 C 1.47378 * 125.57776 * 348.76555 * 9 7 2 11 11 C 1.54869 * 104.81767 * 204.69751 * 10 9 7 12 12 C 1.54917 * 101.76737 * 322.92680 * 11 10 9 13 13 N 1.46498 * 112.33138 * 273.78562 * 12 11 10 14 14 C 1.34777 * 120.00086 * 298.99060 * 13 12 11 15 15 O 1.21552 * 120.00291 * 359.97438 * 14 13 12 16 16 C 1.47847 * 120.00120 * 180.02562 * 14 13 12 17 17 C 1.39596 * 120.18447 * 359.97438 * 16 14 13 18 18 C 1.37803 * 119.78618 * 180.02562 * 17 16 14 19 19 C 1.38671 * 120.40828 * 359.97438 * 18 17 16 20 20 C 1.38369 * 120.08167 * 0.02562 * 19 18 17 21 21 C 1.38239 * 119.99688 * 359.97438 * 20 19 18 22 22 C 1.51397 * 109.74512 * 179.97438 * 20 19 18 23 23 C 1.54324 * 105.17708 * 342.81597 * 22 20 19 24 24 C 1.51423 * 130.21427 * 180.02562 * 19 18 17 25 25 C 1.53578 * 109.08899 * 148.67154 * 12 11 10 26 26 C 1.55464 * 106.05872 * 247.00097 * 25 12 11 27 27 C 1.54761 * 104.36126 * 24.64198 * 26 25 12 28 28 C 1.46976 * 125.58218 * 168.76927 * 9 7 2 29 29 H 1.09001 * 111.81102 * 300.92736 * 28 9 7 30 30 H 0.96999 * 120.00116 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.36466 * 85.86191 * 10 9 7 32 32 H 1.08998 * 110.37210 * 323.53431 * 10 9 7 33 33 H 1.09001 * 110.96460 * 204.80923 * 11 10 9 34 34 H 1.08991 * 110.96790 * 81.04784 * 11 10 9 35 35 H 0.97000 * 120.00248 * 118.98629 * 13 12 11 36 36 H 1.08001 * 120.10519 * 0.04361 * 17 16 14 37 37 H 1.07996 * 119.79467 * 179.72089 * 18 17 16 38 38 H 1.07991 * 119.95183 * 180.02562 * 21 20 19 39 39 H 1.08993 * 110.30344 * 101.70974 * 22 20 19 40 40 H 1.08999 * 110.30190 * 223.86683 * 22 20 19 41 41 H 1.09000 * 110.79859 * 268.15658 * 23 22 20 42 42 H 1.09006 * 110.99704 * 144.69936 * 23 22 20 43 43 H 1.09005 * 110.29752 * 316.15879 * 24 19 18 44 44 H 1.08998 * 110.30104 * 78.30036 * 24 19 18 45 45 H 1.08997 * 110.02258 * 5.64031 * 25 12 11 46 46 H 1.08999 * 110.01743 * 127.02896 * 25 12 11 47 47 H 1.09003 * 110.28196 * 265.96173 * 26 25 12 48 48 H 1.08994 * 110.62141 * 143.49215 * 26 25 12 49 49 H 1.08995 * 110.66578 * 203.89014 * 27 26 25 50 50 H 1.09003 * 110.66791 * 80.75240 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4041 2.1004 -1.3959 5 1 1.4975 2.6238 0.7914 6 1 3.5913 1.4150 0.6044 7 6 2.0102 -1.2022 0.0005 8 1 3.0781 -1.2092 -0.1609 9 7 1.3410 -2.3791 0.2056 10 6 -0.0538 -2.5035 0.6653 11 6 -0.1287 -3.9004 1.3297 12 6 0.7934 -4.7381 0.4088 13 7 0.0792 -5.2798 -0.7500 14 6 -0.9562 -6.1236 -0.5694 15 8 -1.2971 -6.4356 0.5548 16 6 -1.6766 -6.6706 -1.7389 17 6 -1.2880 -6.3153 -3.0318 18 6 -1.9656 -6.8297 -4.1159 19 6 -3.0306 -7.6983 -3.9303 20 6 -3.4205 -8.0543 -2.6514 21 6 -2.7479 -7.5443 -1.5566 22 6 -4.5971 -9.0045 -2.7212 23 6 -5.1587 -8.8478 -4.1501 24 6 -3.9191 -8.3864 -4.9451 25 6 1.4694 -5.8377 1.2410 26 6 2.9832 -5.4848 1.2711 27 6 3.0257 -3.9557 1.0361 28 6 1.8960 -3.7249 0.0036 29 1 2.2295 -3.8755 -1.0232 30 1 -0.4850 0.8400 0.0004 31 1 -0.7383 -2.4487 -0.1811 32 1 -0.2847 -1.7248 1.3921 33 1 -1.1484 -4.2851 1.3149 34 1 0.2603 -3.8696 2.3474 35 1 0.3513 -5.0311 -1.6472 36 1 -0.4589 -5.6398 -3.1818 37 1 -1.6680 -6.5514 -5.1160 38 1 -3.0526 -7.8229 -0.5588 39 1 -4.2657 -10.0296 -2.5560 40 1 -5.3517 -8.7268 -1.9853 41 1 -5.9409 -8.0891 -4.1775 42 1 -5.5307 -9.7993 -4.5301 43 1 -4.2110 -7.6867 -5.7283 44 1 -3.4055 -9.2455 -5.3767 45 1 1.0706 -5.8364 2.2554 46 1 1.3064 -6.8103 0.7769 47 1 3.5092 -6.0083 0.4727 48 1 3.4164 -5.7342 2.2397 49 1 3.9897 -3.6563 0.6251 50 1 2.8170 -3.4184 1.9613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992503257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:04 Heat of formation + Delta-G solvation = 8.809245 kcal Electronic energy + Delta-G solvation = -30014.277688 eV Core-core repulsion = 26199.006347 eV Total energy + Delta-G solvation = -3815.271341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.62148 -39.78067 -38.02713 -35.60500 -34.21235 -33.39023 -31.59562 -31.47178 -30.06646 -29.01244 -27.60251 -26.69665 -26.01284 -23.82035 -23.33200 -22.20960 -21.05489 -20.81726 -20.00311 -19.33526 -18.77859 -17.37142 -16.95287 -16.05924 -15.92120 -15.38277 -15.06497 -14.94272 -14.82312 -14.65139 -14.04277 -13.68406 -13.50887 -13.36842 -13.15498 -13.06842 -12.85215 -12.65724 -12.18386 -12.01382 -11.83255 -11.76585 -11.67865 -11.46757 -11.18925 -11.11367 -11.03596 -10.93668 -10.75521 -10.66843 -10.52862 -10.17498 -10.14847 -9.86844 -9.77948 -9.64002 -9.40649 -8.95388 -8.73068 -8.59270 -8.46259 -6.80285 -5.74057 -3.07782 0.81854 1.25998 2.97262 3.38162 3.39940 3.45418 3.47084 3.86212 4.15683 4.29007 4.48590 4.70427 4.72912 4.82952 4.89678 5.00362 5.04447 5.15572 5.22501 5.33735 5.37946 5.41919 5.50823 5.51678 5.52911 5.64504 5.66697 5.78454 5.84006 5.86097 5.86770 5.96554 5.99611 6.07566 6.14648 6.20564 6.27145 6.30244 6.36072 6.42134 6.43609 6.53478 6.60038 6.76530 6.79176 6.79670 6.99747 7.14797 7.54265 7.63229 7.79478 7.85848 8.25976 8.51749 9.19138 9.81573 10.49225 11.38290 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.002904 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.306472 B = 9638.630909 C =10682.182184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.075 0.925 9 N -0.594 5.594 10 C 0.175 3.825 11 C -0.144 4.144 12 C 0.162 3.838 13 N -0.699 5.699 14 C 0.558 3.442 15 O -0.536 6.536 16 C -0.127 4.127 17 C -0.084 4.084 18 C -0.115 4.115 19 C -0.079 4.079 20 C -0.110 4.110 21 C -0.049 4.049 22 C -0.081 4.081 23 C -0.121 4.121 24 C -0.084 4.084 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.128 4.128 28 C 0.161 3.839 29 H 0.047 0.953 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.059 0.941 49 H 0.058 0.942 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -18.663 -7.781 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.050 3.950 11 C -0.184 4.184 12 C 0.075 3.925 13 N -0.349 5.349 14 C 0.345 3.655 15 O -0.414 6.414 16 C -0.130 4.130 17 C -0.103 4.103 18 C -0.133 4.133 19 C -0.079 4.079 20 C -0.110 4.110 21 C -0.068 4.068 22 C -0.118 4.118 23 C -0.158 4.158 24 C -0.121 4.121 25 C -0.150 4.150 26 C -0.162 4.162 27 C -0.168 4.168 28 C 0.053 3.947 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.151 0.849 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.690 -18.609 -6.979 20.674 hybrid contribution 0.617 1.188 -0.563 1.453 sum -5.073 -17.421 -7.543 19.650 Atomic orbital electron populations 1.69977 1.04967 1.25147 1.56058 1.24832 0.95554 0.97793 1.02090 0.86170 0.78801 0.83726 0.77440 1.21711 1.21683 1.20604 1.18963 0.91086 0.82679 1.42874 0.90695 1.44504 1.10614 0.99230 1.77482 1.21396 0.85666 0.91441 0.96478 1.23338 0.99165 0.97933 0.97938 1.21646 0.92526 0.92585 0.85697 1.45825 1.32644 1.46466 1.09937 1.18136 0.79937 0.78883 0.88516 1.90738 1.66280 1.59927 1.24500 1.19919 0.98668 1.01046 0.93364 1.21256 0.99117 0.98317 0.91566 1.20544 0.95789 0.97900 0.99029 1.20807 0.95580 0.96169 0.95370 1.20522 0.98211 0.99096 0.93135 1.20678 0.93007 0.94136 0.98939 1.21038 0.94842 0.98159 0.97758 1.22295 0.97202 1.01807 0.94531 1.21102 0.94580 0.99658 0.96798 1.22492 0.94877 0.97503 1.00133 1.22567 0.95679 0.97260 1.00711 1.22906 0.99231 0.93920 1.00770 1.21786 0.91027 0.85921 0.95948 0.93589 0.93750 0.95727 0.91540 0.91149 0.91397 0.76619 0.85253 0.85664 0.84900 0.90165 0.90496 0.90839 0.90485 0.90484 0.90024 0.91174 0.92158 0.92372 0.92243 0.92277 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.74 55.49 0.60 -26.13 16 2 C -0.01 -0.16 5.39 -17.43 -0.09 -0.25 16 3 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.15 9.96 -15.06 -0.15 -6.30 16 8 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 9 N -0.59 -14.62 3.03 -161.13 -0.49 -15.10 16 10 C 0.17 4.30 5.41 -2.58 -0.01 4.29 16 11 C -0.14 -2.99 5.71 -24.73 -0.14 -3.13 16 12 C 0.16 2.94 0.74 -129.38 -0.10 2.85 16 13 N -0.70 -11.56 5.18 -46.29 -0.24 -11.80 16 14 C 0.56 9.39 6.96 -12.33 -0.09 9.31 16 15 O -0.54 -10.39 14.15 5.32 0.08 -10.32 16 16 C -0.13 -1.81 5.87 -105.01 -0.62 -2.43 16 17 C -0.08 -1.02 9.54 -39.23 -0.37 -1.40 16 18 C -0.11 -1.23 10.02 -39.58 -0.40 -1.63 16 19 C -0.08 -0.82 6.14 -104.06 -0.64 -1.46 16 20 C -0.11 -1.22 6.13 -104.23 -0.64 -1.86 16 21 C -0.05 -0.65 9.59 -39.14 -0.38 -1.02 16 22 C -0.08 -0.66 6.77 -26.85 -0.18 -0.85 16 23 C -0.12 -0.81 7.08 -25.35 -0.18 -0.99 16 24 C -0.08 -0.63 6.77 -26.84 -0.18 -0.81 16 25 C -0.11 -1.82 5.41 -25.12 -0.14 -1.96 16 26 C -0.12 -1.85 6.87 -24.49 -0.17 -2.01 16 27 C -0.13 -2.29 6.22 -24.87 -0.15 -2.44 16 28 C 0.16 3.22 3.67 -65.61 -0.24 2.98 16 29 H 0.05 0.91 7.96 -51.93 -0.41 0.50 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.02 0.66 8.06 -51.93 -0.42 0.25 16 32 H 0.07 1.82 6.99 -51.93 -0.36 1.46 16 33 H 0.07 1.49 6.53 -51.93 -0.34 1.16 16 34 H 0.07 1.38 7.63 -51.93 -0.40 0.98 16 35 H 0.40 5.91 6.52 -40.82 -0.27 5.65 16 36 H 0.13 1.40 6.41 -52.49 -0.34 1.07 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.78 7.64 -52.49 -0.40 1.38 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 1.18 7.37 -51.93 -0.38 0.80 16 46 H 0.06 0.98 7.58 -51.93 -0.39 0.58 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.07 1.46 8.09 -51.93 -0.42 1.04 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -31.46 386.50 -12.03 -43.49 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.91 Total: 6.32 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -4.86 Total: -9.11 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.13 Total: -53.04 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.46 -12.03 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992503257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.298 kcal (2) G-P(sol) polarization free energy of solvation -31.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds