Wall clock time and date at job start Wed Apr 1 2020 00:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00027 * 2 1 4 4 H 1.48509 * 109.47050 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47231 * 120.00585 * 3 2 1 6 6 H 1.48503 * 109.47289 * 240.00637 * 3 2 1 7 7 C 1.38812 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00199 * 154.66672 * 7 2 1 9 9 N 1.36943 * 119.99797 * 334.66148 * 7 2 1 10 10 C 1.47158 * 120.70689 * 154.62663 * 9 7 2 11 11 C 1.53892 * 108.02865 * 132.76065 * 10 9 7 12 12 H 1.08996 * 112.09717 * 181.91262 * 11 10 9 13 13 C 1.54549 * 107.82943 * 306.50251 * 11 10 9 14 14 C 1.54277 * 104.84773 * 89.07222 * 13 11 10 15 15 C 1.54550 * 104.84952 * 359.97438 * 14 13 11 16 16 H 1.09003 * 112.17825 * 146.41145 * 15 14 13 17 17 C 1.47163 * 120.70927 * 334.35104 * 9 7 2 18 18 N 1.48304 * 104.35835 * 24.70374 * 15 14 13 19 19 C 1.34772 * 128.08069 * 139.08182 * 18 15 14 20 20 O 1.21558 * 120.00103 * 176.10938 * 19 18 15 21 21 C 1.47842 * 119.99946 * 356.10165 * 19 18 15 22 22 C 1.39608 * 120.26696 * 25.99580 * 21 19 18 23 23 C 1.37633 * 119.61665 * 180.11804 * 22 21 19 24 24 C 1.39074 * 120.75586 * 0.02562 * 23 22 21 25 25 C 1.37825 * 119.90309 * 359.74688 * 24 23 22 26 26 C 1.38647 * 119.82729 * 0.08330 * 25 24 23 27 27 C 1.50667 * 122.55150 * 180.47785 * 25 24 23 28 28 C 1.52721 * 110.59177 * 342.09862 * 27 25 24 29 29 C 1.53319 * 108.37236 * 51.17285 * 28 27 25 30 30 C 1.50685 * 117.60432 * 179.38231 * 24 23 22 31 31 H 0.97000 * 119.99708 * 174.16499 * 1 2 3 32 32 H 1.09005 * 109.75317 * 252.39054 * 10 9 7 33 33 H 1.09005 * 109.75219 * 13.07582 * 10 9 7 34 34 H 1.08998 * 110.36313 * 207.91512 * 13 11 10 35 35 H 1.09002 * 110.36516 * 330.23020 * 13 11 10 36 36 H 1.09000 * 110.36765 * 241.15278 * 14 13 11 37 37 H 1.09003 * 110.46018 * 118.88982 * 14 13 11 38 38 H 1.08999 * 109.75080 * 346.87767 * 17 9 7 39 39 H 1.09002 * 109.74663 * 107.60709 * 17 9 7 40 40 H 1.07996 * 120.19361 * 0.10029 * 22 21 19 41 41 H 1.08001 * 119.61905 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.78830 * 180.02562 * 26 25 24 43 43 H 1.09005 * 109.24637 * 102.38277 * 27 25 24 44 44 H 1.08999 * 109.25297 * 221.84732 * 27 25 24 45 45 H 1.08996 * 109.68338 * 170.89193 * 28 27 25 46 46 H 1.08994 * 109.68310 * 291.45475 * 28 27 25 47 47 H 1.09000 * 109.68445 * 49.81167 * 29 28 27 48 48 H 1.09000 * 109.68041 * 170.32251 * 29 28 27 49 49 H 1.08995 * 109.24893 * 282.80221 * 30 24 23 50 50 H 1.09007 * 109.24983 * 42.22191 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0124 -1.2470 -0.4008 9 7 1.4243 -2.3313 0.5065 10 6 1.8443 -3.6657 0.0498 11 6 2.0567 -4.5491 1.2918 12 1 2.4031 -5.5488 1.0296 13 6 3.0305 -3.8100 2.2374 14 6 2.1263 -2.9385 3.1335 15 6 0.6883 -3.2296 2.6476 16 1 -0.0363 -3.1923 3.4610 17 6 0.3655 -2.2363 1.5241 18 7 0.7732 -4.5771 2.0339 19 6 -0.1099 -5.5908 2.1288 20 8 0.0734 -6.6170 1.5036 21 6 -1.3014 -5.4547 2.9934 22 6 -1.8252 -4.1918 3.2760 23 6 -2.9334 -4.0805 4.0845 24 6 -3.5371 -5.2115 4.6235 25 6 -3.0275 -6.4613 4.3444 26 6 -1.9135 -6.5854 3.5284 27 6 -3.6399 -7.7263 4.8875 28 6 -4.5490 -7.4162 6.0748 29 6 -5.5235 -6.3074 5.6607 30 6 -4.7379 -5.0065 5.5104 31 1 -0.4850 -0.8357 -0.0854 32 1 1.0695 -4.0993 -0.5825 33 1 2.7758 -3.5869 -0.5108 34 1 3.5879 -4.5252 2.8423 35 1 3.7135 -3.1833 1.6640 36 1 2.3648 -1.8832 3.0008 37 1 2.2385 -3.2233 4.1796 38 1 0.3317 -1.2241 1.9271 39 1 -0.5969 -2.4885 1.0789 40 1 -1.3633 -3.3073 2.8628 41 1 -3.3389 -3.1036 4.3028 42 1 -1.5150 -7.5652 3.3098 43 1 -4.2244 -8.2079 4.1034 44 1 -2.8463 -8.4004 5.2095 45 1 -5.1069 -8.3102 6.3534 46 1 -3.9478 -7.0799 6.9195 47 1 -5.9911 -6.5656 4.7106 48 1 -6.2900 -6.1875 6.4264 49 1 -4.4058 -4.6717 6.4931 50 1 -5.3833 -4.2457 5.0713 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018240088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:27 Heat of formation + Delta-G solvation = 7.126913 kcal Electronic energy + Delta-G solvation = -30709.828936 eV Core-core repulsion = 26894.484643 eV Total energy + Delta-G solvation = -3815.344293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.14481 -40.86322 -39.34718 -36.93687 -36.29591 -33.60726 -33.51812 -32.47252 -32.30479 -30.97794 -29.91003 -28.06170 -25.66443 -25.50138 -24.66773 -23.83382 -23.33823 -22.43812 -21.65292 -20.67116 -20.15116 -19.14854 -18.03098 -17.37028 -17.01215 -16.70939 -16.55455 -15.92119 -15.69091 -15.64374 -15.51526 -15.28890 -15.15144 -14.75205 -14.69847 -14.51283 -14.22770 -13.92526 -13.78682 -13.67974 -13.46936 -13.33152 -13.06021 -12.90703 -12.57399 -12.51032 -12.43743 -12.24399 -12.09609 -11.87693 -11.73856 -11.68450 -11.49981 -11.44239 -11.32096 -11.30292 -10.94390 -10.53593 -10.04338 -9.80711 -9.59316 -8.94108 -8.24305 -5.39552 -0.18600 0.28729 1.62280 1.65062 1.69056 1.79869 1.87353 2.65381 2.68009 3.16951 3.26687 3.36937 3.62586 3.68580 3.72139 3.80811 3.87684 3.99278 3.99943 4.06165 4.13540 4.17392 4.19649 4.26729 4.39007 4.41736 4.49069 4.61823 4.63464 4.65460 4.69703 4.80156 4.85977 4.87848 4.91161 4.95788 4.98392 5.01339 5.02327 5.08980 5.12853 5.16188 5.20251 5.25396 5.34083 5.41871 5.47613 5.48261 5.59086 5.80304 5.91036 6.34664 6.47700 6.95749 6.96346 7.72639 8.16435 8.99664 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016479 B = 0.003242 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.714428 B = 8633.439506 C = 9697.134742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.072 4.072 3 Si 1.115 2.885 4 H -0.295 1.295 5 H -0.273 1.273 6 H -0.282 1.282 7 C -0.348 4.348 8 H 0.058 0.942 9 N -0.603 5.603 10 C 0.139 3.861 11 C 0.117 3.883 12 H 0.097 0.903 13 C -0.101 4.101 14 C -0.109 4.109 15 C 0.097 3.903 16 H 0.126 0.874 17 C 0.160 3.840 18 N -0.601 5.601 19 C 0.568 3.432 20 O -0.589 6.589 21 C -0.147 4.147 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.052 4.052 25 C -0.087 4.087 26 C -0.074 4.074 27 C -0.081 4.081 28 C -0.116 4.116 29 C -0.120 4.120 30 C -0.083 4.083 31 H 0.251 0.749 32 H -0.010 1.010 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.067 0.933 39 H -0.009 1.009 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.125 0.875 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -11.111 16.835 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.268 4.268 3 Si 0.939 3.061 4 H -0.222 1.222 5 H -0.199 1.199 6 H -0.208 1.208 7 C -0.478 4.478 8 H 0.076 0.924 9 N -0.327 5.327 10 C 0.013 3.987 11 C 0.013 3.987 12 H 0.115 0.885 13 C -0.139 4.139 14 C -0.147 4.147 15 C -0.006 4.006 16 H 0.143 0.857 17 C 0.033 3.967 18 N -0.332 5.332 19 C 0.360 3.640 20 O -0.472 6.472 21 C -0.150 4.150 22 C -0.133 4.133 23 C -0.144 4.144 24 C -0.052 4.052 25 C -0.087 4.087 26 C -0.093 4.093 27 C -0.118 4.118 28 C -0.153 4.153 29 C -0.157 4.157 30 C -0.120 4.120 31 H 0.061 0.939 32 H 0.008 0.992 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.009 0.991 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.143 0.857 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.112 0.888 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.086 -10.061 16.554 20.627 hybrid contribution 0.284 -1.542 -1.296 2.035 sum -6.802 -11.603 15.257 20.339 Atomic orbital electron populations 1.70931 1.07580 1.29145 1.50735 1.27133 0.96470 1.04595 0.98639 0.82854 0.73786 0.72064 0.77360 1.22175 1.19862 1.20785 1.20210 0.97574 0.89001 1.40972 0.92415 1.44269 1.43720 1.01199 1.43560 1.21505 0.97629 0.85818 0.93766 1.22839 0.83659 0.99112 0.93073 0.88477 1.22249 0.96690 0.98097 0.96905 1.22329 0.92309 1.00834 0.99221 1.23463 1.00233 0.80768 0.96170 0.85686 1.21187 0.89274 0.97474 0.88719 1.49137 1.21098 1.13420 1.49503 1.18426 0.82704 0.81611 0.81271 1.90688 1.77375 1.30490 1.48625 1.19701 0.97261 0.95711 1.02313 1.21888 0.97045 0.96396 0.97968 1.21426 0.95304 1.00016 0.97632 1.20230 0.96867 0.91644 0.96470 1.19873 0.94943 0.96153 0.97711 1.21273 0.95130 0.97332 0.95521 1.20558 0.99532 0.92920 0.98746 1.21557 0.97336 0.99678 0.96774 1.21578 0.97897 0.93895 1.02345 1.20639 0.93009 0.99542 0.98818 0.93935 0.99200 0.91043 0.89830 0.90568 0.90942 0.89537 0.91472 0.99085 0.84901 0.83365 0.85722 0.90098 0.90109 0.89622 0.91359 0.92060 0.89328 0.88829 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.74 12.47 21.65 0.27 -55.47 16 2 C -0.07 -3.94 4.70 84.86 0.40 -3.54 16 3 Si 1.11 48.79 29.99 68.60 2.06 50.85 16 4 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.35 -18.59 9.54 84.03 0.80 -17.79 16 8 H 0.06 3.06 7.93 -2.91 -0.02 3.04 16 9 N -0.60 -29.45 2.17 -696.12 -1.51 -30.96 16 10 C 0.14 6.15 6.02 86.56 0.52 6.67 16 11 C 0.12 4.38 4.11 45.48 0.19 4.57 16 12 H 0.10 3.53 7.95 -2.39 -0.02 3.51 16 13 C -0.10 -3.22 6.18 31.55 0.20 -3.03 16 14 C -0.11 -3.49 6.18 31.55 0.20 -3.30 16 15 C 0.10 3.49 2.98 45.30 0.13 3.63 16 16 H 0.13 3.96 4.84 -2.39 -0.01 3.95 16 17 C 0.16 7.28 3.60 86.39 0.31 7.59 16 18 N -0.60 -22.93 2.74 -760.76 -2.09 -25.01 16 19 C 0.57 22.68 7.72 86.79 0.67 23.35 16 20 O -0.59 -26.77 16.95 -3.90 -0.07 -26.83 16 21 C -0.15 -4.96 5.77 -20.16 -0.12 -5.07 16 22 C -0.11 -3.50 8.03 22.46 0.18 -3.32 16 23 C -0.13 -3.05 9.59 22.33 0.21 -2.83 16 24 C -0.05 -1.10 5.75 -19.77 -0.11 -1.21 16 25 C -0.09 -1.98 5.73 -19.87 -0.11 -2.09 16 26 C -0.07 -2.14 9.15 22.62 0.21 -1.93 16 27 C -0.08 -1.30 5.66 29.75 0.17 -1.14 16 28 C -0.12 -1.34 5.98 30.61 0.18 -1.16 16 29 C -0.12 -1.36 5.97 30.61 0.18 -1.17 16 30 C -0.08 -1.16 5.66 29.75 0.17 -0.99 16 31 H 0.25 15.40 6.50 -92.71 -0.60 14.80 16 32 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 33 H 0.07 3.01 7.96 -2.38 -0.02 2.99 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.57 7.84 -2.39 -0.02 2.55 16 36 H 0.07 2.59 7.83 -2.39 -0.02 2.57 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 3.33 6.56 -2.39 -0.02 3.31 16 39 H -0.01 -0.44 7.10 -2.39 -0.02 -0.45 16 40 H 0.13 4.40 3.86 -2.91 -0.01 4.38 16 41 H 0.15 2.89 8.05 -2.91 -0.02 2.87 16 42 H 0.12 3.64 7.84 -2.91 -0.02 3.61 16 43 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 44 H 0.08 1.21 8.12 -2.39 -0.02 1.20 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 47 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 48 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.09 1.08 8.12 -2.38 -0.02 1.06 16 Total: -1.00 -69.77 377.68 4.14 -65.62 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 1.11 Total: 24.57 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 4.37 Total: -2.76 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.33 Total: -111.45 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.07 Total: -26.83 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.06 Total: 50.85 kcal Total: -69.77 4.14 -65.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018240088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.748 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds