Wall clock time and date at job start Wed Apr 1 2020 00:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99918 * 2 1 4 4 H 1.48505 * 109.47049 * 269.99772 * 3 2 1 5 5 H 1.48499 * 109.47109 * 29.99589 * 3 2 1 6 6 H 1.48498 * 109.47231 * 149.99864 * 3 2 1 7 7 C 1.38812 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99417 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00147 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99734 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47317 * 324.99666 * 10 9 7 12 12 C 1.53002 * 109.47534 * 84.99912 * 10 9 7 13 13 C 1.52995 * 109.47488 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46947 * 299.99562 * 13 12 10 15 15 H 1.08997 * 109.47749 * 300.00241 * 14 13 12 16 16 N 1.46502 * 109.47307 * 180.02562 * 14 13 12 17 17 C 1.34771 * 119.99626 * 85.00095 * 16 14 13 18 18 O 1.21277 * 120.00800 * 0.02562 * 17 16 14 19 19 C 1.50713 * 119.99494 * 180.02562 * 17 16 14 20 20 H 1.08990 * 115.53859 * 325.59132 * 19 17 16 21 21 C 1.53046 * 117.47730 * 179.97438 * 19 17 16 22 22 H 1.08999 * 119.99186 * 141.05087 * 21 19 17 23 23 C 1.53439 * 118.58168 * 343.84657 * 21 19 17 24 24 C 1.50967 * 107.03392 * 297.01775 * 23 21 19 25 25 C 1.38790 * 129.71937 * 179.65562 * 24 23 21 26 26 C 1.38015 * 120.30986 * 180.30449 * 25 24 23 27 27 C 1.38248 * 119.87671 * 359.54396 * 26 25 24 28 28 C 1.38013 * 119.88734 * 0.40899 * 27 26 25 29 29 C 1.37806 * 110.46559 * 359.68256 * 24 23 21 30 30 C 1.50952 * 110.47736 * 359.94122 * 29 24 23 31 31 H 1.08998 * 117.43397 * 220.72216 * 30 29 24 32 32 C 1.53010 * 109.46890 * 60.00318 * 14 13 12 33 33 C 1.52999 * 109.47111 * 204.99868 * 10 9 7 34 34 H 0.97002 * 120.00252 * 0.02562 * 1 2 3 35 35 H 0.97000 * 120.00522 * 359.97438 * 9 7 2 36 36 H 1.08997 * 109.46772 * 300.00518 * 12 10 9 37 37 H 1.09005 * 109.47114 * 59.99508 * 12 10 9 38 38 H 1.09001 * 109.46969 * 180.02562 * 13 12 10 39 39 H 1.08995 * 109.47375 * 59.99747 * 13 12 10 40 40 H 0.97004 * 120.00143 * 265.00551 * 16 14 13 41 41 H 1.08999 * 109.92459 * 177.67141 * 23 21 19 42 42 H 1.09000 * 109.92035 * 56.36395 * 23 21 19 43 43 H 1.08002 * 119.84173 * 0.02562 * 25 24 23 44 44 H 1.07998 * 120.06480 * 179.71234 * 26 25 24 45 45 H 1.08000 * 120.05555 * 180.19638 * 27 26 25 46 46 H 1.08003 * 119.84305 * 179.79593 * 28 27 26 47 47 H 1.08997 * 109.46987 * 59.99457 * 32 14 13 48 48 H 1.08999 * 109.46689 * 179.97438 * 32 14 13 49 49 H 1.09000 * 109.47466 * 59.99971 * 33 10 9 50 50 H 1.08997 * 109.47381 * 300.00045 * 33 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5646 -3.2064 0.5901 12 6 4.2588 -2.9751 -1.4360 13 6 5.0232 -4.3004 -1.4359 14 6 6.4102 -4.0891 -0.8256 15 1 6.9582 -3.3536 -1.4145 16 7 7.1425 -5.3580 -0.8260 17 6 7.8255 -5.7414 -1.9228 18 8 7.8344 -5.0358 -2.9092 19 6 8.5783 -7.0470 -1.9234 20 1 9.0245 -7.3326 -0.9709 21 6 9.3336 -7.4260 -3.1994 22 1 10.3105 -7.9049 -3.1325 23 6 8.9942 -6.6866 -4.5004 24 6 7.5530 -6.9992 -4.8237 25 6 6.7698 -6.5720 -5.8868 26 6 5.4548 -6.9780 -5.9905 27 6 4.9173 -7.8218 -5.0363 28 6 5.6951 -8.2483 -3.9789 29 6 7.0163 -7.8373 -3.8705 30 6 8.0463 -8.1680 -2.8177 31 1 8.0809 -9.1950 -2.4541 32 6 6.2636 -3.5848 0.6116 33 6 5.4991 -2.2589 0.6112 34 1 -0.4850 0.8400 -0.0004 35 1 3.8647 -0.3620 0.0007 36 1 3.2707 -3.1259 -1.8707 37 1 4.8064 -2.2394 -2.0251 38 1 5.1281 -4.6594 -2.4598 39 1 4.4753 -5.0359 -0.8469 40 1 7.1357 -5.9222 -0.0370 41 1 9.6398 -7.0366 -5.3058 42 1 9.1190 -5.6129 -4.3607 43 1 7.1900 -5.9152 -6.6341 44 1 4.8475 -6.6395 -6.8169 45 1 3.8896 -8.1438 -5.1162 46 1 5.2735 -8.9048 -3.2321 47 1 5.7156 -4.3203 1.2005 48 1 7.2517 -3.4347 1.0465 49 1 5.3947 -1.8997 1.6350 50 1 6.0467 -1.5233 0.0222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034748933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:06 Heat of formation + Delta-G solvation = 25.045828 kcal Electronic energy + Delta-G solvation = -29767.094361 eV Core-core repulsion = 25952.527091 eV Total energy + Delta-G solvation = -3814.567270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48033 -39.45954 -38.07322 -36.76556 -34.88732 -33.06797 -31.89058 -31.00695 -30.59365 -30.44190 -28.12706 -27.60089 -24.82302 -23.27038 -22.61717 -22.33786 -21.39223 -20.75702 -20.54639 -20.08899 -19.38658 -17.59539 -17.28933 -16.34674 -16.14592 -15.74869 -15.23442 -14.98589 -14.84584 -14.58350 -14.25428 -13.92076 -13.76200 -13.52922 -13.41544 -13.17951 -12.89398 -12.79392 -12.70949 -12.41424 -12.11971 -12.03098 -11.92608 -11.68600 -11.40127 -11.15823 -10.94569 -10.87337 -10.86054 -10.81340 -10.61232 -10.53963 -10.19720 -10.14659 -9.79937 -9.56809 -9.49116 -8.97399 -8.85305 -8.79194 -8.53398 -7.23129 -5.74261 -3.09265 1.21686 1.35957 2.43184 3.04554 3.34847 3.39703 3.43077 3.47450 3.72941 4.10201 4.25108 4.49680 4.61847 4.67830 4.74387 4.88020 4.89217 4.94396 4.99084 5.01783 5.15388 5.16968 5.31215 5.41030 5.49433 5.53608 5.56172 5.58122 5.62490 5.65257 5.67845 5.79088 5.82645 5.85456 5.96731 6.00104 6.10962 6.15745 6.20867 6.27010 6.37031 6.40556 6.45939 6.49497 6.56420 6.62533 6.68192 6.92910 6.93470 7.07986 7.49776 8.02800 8.24634 8.45199 9.24132 9.96914 10.17111 11.44280 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015410 B = 0.002712 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.582056 B =10320.144641 C =11250.640824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 H 0.054 0.946 12 C -0.131 4.131 13 C -0.121 4.121 14 C 0.147 3.853 15 H 0.085 0.915 16 N -0.723 5.723 17 C 0.540 3.460 18 O -0.526 6.526 19 C -0.158 4.158 20 H 0.132 0.868 21 C -0.122 4.122 22 H 0.129 0.871 23 C -0.062 4.062 24 C -0.056 4.056 25 C -0.110 4.110 26 C -0.111 4.111 27 C -0.128 4.128 28 C -0.096 4.096 29 C -0.086 4.086 30 C -0.096 4.096 31 H 0.124 0.876 32 C -0.118 4.118 33 C -0.123 4.123 34 H 0.259 0.741 35 H 0.360 0.640 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.396 0.604 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.147 -19.956 -5.678 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.392 5.392 10 C 0.073 3.927 11 H 0.072 0.928 12 C -0.172 4.172 13 C -0.160 4.160 14 C 0.043 3.957 15 H 0.103 0.897 16 N -0.373 5.373 17 C 0.326 3.674 18 O -0.402 6.402 19 C -0.179 4.179 20 H 0.150 0.850 21 C -0.141 4.141 22 H 0.147 0.853 23 C -0.098 4.098 24 C -0.056 4.056 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.146 4.146 28 C -0.114 4.114 29 C -0.086 4.086 30 C -0.114 4.114 31 H 0.142 0.858 32 C -0.157 4.157 33 C -0.162 4.162 34 H 0.069 0.931 35 H 0.193 0.807 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.230 0.770 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.135 0.865 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.892 -19.483 -6.387 29.272 hybrid contribution 0.349 0.900 0.494 1.084 sum 21.240 -18.583 -5.893 28.831 Atomic orbital electron populations 1.69701 1.05108 1.25761 1.57797 1.24670 0.95223 0.97185 1.02184 0.86552 0.79196 0.85029 0.77781 1.21126 1.21821 1.20315 1.19082 0.80645 0.94654 1.42664 0.89252 1.42791 1.03988 1.02078 1.90302 1.20210 0.90199 0.89062 0.93242 0.92772 1.22171 0.99976 0.94843 1.00220 1.21855 0.94623 0.98935 1.00616 1.21070 0.92723 0.84701 0.97169 0.89655 1.46103 1.51658 1.23349 1.16176 1.19596 0.78725 0.86119 0.82964 1.90665 1.62190 1.54656 1.32684 1.22398 1.03670 0.94793 0.97030 0.85044 1.22901 0.96332 1.01849 0.92974 0.85336 1.20444 0.91992 1.03157 0.94204 1.20313 0.96138 0.95029 0.94152 1.20603 0.93875 1.00334 0.97998 1.21037 0.94972 0.97687 0.99195 1.20980 0.99713 0.98946 0.94962 1.20620 0.92541 1.00156 0.98117 1.19536 0.93792 0.99505 0.95806 1.21424 0.94899 0.96393 0.98711 0.85803 1.21743 1.00404 0.98385 0.95154 1.21795 0.96897 0.95866 1.01677 0.93118 0.80720 0.91419 0.92709 0.92281 0.92316 0.77010 0.90560 0.87217 0.86382 0.85944 0.85930 0.86490 0.91424 0.91876 0.91337 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.67 13.97 55.49 0.78 -28.89 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.40 27.74 -169.99 -4.71 17.68 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -6.82 10.41 -15.06 -0.16 -6.98 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.82 4.92 -53.43 -0.26 -18.08 16 10 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -2.38 5.50 -26.73 -0.15 -2.52 16 13 C -0.12 -1.83 5.49 -26.73 -0.15 -1.97 16 14 C 0.15 1.91 2.45 -67.92 -0.17 1.74 16 15 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 16 N -0.72 -7.68 5.08 -53.80 -0.27 -7.95 16 17 C 0.54 6.39 6.88 -10.98 -0.08 6.32 16 18 O -0.53 -8.04 12.21 5.56 0.07 -7.97 16 19 C -0.16 -1.33 6.18 -91.77 -0.57 -1.90 16 20 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.12 -1.00 7.06 -90.16 -0.64 -1.64 16 22 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 23 C -0.06 -0.63 5.77 -27.53 -0.16 -0.79 16 24 C -0.06 -0.67 4.87 -104.45 -0.51 -1.18 16 25 C -0.11 -1.30 10.04 -39.46 -0.40 -1.70 16 26 C -0.11 -1.25 10.05 -39.66 -0.40 -1.65 16 27 C -0.13 -1.42 10.04 -39.66 -0.40 -1.81 16 28 C -0.10 -1.07 10.04 -39.46 -0.40 -1.47 16 29 C -0.09 -0.97 5.27 -104.45 -0.55 -1.53 16 30 C -0.10 -0.83 6.85 -91.46 -0.63 -1.45 16 31 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 32 C -0.12 -1.40 5.40 -26.70 -0.14 -1.55 16 33 C -0.12 -1.88 5.39 -26.70 -0.14 -2.02 16 34 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 35 H 0.36 8.45 5.66 -40.82 -0.23 8.22 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 3.09 8.60 -40.82 -0.35 2.73 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 1.34 6.21 -51.93 -0.32 1.01 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -34.23 393.05 -12.46 -46.69 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.07 Total: 11.43 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -5.90 Total: -18.82 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.24 Total: -54.93 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.23 -12.46 -46.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034748933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.737 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds