Wall clock time and date at job start Wed Apr 1 2020 00:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99711 * 2 1 4 4 H 1.48493 * 109.47152 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47011 * 120.00187 * 3 2 1 6 6 H 1.48499 * 109.46874 * 239.99513 * 3 2 1 7 7 C 1.38813 * 120.00128 * 180.27347 * 2 1 3 8 8 H 1.07998 * 120.00157 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99598 * 359.97438 * 7 2 1 10 10 C 1.48149 * 126.40313 * 359.69527 * 9 7 2 11 11 C 1.55341 * 107.02075 * 174.88289 * 10 9 7 12 12 C 1.53700 * 101.90379 * 337.90356 * 11 10 9 13 13 H 1.08999 * 111.10534 * 281.20114 * 12 11 10 14 14 C 1.51978 * 115.61614 * 153.50959 * 12 11 10 15 15 C 1.53882 * 107.29085 * 184.24582 * 14 12 11 16 16 N 1.46602 * 110.70938 * 51.81463 * 15 14 12 17 17 C 1.34771 * 119.75322 * 132.27973 * 16 15 14 18 18 O 1.21557 * 120.00113 * 354.12335 * 17 16 15 19 19 C 1.47848 * 119.99917 * 174.12989 * 17 16 15 20 20 C 1.39585 * 120.18690 * 326.58435 * 19 17 16 21 21 C 1.37805 * 119.79080 * 179.97438 * 20 19 17 22 22 C 1.38675 * 120.40920 * 359.97438 * 21 20 19 23 23 C 1.38373 * 120.07198 * 0.02562 * 22 21 20 24 24 C 1.38236 * 120.00358 * 359.74064 * 23 22 21 25 25 C 1.51396 * 109.74078 * 179.97438 * 23 22 21 26 26 C 1.54334 * 105.17317 * 17.22567 * 25 23 22 27 27 C 1.51420 * 130.22293 * 179.97438 * 22 21 20 28 28 C 1.46264 * 120.09445 * 312.15684 * 16 15 14 29 29 C 1.45514 * 126.39218 * 179.97438 * 9 7 2 30 30 H 1.08997 * 109.56571 * 93.35836 * 29 9 7 31 31 H 0.96993 * 119.99843 * 359.72928 * 1 2 3 32 32 H 1.09001 * 109.91562 * 294.36112 * 10 9 7 33 33 H 1.08996 * 109.92058 * 55.65837 * 10 9 7 34 34 H 1.09002 * 111.09809 * 219.66377 * 11 10 9 35 35 H 1.09005 * 110.77367 * 95.99571 * 11 10 9 36 36 H 1.08994 * 109.89307 * 303.69418 * 14 12 11 37 37 H 1.09000 * 109.88825 * 64.80570 * 14 12 11 38 38 H 1.08994 * 109.23363 * 172.12942 * 15 14 12 39 39 H 1.09000 * 109.22949 * 291.54084 * 15 14 12 40 40 H 1.08003 * 120.10643 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.79940 * 179.97438 * 21 20 19 42 42 H 1.07994 * 119.95479 * 180.25785 * 24 23 22 43 43 H 1.09006 * 110.30482 * 136.15406 * 25 23 22 44 44 H 1.09003 * 110.30443 * 258.30032 * 25 23 22 45 45 H 1.09003 * 110.81730 * 91.81436 * 26 25 23 46 46 H 1.08997 * 110.81803 * 215.35440 * 26 25 23 47 47 H 1.09003 * 110.29934 * 281.72602 * 27 22 21 48 48 H 1.08999 * 110.29637 * 43.87189 * 27 22 21 49 49 H 1.09000 * 109.62886 * 292.34839 * 28 16 15 50 50 H 1.09001 * 109.72410 * 171.27864 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2021 -0.0053 9 7 1.3256 -2.3880 -0.0109 10 6 -0.1467 -2.5532 -0.0047 11 6 -0.4343 -4.0731 -0.1467 12 6 0.8678 -4.5840 -0.7838 13 1 0.8905 -4.3736 -1.8531 14 6 1.2077 -6.0393 -0.5073 15 6 2.5847 -6.3149 -1.1366 16 7 3.5649 -5.3178 -0.6960 17 6 4.7738 -5.7180 -0.2545 18 8 5.0106 -6.9028 -0.1214 19 6 5.8118 -4.7159 0.0681 20 6 5.8899 -3.5271 -0.6593 21 6 6.8604 -2.5984 -0.3513 22 6 7.7595 -2.8375 0.6770 23 6 7.6872 -4.0141 1.4017 24 6 6.7147 -4.9504 1.1045 25 6 8.7717 -4.0314 2.4580 26 6 9.2304 -2.5638 2.5902 27 6 8.8979 -1.9859 1.1982 28 6 3.2326 -3.8941 -0.7383 29 6 1.9083 -3.7214 -0.0177 30 1 2.0001 -4.0848 1.0058 31 1 -0.4849 0.8400 0.0040 32 1 -0.5581 -2.1813 0.9336 33 1 -0.5844 -2.0141 -0.8448 34 1 -1.2858 -4.2517 -0.8033 35 1 -0.5954 -4.5291 0.8302 36 1 1.2500 -6.2124 0.5679 37 1 0.4570 -6.6877 -0.9592 38 1 2.9234 -7.3072 -0.8389 39 1 2.4974 -6.2762 -2.2224 40 1 5.1919 -3.3356 -1.4609 41 1 6.9211 -1.6788 -0.9143 42 1 6.6564 -5.8665 1.6733 43 1 8.3703 -4.3891 3.4063 44 1 9.6024 -4.6599 2.1370 45 1 8.6657 -2.0500 3.3682 46 1 10.3011 -2.5087 2.7866 47 1 9.7624 -2.0659 0.5391 48 1 8.5830 -0.9461 1.2857 49 1 3.1389 -3.5705 -1.7749 50 1 4.0102 -3.3197 -0.2348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042349727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:23 Heat of formation + Delta-G solvation = 11.253220 kcal Electronic energy + Delta-G solvation = -30581.137012 eV Core-core repulsion = 26765.971649 eV Total energy + Delta-G solvation = -3815.165363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02183 -40.75741 -39.64940 -36.86911 -36.60216 -34.72700 -33.11874 -32.50839 -31.04029 -30.49865 -29.69328 -28.38657 -26.57048 -25.63345 -24.43984 -23.16845 -22.63971 -21.80385 -21.70039 -21.25618 -20.25565 -18.65334 -18.14027 -17.31084 -16.89434 -16.81328 -16.60121 -16.36651 -15.89208 -15.74822 -15.69995 -15.41570 -14.91054 -14.70520 -14.42714 -14.21819 -13.90872 -13.75860 -13.73330 -13.71246 -13.29930 -13.16200 -13.06623 -12.82469 -12.69399 -12.54301 -12.46333 -12.13290 -12.04817 -12.04237 -11.93451 -11.72525 -11.68173 -11.53397 -11.35458 -11.26358 -10.79237 -10.68346 -9.92839 -9.75245 -9.44380 -8.89234 -7.81919 -5.17532 -0.14380 0.32838 1.47536 1.50095 1.55936 1.59777 1.89385 2.52030 2.71027 3.23319 3.37066 3.44323 3.54971 3.60444 3.83020 3.89851 3.95001 3.98937 4.11723 4.18923 4.20667 4.25175 4.28219 4.33494 4.38385 4.47510 4.59801 4.63501 4.67496 4.69562 4.83394 4.85325 4.86470 4.90224 4.94236 4.99407 5.07341 5.09683 5.12356 5.15745 5.18428 5.27997 5.29829 5.38639 5.44145 5.49180 5.55723 5.57793 5.67162 5.79212 5.88748 6.18729 6.24347 6.97449 7.09734 7.78865 8.47184 9.29271 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008707 B = 0.004741 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.902637 B = 5904.367080 C = 8610.881098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.062 4.062 3 Si 0.969 3.031 4 H -0.298 1.298 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.233 4.233 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.099 4.099 13 H 0.079 0.921 14 C -0.106 4.106 15 C 0.107 3.893 16 N -0.594 5.594 17 C 0.560 3.440 18 O -0.575 6.575 19 C -0.153 4.153 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.079 4.079 23 C -0.117 4.117 24 C -0.066 4.066 25 C -0.080 4.080 26 C -0.116 4.116 27 C -0.085 4.085 28 C 0.108 3.892 29 C 0.147 3.853 30 H 0.006 0.994 31 H 0.245 0.755 32 H -0.001 1.001 33 H 0.025 0.975 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.084 0.916 49 H 0.077 0.923 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.655 -8.533 0.079 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.256 4.256 3 Si 0.798 3.202 4 H -0.225 1.225 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.361 4.361 8 H 0.103 0.897 9 N -0.334 5.334 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.118 4.118 13 H 0.097 0.903 14 C -0.145 4.145 15 C -0.014 4.014 16 N -0.325 5.325 17 C 0.350 3.650 18 O -0.456 6.456 19 C -0.156 4.156 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.079 4.079 23 C -0.117 4.117 24 C -0.085 4.085 25 C -0.117 4.117 26 C -0.153 4.153 27 C -0.122 4.122 28 C -0.015 4.015 29 C 0.039 3.961 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.017 0.983 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.162 0.838 42 H 0.142 0.858 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.103 0.897 49 H 0.095 0.905 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.707 -8.921 0.133 17.202 hybrid contribution -0.394 1.177 0.082 1.244 sum 14.313 -7.744 0.215 16.275 Atomic orbital electron populations 1.70152 1.06295 1.25195 1.58345 1.25563 0.96439 1.00752 1.02798 0.85286 0.77298 0.79276 0.78371 1.22475 1.20606 1.19687 1.19325 0.90884 0.83247 1.42692 0.89661 1.44396 1.02285 1.00234 1.86498 1.21338 0.83267 0.91966 0.97641 1.22605 0.97581 0.95359 1.00626 1.22200 0.95148 0.94911 0.99580 0.90264 1.21731 0.96157 0.95389 1.01202 1.21786 0.87919 0.92079 0.99624 1.47772 1.13775 1.07822 1.63149 1.18591 0.82431 0.87966 0.75966 1.90694 1.81057 1.18571 1.55297 1.19728 0.98738 0.96195 1.00903 1.21570 0.97879 0.92080 0.99559 1.20869 0.94674 1.00175 0.98273 1.21279 0.96314 0.96060 0.94267 1.20894 0.97099 0.94354 0.99310 1.20671 0.93124 0.98989 0.95735 1.21152 0.95327 0.98897 0.96336 1.22341 1.02998 0.93806 0.96142 1.21234 0.95101 0.98761 0.97097 1.21886 0.98307 0.80093 1.01229 1.21090 0.93423 0.86221 0.95369 0.97644 0.94549 0.98296 0.95633 0.89717 0.91660 0.92208 0.87368 0.89251 0.89858 0.84336 0.83817 0.85803 0.90143 0.88708 0.90987 0.87905 0.88186 0.89715 0.90524 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.11 10.44 21.65 0.23 -55.88 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 3 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 4 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.23 -12.41 9.88 84.03 0.83 -11.58 16 8 H 0.09 4.29 7.43 -2.91 -0.02 4.27 16 9 N -0.61 -30.11 3.35 -669.32 -2.24 -32.35 16 10 C 0.18 8.84 5.46 86.87 0.47 9.31 16 11 C -0.12 -4.37 6.56 31.63 0.21 -4.17 16 12 C -0.10 -3.22 2.58 -10.08 -0.03 -3.25 16 13 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16 14 C -0.11 -2.75 5.76 30.55 0.18 -2.57 16 15 C 0.11 2.88 6.34 86.66 0.55 3.43 16 16 N -0.59 -18.91 2.98 -826.23 -2.46 -21.37 16 17 C 0.56 19.26 7.38 86.79 0.64 19.90 16 18 O -0.57 -22.14 16.13 -3.90 -0.06 -22.20 16 19 C -0.15 -4.84 5.31 -20.12 -0.11 -4.94 16 20 C -0.09 -2.68 7.36 22.49 0.17 -2.52 16 21 C -0.12 -3.12 10.02 22.27 0.22 -2.90 16 22 C -0.08 -1.84 6.14 -19.50 -0.12 -1.96 16 23 C -0.12 -2.84 6.12 -19.61 -0.12 -2.96 16 24 C -0.07 -1.93 9.60 22.56 0.22 -1.71 16 25 C -0.08 -1.35 6.77 30.52 0.21 -1.14 16 26 C -0.12 -1.57 7.08 31.50 0.22 -1.35 16 27 C -0.09 -1.37 6.77 30.53 0.21 -1.16 16 28 C 0.11 3.74 3.85 86.01 0.33 4.08 16 29 C 0.15 5.86 2.80 45.58 0.13 5.99 16 30 H 0.01 0.27 7.94 -2.39 -0.02 0.25 16 31 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.00 -0.07 7.79 -2.39 -0.02 -0.09 16 33 H 0.03 1.37 7.19 -2.39 -0.02 1.36 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.06 2.19 8.13 -2.38 -0.02 2.17 16 36 H 0.06 1.66 7.99 -2.39 -0.02 1.64 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 2.45 6.92 -2.39 -0.02 2.44 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.14 3.91 5.79 -2.91 -0.02 3.89 16 41 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 42 H 0.12 3.56 7.98 -2.91 -0.02 3.53 16 43 H 0.08 1.28 8.14 -2.38 -0.02 1.27 16 44 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.08 2.60 7.96 -2.39 -0.02 2.58 16 50 H 0.09 3.34 4.19 -2.39 -0.01 3.33 16 Total: -1.00 -68.98 382.14 3.09 -65.89 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.93 Total: 22.07 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 4.67 Total: -2.49 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.48 Total: -109.61 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.98 3.09 -65.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042349727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.140 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds