Wall clock time and date at job start Wed Apr 1 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99840 * 2 1 4 4 H 1.48503 * 109.46763 * 239.99876 * 3 2 1 5 5 H 1.48494 * 109.47171 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47281 * 120.00164 * 3 2 1 7 7 C 1.38809 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00175 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.46785 * 125.33896 * 179.97438 * 9 7 2 11 11 C 1.53961 * 106.62415 * 161.50906 * 10 9 7 12 12 H 1.09001 * 113.01657 * 265.71881 * 11 10 9 13 13 C 1.54099 * 109.44585 * 138.18086 * 11 10 9 14 14 N 1.46744 * 106.63249 * 278.63552 * 13 11 10 15 15 C 1.34778 * 125.32878 * 161.58408 * 14 13 11 16 16 O 1.21548 * 119.99924 * 185.19799 * 15 14 13 17 17 C 1.47843 * 119.99918 * 5.19983 * 15 14 13 18 18 C 1.39609 * 120.27030 * 24.73767 * 17 15 14 19 19 C 1.37627 * 119.61902 * 180.23842 * 18 17 15 20 20 C 1.39079 * 120.75898 * 359.78548 * 19 18 17 21 21 C 1.37833 * 119.89538 * 0.03312 * 20 19 18 22 22 C 1.38646 * 119.82867 * 0.14257 * 21 20 19 23 23 C 1.50668 * 122.55483 * 180.24115 * 21 20 19 24 24 C 1.52725 * 110.58313 * 342.28808 * 23 21 20 25 25 C 1.53325 * 108.35215 * 51.16802 * 24 23 21 26 26 C 1.50683 * 117.60480 * 179.76444 * 20 19 18 27 27 C 1.46636 * 109.34105 * 341.32180 * 14 13 11 28 28 C 1.53698 * 108.01236 * 1.06293 * 27 14 13 29 29 H 1.09002 * 112.55460 * 254.09054 * 28 27 14 30 30 C 1.48236 * 125.14549 * 359.97438 * 9 7 2 31 31 H 0.97000 * 120.00184 * 359.97438 * 1 2 3 32 32 H 1.09001 * 110.02220 * 42.21768 * 10 9 7 33 33 H 1.08999 * 110.02531 * 280.79827 * 10 9 7 34 34 H 1.08998 * 110.14072 * 159.30067 * 13 11 10 35 35 H 1.08991 * 109.95897 * 37.87434 * 13 11 10 36 36 H 1.08002 * 120.18801 * 0.10840 * 18 17 15 37 37 H 1.07997 * 119.62060 * 180.02562 * 19 18 17 38 38 H 1.08004 * 119.78406 * 179.83763 * 22 21 20 39 39 H 1.09001 * 109.25678 * 102.57665 * 23 21 20 40 40 H 1.09002 * 109.24943 * 222.00924 * 23 21 20 41 41 H 1.09005 * 109.68660 * 170.88410 * 24 23 21 42 42 H 1.08998 * 109.69016 * 291.44806 * 24 23 21 43 43 H 1.08995 * 109.68070 * 49.75248 * 25 24 23 44 44 H 1.09010 * 109.68093 * 170.26526 * 25 24 23 45 45 H 1.08996 * 109.24530 * 282.96833 * 26 20 19 46 46 H 1.08996 * 109.24815 * 42.38374 * 26 20 19 47 47 H 1.09008 * 109.76465 * 120.70644 * 27 14 13 48 48 H 1.09004 * 109.76198 * 241.42234 * 27 14 13 49 49 H 1.08997 * 110.30015 * 61.05092 * 30 9 7 50 50 H 1.08997 * 110.03607 * 299.78246 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.9381 -3.7220 0.0005 11 6 0.8504 -4.7061 0.4684 12 1 0.8861 -4.9028 1.5399 13 6 0.9087 -5.9826 -0.3928 14 7 0.1879 -5.6841 -1.6356 15 6 0.2949 -6.3798 -2.7850 16 8 -0.2757 -5.9917 -3.7856 17 6 1.1063 -7.6149 -2.8287 18 6 1.3328 -8.3496 -1.6634 19 6 2.0943 -9.4948 -1.7186 20 6 2.6369 -9.9308 -2.9226 21 6 2.4136 -9.2118 -4.0772 22 6 1.6511 -8.0548 -4.0325 23 6 2.9677 -9.6319 -5.4138 24 6 4.1060 -10.6338 -5.2323 25 6 3.6178 -11.7572 -4.3100 26 6 3.4635 -11.1905 -2.9004 27 6 -0.6718 -4.5142 -1.4294 28 6 -0.4701 -4.0246 0.0135 29 1 -1.3140 -4.2676 0.6592 30 6 -0.1508 -2.5210 0.0005 31 1 -0.4850 0.8400 0.0004 32 1 2.7831 -3.7447 0.6887 33 1 2.2682 -3.9811 -1.0054 34 1 0.4266 -6.8095 0.1286 35 1 1.9456 -6.2348 -0.6144 36 1 0.9147 -8.0201 -0.7237 37 1 2.2692 -10.0634 -0.8172 38 1 1.4788 -7.4905 -4.9371 39 1 2.1745 -10.0918 -6.0033 40 1 3.3424 -8.7537 -5.9396 41 1 4.3872 -11.0493 -6.2000 42 1 4.9650 -10.1363 -4.7822 43 1 2.6564 -12.1302 -4.6629 44 1 4.3460 -12.5684 -4.3024 45 1 4.4493 -10.9662 -2.4933 46 1 2.9738 -11.9305 -2.2674 47 1 -0.3945 -3.7252 -2.1285 48 1 -1.7148 -4.7919 -1.5820 49 1 -0.5718 -2.0621 -0.8940 50 1 -0.5683 -2.0479 0.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049201009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:02 Heat of formation + Delta-G solvation = 14.869740 kcal Electronic energy + Delta-G solvation = -29701.475399 eV Core-core repulsion = 25886.466860 eV Total energy + Delta-G solvation = -3815.008539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75843 -39.73495 -38.08805 -36.09858 -34.95346 -32.80200 -32.30235 -31.02851 -29.86157 -29.60846 -29.09263 -25.85889 -25.59844 -24.13178 -23.56910 -22.54994 -22.30014 -20.33540 -20.09351 -19.38426 -19.19907 -17.26441 -16.63894 -16.28309 -15.90533 -15.78084 -15.40753 -14.80930 -14.68120 -14.44091 -14.16665 -14.11503 -13.82640 -13.54069 -13.27954 -13.18805 -12.99796 -12.72631 -12.71247 -12.43975 -12.01901 -11.82403 -11.76940 -11.67058 -11.54273 -11.30662 -11.23111 -10.91082 -10.81575 -10.78419 -10.66000 -10.36924 -10.14059 -10.00715 -9.90019 -9.71572 -9.63350 -8.94363 -8.73640 -8.61952 -8.34764 -6.83955 -5.71958 -3.05079 0.81446 1.21326 2.85674 3.15389 3.41193 3.45557 3.46703 3.72560 4.31005 4.34814 4.48374 4.53492 4.56194 4.70471 4.78641 4.79573 4.87119 4.99715 5.07352 5.19699 5.21455 5.24724 5.27868 5.41943 5.48862 5.51486 5.55012 5.58354 5.62433 5.66631 5.69779 5.72341 5.76162 5.82310 5.90601 5.93226 5.97466 6.10440 6.20921 6.25190 6.27165 6.33762 6.41260 6.55946 6.61982 6.68426 6.78055 6.84056 7.52195 7.55433 7.70918 7.79630 8.23821 8.31237 9.20202 9.81828 10.46097 11.40086 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.002465 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.437497 B =11358.029796 C =11636.424229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.146 3.854 11 C -0.110 4.110 12 H 0.100 0.900 13 C 0.107 3.893 14 N -0.602 5.602 15 C 0.569 3.431 16 O -0.541 6.541 17 C -0.124 4.124 18 C -0.101 4.101 19 C -0.129 4.129 20 C -0.058 4.058 21 C -0.086 4.086 22 C -0.062 4.062 23 C -0.081 4.081 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.083 4.083 27 C 0.119 3.881 28 C -0.124 4.124 29 H 0.088 0.912 30 C 0.188 3.812 31 H 0.253 0.747 32 H 0.035 0.965 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 -25.010 -3.774 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.020 3.980 11 C -0.130 4.130 12 H 0.118 0.882 13 C -0.016 4.016 14 N -0.334 5.334 15 C 0.359 3.641 16 O -0.419 6.419 17 C -0.127 4.127 18 C -0.119 4.119 19 C -0.147 4.147 20 C -0.058 4.058 21 C -0.086 4.086 22 C -0.081 4.081 23 C -0.118 4.118 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.120 4.120 27 C -0.003 4.003 28 C -0.144 4.144 29 H 0.106 0.894 30 C 0.064 3.936 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.459 -24.577 -4.383 25.360 hybrid contribution 0.373 1.002 0.126 1.077 sum 4.832 -23.575 -4.256 24.439 Atomic orbital electron populations 1.69923 1.04858 1.25219 1.57097 1.24786 0.95738 0.97671 1.02210 0.86186 0.78452 0.83173 0.77874 1.21206 1.21583 1.21179 1.19002 0.90398 0.82431 1.43847 0.90539 1.44588 1.01361 0.99862 1.87303 1.21210 0.93744 0.85827 0.97222 1.23000 0.97216 0.93682 0.99120 0.88194 1.22291 0.96771 0.97536 0.84971 1.48113 1.43950 1.30420 1.10965 1.17945 0.81188 0.83121 0.81880 1.90768 1.48115 1.69766 1.33271 1.19806 1.01641 0.96515 0.94767 1.21814 0.97128 0.94685 0.98261 1.21088 0.98994 0.97091 0.97495 1.19810 0.97240 0.96158 0.92622 1.19544 0.98981 0.94966 0.95140 1.21246 0.94485 0.95096 0.97276 1.20481 0.98041 0.99628 0.93624 1.21553 0.97979 0.96329 0.99894 1.21551 1.01687 0.97776 0.94781 1.20519 0.99419 0.94065 0.97950 1.22012 0.93362 0.87209 0.97745 1.23153 0.97025 1.00266 0.93915 0.89352 1.21321 0.84320 0.86389 1.01599 0.93637 0.94691 0.96560 0.91534 0.90476 0.84177 0.85648 0.85082 0.90523 0.90531 0.91371 0.91494 0.91567 0.91415 0.90358 0.90608 0.90460 0.92094 0.93048 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.25 55.49 0.57 -26.41 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.37 10.25 -15.06 -0.15 -6.53 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.26 3.42 -170.57 -0.58 -15.85 16 10 C 0.15 2.97 6.49 -3.39 -0.02 2.95 16 11 C -0.11 -1.76 4.17 -88.27 -0.37 -2.13 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.11 1.45 4.24 -3.34 -0.01 1.43 16 14 N -0.60 -9.93 3.30 -173.39 -0.57 -10.50 16 15 C 0.57 9.90 7.63 -12.33 -0.09 9.80 16 16 O -0.54 -11.26 16.92 5.32 0.09 -11.17 16 17 C -0.12 -1.76 5.67 -105.08 -0.60 -2.35 16 18 C -0.10 -1.15 8.18 -39.29 -0.32 -1.47 16 19 C -0.13 -1.24 9.59 -39.49 -0.38 -1.62 16 20 C -0.06 -0.56 5.75 -104.47 -0.60 -1.16 16 21 C -0.09 -0.92 5.73 -104.64 -0.60 -1.52 16 22 C -0.06 -0.81 9.15 -39.05 -0.36 -1.17 16 23 C -0.08 -0.67 5.66 -28.04 -0.16 -0.83 16 24 C -0.12 -0.80 5.98 -26.70 -0.16 -0.96 16 25 C -0.12 -0.74 5.97 -26.71 -0.16 -0.90 16 26 C -0.08 -0.57 5.66 -28.04 -0.16 -0.73 16 27 C 0.12 2.14 6.21 -3.60 -0.02 2.12 16 28 C -0.12 -2.20 3.97 -88.60 -0.35 -2.55 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 C 0.19 4.43 4.84 -2.71 -0.01 4.42 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 34 H 0.07 0.71 6.39 -51.93 -0.33 0.38 16 35 H 0.08 0.99 6.96 -51.93 -0.36 0.63 16 36 H 0.14 1.41 4.44 -52.49 -0.23 1.17 16 37 H 0.13 0.90 8.05 -52.49 -0.42 0.47 16 38 H 0.13 1.76 7.83 -52.48 -0.41 1.35 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 43 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 44 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 47 H 0.08 1.65 7.30 -51.92 -0.38 1.27 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 1.36 6.76 -51.93 -0.35 1.01 16 50 H 0.05 1.30 7.41 -51.93 -0.38 0.92 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -32.97 381.98 -12.28 -45.25 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.89 Total: -0.77 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -4.63 Total: -3.52 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.59 Total: -52.76 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.97 -12.28 -45.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049201009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.118 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds