Wall clock time and date at job start Wed Apr 1 2020 00:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99980 * 2 1 4 4 H 1.48499 * 109.47327 * 270.00159 * 3 2 1 5 5 H 1.48506 * 109.46758 * 30.00112 * 3 2 1 6 6 H 1.48494 * 109.46785 * 149.99757 * 3 2 1 7 7 C 1.38803 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00255 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.46889 * 125.58495 * 359.97438 * 9 7 2 11 11 C 1.54050 * 107.70923 * 177.04694 * 10 9 7 12 12 C 1.54068 * 103.74367 * 342.86390 * 11 10 9 13 13 H 1.08996 * 109.16352 * 273.54220 * 12 11 10 14 14 C 1.47658 * 125.58305 * 179.97438 * 9 7 2 15 15 H 1.08993 * 110.57100 * 322.57743 * 14 9 7 16 16 C 1.52936 * 107.98443 * 83.59494 * 14 9 7 17 17 C 1.52947 * 109.78726 * 171.84098 * 16 14 9 18 18 C 1.53049 * 108.49526 * 294.00502 * 17 16 14 19 19 N 1.44175 * 111.78042 * 153.25410 * 12 11 10 20 20 C 1.34782 * 117.74863 * 93.57745 * 19 12 11 21 21 O 1.21552 * 120.00129 * 187.61135 * 20 19 12 22 22 C 1.47844 * 119.99760 * 7.61211 * 20 19 12 23 23 C 1.39585 * 120.18867 * 328.32056 * 22 20 19 24 24 C 1.37813 * 119.78741 * 179.78175 * 23 22 20 25 25 C 1.38668 * 120.40513 * 0.45592 * 24 23 22 26 26 C 1.38369 * 120.08317 * 359.80592 * 25 24 23 27 27 C 1.38233 * 119.99582 * 359.97438 * 26 25 24 28 28 C 1.51396 * 109.74194 * 179.97438 * 26 25 24 29 29 C 1.54332 * 105.17420 * 342.78397 * 28 26 25 30 30 C 1.51422 * 130.20921 * 179.75495 * 25 24 23 31 31 H 0.97003 * 119.99788 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.80757 * 296.59760 * 10 9 7 33 33 H 1.09001 * 109.80754 * 57.48835 * 10 9 7 34 34 H 1.08996 * 110.56973 * 101.43460 * 11 10 9 35 35 H 1.09004 * 110.56742 * 224.29931 * 11 10 9 36 36 H 1.08997 * 109.41871 * 51.74900 * 16 14 9 37 37 H 1.08997 * 109.41504 * 291.94049 * 16 14 9 38 38 H 1.09008 * 109.62737 * 174.30778 * 17 16 14 39 39 H 1.08994 * 109.79782 * 53.81036 * 17 16 14 40 40 H 1.08999 * 109.45333 * 173.82488 * 18 17 16 41 41 H 1.08992 * 109.46208 * 293.79832 * 18 17 16 42 42 H 1.08001 * 120.10893 * 0.02562 * 23 22 20 43 43 H 1.07990 * 119.79294 * 180.27699 * 24 23 22 44 44 H 1.08002 * 119.95005 * 180.02562 * 27 26 25 45 45 H 1.09003 * 110.29798 * 101.70963 * 28 26 25 46 46 H 1.09003 * 110.30591 * 223.85552 * 28 26 25 47 47 H 1.08996 * 110.81816 * 268.17324 * 29 28 26 48 48 H 1.09007 * 110.98727 * 144.71566 * 29 28 26 49 49 H 1.08999 * 110.30824 * 316.20033 * 30 25 24 50 50 H 1.09005 * 110.30158 * 78.25442 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1364 -2.5310 0.0005 11 6 -0.4601 -4.0351 -0.0755 12 6 0.8585 -4.6695 -0.5575 13 1 0.8902 -4.6450 -1.6468 14 6 1.9359 -3.7325 -0.0016 15 1 2.8317 -3.7459 -0.6224 16 6 2.2800 -4.0960 1.4435 17 6 2.7268 -5.5569 1.5176 18 6 1.5340 -6.4480 1.1634 19 7 0.9843 -6.0382 -0.1221 20 6 0.5649 -7.0051 -0.9622 21 8 0.5221 -8.1602 -0.5865 22 6 0.1569 -6.6605 -2.3409 23 6 -0.4272 -5.4219 -2.6112 24 6 -0.8002 -5.1076 -3.9001 25 6 -0.6076 -6.0179 -4.9283 26 6 -0.0341 -7.2495 -4.6658 27 6 0.3480 -7.5735 -3.3774 28 6 0.0639 -8.0513 -5.9463 29 6 -0.9030 -7.3601 -6.9307 30 6 -0.9335 -5.9103 -6.4031 31 1 -0.4850 0.8401 0.0004 32 1 -0.5480 -2.1104 0.9180 33 1 -0.5583 -2.0180 -0.8637 34 1 -0.7326 -4.4184 0.9078 35 1 -1.2588 -4.2191 -0.7941 36 1 1.4010 -3.9537 2.0721 37 1 3.0854 -3.4523 1.7971 38 1 3.0671 -5.7850 2.5278 39 1 3.5373 -5.7314 0.8100 40 1 1.8613 -7.4860 1.1041 41 1 0.7680 -6.3522 1.9328 42 1 -0.5826 -4.7105 -1.8136 43 1 -1.2479 -4.1476 -4.1101 44 1 0.7958 -8.5348 -3.1735 45 1 1.0824 -8.0225 -6.3334 46 1 -0.2463 -9.0817 -5.7721 47 1 -1.8941 -7.8110 -6.8812 48 1 -0.5142 -7.3941 -7.9485 49 1 -1.9246 -5.4780 -6.5409 50 1 -0.1835 -5.3055 -6.9130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049896539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:43 Heat of formation + Delta-G solvation = 53.022095 kcal Electronic energy + Delta-G solvation = -30833.377434 eV Core-core repulsion = 27020.023306 eV Total energy + Delta-G solvation = -3813.354128 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.17456 -39.63741 -38.08177 -35.85051 -35.07257 -33.15111 -32.16511 -31.48931 -29.41557 -29.24660 -28.21513 -27.46085 -24.89116 -24.63139 -23.11660 -21.86078 -21.67198 -20.92818 -20.60277 -19.82991 -18.25975 -17.18530 -16.94003 -16.16407 -16.00358 -15.68264 -15.24925 -14.94268 -14.71715 -14.30392 -14.19287 -13.79628 -13.55900 -13.36052 -13.23941 -13.04330 -12.86572 -12.56887 -12.47579 -12.20318 -12.04072 -11.97568 -11.76998 -11.36303 -11.15362 -11.09654 -11.02067 -10.93040 -10.83050 -10.71571 -10.58009 -10.34327 -10.14538 -10.07413 -9.91540 -9.69658 -9.52439 -8.80846 -8.66440 -8.41271 -8.32437 -6.94013 -5.78664 -3.13172 0.97264 1.40190 2.87524 3.17212 3.35927 3.41754 3.43039 3.81115 4.26649 4.41259 4.41646 4.62644 4.80274 4.96131 5.01283 5.05432 5.14517 5.19249 5.25203 5.26655 5.37142 5.43071 5.48155 5.51862 5.53026 5.56016 5.62466 5.62841 5.70336 5.76057 5.84323 5.93401 5.96634 6.01763 6.09727 6.10288 6.14309 6.17984 6.28590 6.36640 6.40720 6.44073 6.49660 6.59204 6.72654 6.87966 6.95573 6.97787 7.47832 7.48062 7.56423 7.73652 8.16407 8.31398 9.13683 9.73233 10.37126 11.32436 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011146 B = 0.003880 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.470201 B = 7213.885993 C = 9079.984619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.179 3.821 11 C -0.171 4.171 12 C 0.103 3.897 13 H 0.111 0.889 14 C 0.162 3.838 15 H 0.057 0.943 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.117 3.883 19 N -0.580 5.580 20 C 0.555 3.445 21 O -0.547 6.547 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.076 4.076 26 C -0.115 4.115 27 C -0.053 4.053 28 C -0.079 4.079 29 C -0.120 4.120 30 C -0.086 4.086 31 H 0.253 0.747 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.180 0.820 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -13.571 -8.731 16.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.210 4.210 12 C -0.002 4.002 13 H 0.128 0.872 14 C 0.053 3.947 15 H 0.075 0.925 16 C -0.172 4.172 17 C -0.170 4.170 18 C -0.005 4.005 19 N -0.310 5.310 20 C 0.345 3.655 21 O -0.427 6.427 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.132 4.132 25 C -0.077 4.077 26 C -0.115 4.115 27 C -0.072 4.072 28 C -0.116 4.116 29 C -0.158 4.158 30 C -0.123 4.123 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.196 0.804 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.006 -13.880 -8.487 16.300 hybrid contribution 0.435 1.060 0.181 1.160 sum -0.571 -12.820 -8.306 15.286 Atomic orbital electron populations 1.69941 1.04852 1.25147 1.56853 1.24774 0.95701 0.97605 1.02014 0.86131 0.78617 0.83476 0.77594 1.21566 1.21685 1.20703 1.19011 0.90460 0.82048 1.44057 0.90359 1.44491 1.01309 0.99267 1.86867 1.21079 0.84586 0.87202 1.01696 1.23378 0.96276 1.00414 1.00939 1.22106 0.97078 0.80099 1.00891 0.87165 1.20902 0.93881 0.85885 0.94001 0.92487 1.22129 1.01573 0.93634 0.99821 1.21858 0.97151 0.96577 1.01443 1.21321 0.95766 0.99299 0.84122 1.46946 1.60821 1.06216 1.16977 1.18441 0.77202 0.84942 0.84965 1.90721 1.54790 1.19667 1.77499 1.19742 1.04599 0.95871 0.93442 1.23072 0.95441 0.96348 0.99280 1.20687 1.01106 0.99548 0.91822 1.20840 0.97164 0.94237 0.95436 1.20453 1.00564 0.96269 0.94195 1.20547 0.97609 0.98498 0.90502 1.21016 1.00254 0.98774 0.91564 1.22283 0.99854 0.94934 0.98685 1.21109 1.02332 0.97653 0.91156 0.93675 0.93837 0.92660 0.91310 0.90529 0.91940 0.91792 0.91083 0.91790 0.89662 0.92069 0.80361 0.85407 0.85590 0.90272 0.90742 0.90971 0.90552 0.90480 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.61 10.29 55.49 0.57 -25.04 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.23 -5.95 10.27 -15.06 -0.15 -6.10 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -13.94 2.94 -163.75 -0.48 -14.42 16 10 C 0.18 4.01 5.39 -3.28 -0.02 3.99 16 11 C -0.17 -3.02 5.77 -25.63 -0.15 -3.17 16 12 C 0.10 1.76 2.22 -68.49 -0.15 1.61 16 13 H 0.11 1.91 4.17 -52.06 -0.22 1.70 16 14 C 0.16 3.12 3.29 -67.21 -0.22 2.90 16 15 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.28 5.31 -26.79 -0.14 -2.42 16 17 C -0.13 -1.85 6.10 -26.73 -0.16 -2.01 16 18 C 0.12 1.73 6.20 -4.45 -0.03 1.70 16 19 N -0.58 -9.41 2.80 -168.73 -0.47 -9.88 16 20 C 0.56 9.48 7.36 -12.33 -0.09 9.39 16 21 O -0.55 -10.46 16.04 5.32 0.09 -10.37 16 22 C -0.13 -2.09 5.46 -105.02 -0.57 -2.67 16 23 C -0.12 -1.87 7.39 -39.23 -0.29 -2.16 16 24 C -0.11 -1.54 10.02 -39.58 -0.40 -1.94 16 25 C -0.08 -0.95 6.14 -104.06 -0.64 -1.59 16 26 C -0.11 -1.43 6.12 -104.23 -0.64 -2.07 16 27 C -0.05 -0.75 9.60 -39.13 -0.38 -1.12 16 28 C -0.08 -0.73 6.77 -26.84 -0.18 -0.91 16 29 C -0.12 -0.94 7.08 -25.34 -0.18 -1.12 16 30 C -0.09 -0.79 6.77 -26.84 -0.18 -0.97 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.04 1.09 7.60 -51.93 -0.39 0.70 16 33 H 0.06 1.36 7.25 -51.93 -0.38 0.98 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.22 5.91 -51.93 -0.31 0.92 16 36 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.25 7.07 -51.93 -0.37 0.88 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.18 2.79 1.62 -52.49 -0.09 2.70 16 43 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.13 1.71 7.94 -52.49 -0.42 1.30 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -29.72 377.17 -11.93 -41.65 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.62 Total: 4.99 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -4.67 Total: -8.88 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.38 Total: -49.34 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.72 -11.93 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049896539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.672 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds