Wall clock time and date at job start Wed Apr 1 2020 00:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86803 * 119.99949 * 2 1 4 4 H 1.48497 * 109.47183 * 274.98762 * 3 2 1 5 5 H 1.48505 * 109.46898 * 34.98797 * 3 2 1 6 6 H 1.48496 * 109.47288 * 154.98434 * 3 2 1 7 7 C 1.38813 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99953 * 172.12148 * 7 2 1 9 9 N 1.36936 * 119.99698 * 352.11814 * 7 2 1 10 10 C 1.48380 * 126.56355 * 3.64600 * 9 7 2 11 11 C 1.55478 * 106.97358 * 185.55470 * 10 9 7 12 12 C 1.53433 * 101.67057 * 22.60110 * 11 10 9 13 13 H 1.08995 * 111.74960 * 78.21910 * 12 11 10 14 14 C 1.45034 * 126.55882 * 183.68164 * 9 7 2 15 15 H 1.09000 * 108.70956 * 264.07892 * 14 9 7 16 16 C 1.51079 * 118.75645 * 29.02295 * 14 9 7 17 17 C 1.54989 * 106.77561 * 184.00879 * 16 14 9 18 18 C 1.52723 * 111.43028 * 302.72503 * 17 16 14 19 19 N 1.45720 * 116.37574 * 207.26192 * 12 11 10 20 20 C 1.34777 * 122.23266 * 350.09879 * 19 12 11 21 21 O 1.21555 * 119.99509 * 355.27295 * 20 19 12 22 22 C 1.47847 * 120.00357 * 175.27236 * 20 19 12 23 23 C 1.39594 * 120.18175 * 44.44760 * 22 20 19 24 24 C 1.37807 * 119.78052 * 179.97438 * 23 22 20 25 25 C 1.38663 * 120.41353 * 359.97438 * 24 23 22 26 26 C 1.38379 * 120.07684 * 0.02562 * 25 24 23 27 27 C 1.38227 * 119.99877 * 359.74595 * 26 25 24 28 28 C 1.51397 * 109.74140 * 180.02562 * 26 25 24 29 29 C 1.54341 * 105.17261 * 342.78029 * 28 26 25 30 30 C 1.51426 * 130.21686 * 180.02562 * 25 24 23 31 31 H 0.96994 * 119.99801 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.95827 * 304.93328 * 10 9 7 33 33 H 1.08995 * 109.96117 * 66.17302 * 10 9 7 34 34 H 1.08991 * 110.98686 * 264.50021 * 11 10 9 35 35 H 1.09003 * 110.98404 * 140.69359 * 11 10 9 36 36 H 1.09004 * 109.88505 * 303.05230 * 16 14 9 37 37 H 1.09005 * 109.88394 * 64.13304 * 16 14 9 38 38 H 1.08998 * 108.93433 * 182.34240 * 17 16 14 39 39 H 1.09000 * 109.29535 * 63.33817 * 17 16 14 40 40 H 1.08994 * 109.15760 * 288.35257 * 18 17 16 41 41 H 1.09005 * 109.15683 * 169.16698 * 18 17 16 42 42 H 1.07996 * 120.11280 * 359.95367 * 23 22 20 43 43 H 1.08002 * 119.79119 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.95527 * 180.25541 * 27 26 25 45 45 H 1.08994 * 110.30233 * 223.85865 * 28 26 25 46 46 H 1.08994 * 110.30632 * 101.70164 * 28 26 25 47 47 H 1.08999 * 110.81904 * 268.17861 * 29 28 26 48 48 H 1.09003 * 110.98512 * 144.71566 * 29 28 26 49 49 H 1.08995 * 110.29868 * 316.10741 * 30 25 24 50 50 H 1.08996 * 110.30216 * 78.25275 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0104 -1.2021 -0.0005 8 1 3.0827 -1.2064 -0.1287 9 7 1.3354 -2.3825 0.1616 10 6 -0.1345 -2.5521 0.2729 11 6 -0.3959 -4.0525 0.5857 12 6 0.9474 -4.4822 1.1900 13 1 1.0462 -4.1583 2.2260 14 6 1.9205 -3.7061 0.2580 15 1 1.8994 -4.1703 -0.7280 16 6 3.3115 -3.8459 0.8307 17 6 3.6968 -5.3422 0.7096 18 6 2.6878 -6.2379 1.4251 19 7 1.3028 -5.8878 1.0443 20 6 0.4272 -6.8076 0.5928 21 8 -0.7260 -6.4924 0.3730 22 6 0.8693 -8.1999 0.3649 23 6 1.6690 -8.8458 1.3093 24 6 2.0759 -10.1438 1.0887 25 6 1.6955 -10.8122 -0.0651 26 6 0.9028 -10.1773 -1.0051 27 6 0.4850 -8.8771 -0.7918 28 6 0.6303 -11.1153 -2.1618 29 6 1.6930 -12.2278 -2.0387 30 6 2.0089 -12.2194 -0.5283 31 1 -0.4849 0.8400 0.0004 32 1 -0.5205 -1.9308 1.0811 33 1 -0.6129 -2.2792 -0.6676 34 1 -0.6099 -4.6098 -0.3262 35 1 -1.2034 -4.1656 1.3091 36 1 4.0111 -3.2367 0.2583 37 1 3.3154 -3.5339 1.8752 38 1 4.6817 -5.4907 1.1522 39 1 3.7355 -5.6200 -0.3437 40 1 2.8039 -6.1181 2.5022 41 1 2.8803 -7.2773 1.1589 42 1 1.9681 -8.3300 2.2097 43 1 2.6949 -10.6436 1.8190 44 1 -0.1370 -8.3836 -1.5239 45 1 0.7418 -10.5891 -3.1097 46 1 -0.3709 -11.5379 -2.0783 47 1 2.5809 -11.9816 -2.6211 48 1 1.2862 -13.1918 -2.3443 49 1 3.0616 -12.4469 -0.3610 50 1 1.3781 -12.9388 -0.0061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049896540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:48 Heat of formation + Delta-G solvation = 30.021784 kcal Electronic energy + Delta-G solvation = -30250.339485 eV Core-core repulsion = 26435.987989 eV Total energy + Delta-G solvation = -3814.351497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.83392 -39.78156 -37.74319 -35.93652 -35.17289 -32.55858 -32.16751 -31.69164 -29.79381 -28.69983 -28.10677 -27.65919 -24.89285 -24.44542 -23.09441 -21.96513 -21.34356 -21.10371 -20.75490 -19.59549 -18.84766 -16.94509 -16.40413 -16.11900 -16.03444 -15.60027 -15.26102 -15.05905 -14.61939 -14.54315 -14.11923 -13.92920 -13.56885 -13.45810 -13.28033 -13.18432 -12.85737 -12.68412 -12.42725 -12.31129 -12.08309 -11.95797 -11.66562 -11.53352 -11.51093 -11.26268 -11.05937 -10.97723 -10.84500 -10.61519 -10.48195 -10.40415 -10.09308 -9.97791 -9.83669 -9.61424 -9.13281 -8.99112 -8.65421 -8.53420 -8.19983 -6.81050 -5.69681 -3.01750 0.84547 1.16749 2.84731 3.12745 3.41441 3.46660 3.48780 3.61429 4.09366 4.24619 4.48666 4.51803 4.66007 4.73103 4.83852 4.87287 4.97682 5.11425 5.16647 5.27778 5.34324 5.36630 5.38089 5.44637 5.46752 5.47747 5.56121 5.63548 5.66255 5.76730 5.80270 5.81290 5.87834 5.91147 6.03165 6.06746 6.12585 6.21824 6.28305 6.32187 6.37431 6.42075 6.58156 6.69620 6.74388 6.81746 6.91324 7.19066 7.60087 7.66665 7.72093 7.85826 8.26500 8.40873 9.20974 9.85281 10.54111 11.43185 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023421 B = 0.002646 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.210562 B =10580.861010 C =10933.179486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.117 3.883 13 H 0.081 0.919 14 C 0.158 3.842 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.096 3.904 19 N -0.592 5.592 20 C 0.559 3.441 21 O -0.526 6.526 22 C -0.117 4.117 23 C -0.094 4.094 24 C -0.114 4.114 25 C -0.084 4.084 26 C -0.103 4.103 27 C -0.056 4.056 28 C -0.082 4.082 29 C -0.121 4.121 30 C -0.084 4.084 31 H 0.252 0.748 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.398 -25.395 1.177 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.047 3.953 11 C -0.166 4.166 12 C 0.013 3.987 13 H 0.099 0.901 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.026 4.026 19 N -0.324 5.324 20 C 0.347 3.653 21 O -0.403 6.403 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.132 4.132 25 C -0.084 4.084 26 C -0.103 4.103 27 C -0.075 4.075 28 C -0.119 4.119 29 C -0.158 4.158 30 C -0.120 4.120 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.095 0.905 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.707 -24.968 1.035 25.632 hybrid contribution 0.533 1.038 0.101 1.171 sum 6.240 -23.929 1.136 24.756 Atomic orbital electron populations 1.69971 1.04923 1.25072 1.56477 1.24817 0.95627 0.97603 1.02244 0.86173 0.78717 0.83870 0.77458 1.21732 1.21655 1.20664 1.18970 0.91160 0.82419 1.42919 0.90362 1.44090 1.02001 1.00494 1.85189 1.21745 0.83820 0.89142 1.00566 1.22912 0.94309 0.98280 1.01063 1.22433 0.98798 0.77899 0.99590 0.90113 1.20785 0.91512 0.87705 0.95091 0.96550 1.21644 0.98246 0.93884 1.01586 1.22100 0.97878 0.95883 1.01012 1.22136 0.81094 1.00101 0.99286 1.47927 1.11710 1.08578 1.64171 1.18215 0.85241 0.84400 0.77448 1.90801 1.17825 1.80139 1.51581 1.19892 1.00660 0.94820 0.96645 1.21284 0.96281 0.94688 0.99017 1.20529 1.01374 0.94240 0.97028 1.20774 0.97210 0.96082 0.94347 1.20505 0.98532 0.93951 0.97309 1.20609 0.97600 0.92945 0.96326 1.21058 0.99732 0.94726 0.96422 1.22292 0.99045 0.98788 0.95686 1.21087 1.02027 0.93031 0.95899 0.93724 0.92693 0.94174 0.90436 0.91910 0.91497 0.91621 0.90980 0.91822 0.91453 0.89098 0.84821 0.85721 0.85355 0.90461 0.90052 0.90854 0.90468 0.90557 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.39 10.52 55.49 0.58 -26.80 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.17 29.56 -169.99 -5.03 17.15 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.29 9.90 -15.06 -0.15 -6.44 16 8 H 0.08 2.08 7.33 -52.49 -0.38 1.70 16 9 N -0.59 -15.34 3.35 -163.28 -0.55 -15.89 16 10 C 0.17 4.40 5.47 -1.69 -0.01 4.39 16 11 C -0.13 -2.76 4.94 -25.19 -0.12 -2.89 16 12 C 0.12 2.27 3.32 -66.80 -0.22 2.05 16 13 H 0.08 1.58 8.13 -51.93 -0.42 1.15 16 14 C 0.16 3.35 2.58 -68.36 -0.18 3.17 16 15 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 16 C -0.12 -1.99 5.51 -26.65 -0.15 -2.14 16 17 C -0.13 -1.69 5.95 -25.82 -0.15 -1.85 16 18 C 0.10 1.19 5.20 -3.44 -0.02 1.17 16 19 N -0.59 -9.60 2.91 -165.10 -0.48 -10.08 16 20 C 0.56 9.46 7.25 -12.33 -0.09 9.37 16 21 O -0.53 -10.69 13.95 5.32 0.07 -10.62 16 22 C -0.12 -1.59 5.28 -105.01 -0.55 -2.15 16 23 C -0.09 -1.01 7.39 -39.23 -0.29 -1.30 16 24 C -0.11 -1.05 10.02 -39.58 -0.40 -1.44 16 25 C -0.08 -0.79 6.14 -104.06 -0.64 -1.43 16 26 C -0.10 -1.09 6.12 -104.23 -0.64 -1.72 16 27 C -0.06 -0.72 9.67 -39.14 -0.38 -1.10 16 28 C -0.08 -0.65 6.77 -26.84 -0.18 -0.83 16 29 C -0.12 -0.73 7.08 -25.34 -0.18 -0.91 16 30 C -0.08 -0.55 6.77 -26.84 -0.18 -0.73 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 32 H 0.05 1.52 7.21 -51.93 -0.37 1.15 16 33 H 0.04 1.13 7.81 -51.93 -0.41 0.72 16 34 H 0.08 1.76 6.36 -51.93 -0.33 1.43 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 37 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.95 4.32 -51.93 -0.22 0.73 16 42 H 0.13 1.24 6.45 -52.49 -0.34 0.90 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -32.87 379.75 -12.22 -45.09 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.93 Total: 0.49 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.62 Total: -5.05 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.44 Total: -52.77 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.07 Total: -10.62 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.87 -12.22 -45.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049896540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.112 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds