Wall clock time and date at job start Wed Apr 1 2020 00:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99947 * 2 1 4 4 H 1.48497 * 109.46808 * 239.99721 * 3 2 1 5 5 H 1.48493 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46928 * 119.99772 * 3 2 1 7 7 C 1.38811 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99731 * 164.28847 * 7 2 1 9 9 N 1.36935 * 120.00302 * 344.28828 * 7 2 1 10 10 C 1.47237 * 121.34957 * 155.44364 * 9 7 2 11 11 C 1.52788 * 107.90166 * 115.66543 * 10 9 7 12 12 C 1.50590 * 110.86758 * 47.39909 * 11 10 9 13 13 C 1.38979 * 117.61392 * 160.47960 * 12 11 10 14 14 C 1.50696 * 119.70968 * 359.36621 * 13 12 11 15 15 N 1.46508 * 109.47306 * 79.99489 * 14 13 12 16 16 C 1.34770 * 120.00279 * 180.02562 * 15 14 13 17 17 O 1.21283 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.53002 * 119.29522 * 250.51231 * 18 16 15 20 20 C 1.52999 * 60.38035 * 248.69642 * 19 18 16 21 21 H 1.08999 * 119.29891 * 111.30818 * 20 19 18 22 22 C 1.54262 * 118.68929 * 266.65500 * 20 19 18 23 23 C 1.54889 * 104.19746 * 87.82268 * 22 20 19 24 24 C 1.54262 * 117.41333 * 46.17314 * 18 16 15 25 25 C 1.37911 * 120.58675 * 179.44803 * 13 12 11 26 26 C 1.38259 * 119.82414 * 359.93108 * 25 13 12 27 27 C 1.37954 * 119.71923 * 0.22280 * 26 25 13 28 28 C 1.37672 * 122.87188 * 340.21093 * 12 11 10 29 29 C 1.46688 * 121.34793 * 335.42127 * 9 7 2 30 30 H 0.97006 * 119.99986 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.77127 * 235.26550 * 10 9 7 32 32 H 1.09001 * 109.77648 * 356.06027 * 10 9 7 33 33 H 1.09001 * 109.19550 * 287.03845 * 11 10 9 34 34 H 1.08998 * 109.19542 * 167.76014 * 11 10 9 35 35 H 1.08999 * 109.47473 * 199.99505 * 14 13 12 36 36 H 1.09003 * 109.47039 * 319.99804 * 14 13 12 37 37 H 0.97004 * 119.99430 * 359.97438 * 15 14 13 38 38 H 1.08998 * 117.46241 * 356.29558 * 19 18 16 39 39 H 1.09005 * 117.45558 * 141.09555 * 19 18 16 40 40 H 1.08997 * 110.48814 * 206.50043 * 22 20 19 41 41 H 1.09001 * 110.48718 * 329.01345 * 22 20 19 42 42 H 1.09000 * 110.75550 * 80.37355 * 23 22 20 43 43 H 1.09003 * 110.75856 * 203.56221 * 23 22 20 44 44 H 1.08996 * 110.48322 * 235.04452 * 24 18 16 45 45 H 1.08994 * 110.48789 * 357.68971 * 24 18 16 46 46 H 1.07997 * 120.08692 * 179.97438 * 25 13 12 47 47 H 1.08004 * 120.14036 * 180.24657 * 26 25 13 48 48 H 1.08003 * 119.74843 * 179.97438 * 27 26 25 49 49 H 1.09002 * 109.43720 * 104.35365 * 29 9 7 50 50 H 1.08999 * 109.44322 * 344.46668 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0599 -1.2198 -0.2527 9 7 1.3638 -2.3658 0.3222 10 6 1.8517 -3.6703 -0.1555 11 6 2.2745 -4.4886 1.0635 12 6 1.2179 -4.4393 2.1354 13 6 1.2408 -5.4313 3.1085 14 6 2.2920 -6.5096 3.0513 15 7 3.5508 -5.9939 3.5954 16 6 4.6389 -6.7876 3.6450 17 8 4.5759 -7.9289 3.2395 18 6 5.9335 -6.2572 4.2052 19 6 7.1076 -5.9968 3.2594 20 6 7.1942 -7.1365 4.2764 21 1 7.1866 -8.1679 3.9237 22 6 7.8482 -6.8591 5.6457 23 6 6.6833 -6.3407 6.5250 24 6 5.8653 -5.4761 5.5337 25 6 0.3090 -5.4386 4.1252 26 6 -0.6567 -4.4507 4.1799 27 6 -0.6839 -3.4666 3.2136 28 6 0.2511 -3.4606 2.1872 29 6 0.1577 -2.3631 1.1570 30 1 -0.4850 0.8401 -0.0004 31 1 1.0553 -4.1887 -0.6895 32 1 2.7060 -3.5250 -0.8166 33 1 3.2065 -4.0856 1.4599 34 1 2.4321 -5.5244 0.7627 35 1 1.9657 -7.3668 3.6403 36 1 2.4422 -6.8160 2.0161 37 1 3.6011 -5.0809 3.9193 38 1 6.9783 -6.2670 2.2114 39 1 7.7150 -5.1108 3.4444 40 1 8.2625 -7.7766 6.0636 41 1 8.6244 -6.0997 5.5509 42 1 6.0837 -7.1701 6.9000 43 1 7.0610 -5.7354 7.3491 44 1 6.3197 -4.4918 5.4212 45 1 4.8325 -5.3845 5.8698 46 1 0.3340 -6.2136 4.8769 47 1 -1.3865 -4.4493 4.9761 48 1 -1.4383 -2.6949 3.2556 49 1 -0.7181 -2.5282 0.5295 50 1 0.0667 -1.4003 1.6599 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051294397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:00 Heat of formation + Delta-G solvation = 28.271473 kcal Electronic energy + Delta-G solvation = -29789.554713 eV Core-core repulsion = 25975.127317 eV Total energy + Delta-G solvation = -3814.427396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.69004 -39.64611 -38.14126 -35.99740 -34.92466 -32.76054 -31.92984 -31.72086 -30.14877 -29.17768 -28.45181 -26.02156 -25.57280 -23.37626 -23.14535 -22.20814 -22.10698 -20.61993 -20.45755 -19.28063 -18.97836 -17.35360 -16.80291 -16.10222 -15.88620 -15.57312 -15.18309 -14.86378 -14.83177 -14.38245 -14.28660 -13.65820 -13.62683 -13.44806 -13.28969 -13.21180 -12.91400 -12.67478 -12.56731 -12.36638 -11.98307 -11.96498 -11.54245 -11.42665 -11.34775 -11.26770 -11.23379 -10.96164 -10.88295 -10.73883 -10.60342 -10.41324 -10.17485 -9.94078 -9.92419 -9.77732 -9.73587 -9.01512 -8.70719 -8.28168 -7.90063 -6.81259 -5.86603 -3.26277 1.59842 1.85717 2.50170 3.19682 3.34677 3.40583 3.41426 3.44827 4.14727 4.20995 4.37684 4.43420 4.52282 4.72480 4.89607 4.95838 5.06161 5.13424 5.16201 5.24781 5.29154 5.29997 5.39310 5.41199 5.50148 5.51970 5.53134 5.56196 5.62862 5.74107 5.77224 5.82328 5.83866 5.94907 5.97543 6.09749 6.10165 6.12631 6.20626 6.41713 6.46748 6.53521 6.64027 6.81974 6.83413 6.93317 7.09063 7.18727 7.43012 7.52829 7.59321 7.72033 8.23021 8.31643 9.12410 9.74773 10.32985 11.23880 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.003243 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.806632 B = 8630.607097 C = 9955.606264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.001 3.999 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.142 3.858 11 C -0.099 4.099 12 C -0.046 4.046 13 C -0.124 4.124 14 C 0.166 3.834 15 N -0.714 5.714 16 C 0.556 3.444 17 O -0.547 6.547 18 C -0.179 4.179 19 C -0.120 4.120 20 C -0.130 4.130 21 H 0.118 0.882 22 C -0.096 4.096 23 C -0.122 4.122 24 C -0.087 4.087 25 C -0.118 4.118 26 C -0.132 4.132 27 C -0.113 4.113 28 C -0.077 4.077 29 C 0.205 3.795 30 H 0.256 0.744 31 H 0.026 0.974 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.404 0.596 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.119 0.881 49 H 0.041 0.959 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.984 -11.780 12.245 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.015 3.985 11 C -0.138 4.138 12 C -0.046 4.046 13 C -0.125 4.125 14 C 0.043 3.957 15 N -0.365 5.365 16 C 0.343 3.657 17 O -0.425 6.425 18 C -0.182 4.182 19 C -0.157 4.157 20 C -0.148 4.148 21 H 0.136 0.864 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.124 4.124 25 C -0.137 4.137 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.078 4.078 29 C 0.079 3.921 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.239 0.761 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.058 0.942 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.811 -12.437 11.919 19.349 hybrid contribution 0.126 1.317 0.196 1.337 sum 8.937 -11.120 12.116 18.716 Atomic orbital electron populations 1.69993 1.05197 1.25765 1.54349 1.25007 0.95390 0.98361 1.00925 0.86319 0.78861 0.83177 0.78141 1.20844 1.21569 1.21028 1.19131 0.92318 0.84291 1.42124 0.91322 1.43986 1.30168 1.01326 1.55982 1.20913 0.97501 0.87244 0.92820 1.21032 0.96646 0.99801 0.96280 1.19441 0.96347 0.93341 0.95510 1.19795 0.98038 0.97539 0.97099 1.20164 0.81433 0.94364 0.99733 1.46024 1.10184 1.16467 1.63803 1.19325 0.83690 0.85056 0.77673 1.90681 1.84708 1.18469 1.48620 1.22366 0.89200 1.06436 1.00233 1.23108 0.96753 0.99676 0.96156 1.23354 0.96980 0.97269 0.97209 0.86423 1.21989 0.97396 1.01331 0.92668 1.22674 0.96444 0.99286 0.97567 1.21926 1.01191 0.98183 0.91130 1.20752 0.95961 0.99100 0.97870 1.20930 0.99110 0.95601 0.99329 1.21196 0.98909 0.98571 0.94528 1.21040 0.93075 0.96948 0.96772 1.19774 0.89114 0.94295 0.88873 0.93446 0.95575 0.92130 0.91183 0.92004 0.91309 0.90508 0.76127 0.87780 0.87933 0.90963 0.91024 0.91241 0.90956 0.90437 0.90861 0.86897 0.86673 0.86252 0.94169 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.56 11.09 55.49 0.62 -24.94 16 2 C 0.00 0.04 4.99 -17.43 -0.09 -0.05 16 3 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.66 9.70 -15.06 -0.15 -6.81 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.51 2.97 -173.92 -0.52 -15.02 16 10 C 0.14 2.92 6.52 -3.75 -0.02 2.89 16 11 C -0.10 -1.73 5.24 -28.05 -0.15 -1.88 16 12 C -0.05 -0.81 5.76 -104.61 -0.60 -1.41 16 13 C -0.12 -1.86 5.26 -104.47 -0.55 -2.41 16 14 C 0.17 2.27 5.11 -5.19 -0.03 2.25 16 15 N -0.71 -9.20 5.36 -61.47 -0.33 -9.53 16 16 C 0.56 7.62 7.40 -10.99 -0.08 7.54 16 17 O -0.55 -9.33 16.79 5.55 0.09 -9.23 16 18 C -0.18 -1.94 2.67 -154.54 -0.41 -2.35 16 19 C -0.12 -1.16 9.89 -26.73 -0.26 -1.42 16 20 C -0.13 -1.27 6.53 -89.50 -0.58 -1.85 16 21 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 22 C -0.10 -0.73 6.64 -25.07 -0.17 -0.90 16 23 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 24 C -0.09 -0.77 6.21 -25.07 -0.16 -0.92 16 25 C -0.12 -1.65 9.65 -39.69 -0.38 -2.03 16 26 C -0.13 -1.90 10.05 -39.68 -0.40 -2.29 16 27 C -0.11 -1.92 9.62 -39.46 -0.38 -2.30 16 28 C -0.08 -1.50 5.82 -104.55 -0.61 -2.10 16 29 C 0.20 4.79 4.86 -5.03 -0.02 4.77 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.98 6.27 -51.93 -0.33 0.65 16 35 H 0.07 0.92 7.98 -51.93 -0.41 0.50 16 36 H 0.08 1.12 6.33 -51.93 -0.33 0.79 16 37 H 0.40 4.91 8.04 -40.82 -0.33 4.58 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.66 7.66 -51.93 -0.40 0.26 16 46 H 0.11 1.32 8.02 -52.49 -0.42 0.90 16 47 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 48 H 0.12 1.91 8.05 -52.48 -0.42 1.48 16 49 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.10 2.50 6.34 -51.93 -0.33 2.17 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -30.31 396.41 -12.41 -42.72 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.00 Total: 6.25 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -5.21 Total: -12.39 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -0.23 Total: -49.49 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.31 -12.41 -42.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051294397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.987 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds