Wall clock time and date at job start Wed Apr 1 2020 00:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48492 * 109.47209 * 266.86880 * 3 2 1 5 5 H 1.48503 * 109.47163 * 26.87235 * 3 2 1 6 6 H 1.48504 * 109.47027 * 146.87012 * 3 2 1 7 7 C 1.38814 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99974 * 342.08532 * 7 2 1 9 9 N 1.36938 * 119.99811 * 162.08947 * 7 2 1 10 10 C 1.47222 * 121.31829 * 153.24589 * 9 7 2 11 11 C 1.52781 * 107.93381 * 115.89538 * 10 9 7 12 12 C 1.50600 * 110.85556 * 47.51681 * 11 10 9 13 13 C 1.38987 * 117.62803 * 160.07722 * 12 11 10 14 14 C 1.50701 * 119.71041 * 358.80297 * 13 12 11 15 15 N 1.46497 * 109.47272 * 79.72712 * 14 13 12 16 16 C 1.34773 * 119.99766 * 179.97438 * 15 14 13 17 17 O 1.21275 * 120.00679 * 0.02562 * 16 15 14 18 18 C 1.50709 * 119.99778 * 179.97438 * 16 15 14 19 19 H 1.09002 * 110.81587 * 303.33602 * 18 16 15 20 20 C 1.55031 * 110.87338 * 66.68481 * 18 16 15 21 21 C 1.54268 * 104.27745 * 156.10148 * 20 18 16 22 22 H 1.09005 * 117.40943 * 116.45764 * 21 20 18 23 23 C 1.55460 * 118.29889 * 272.89043 * 21 20 18 24 24 C 1.52997 * 59.83789 * 93.29537 * 23 21 20 25 25 H 1.09002 * 119.29727 * 111.70633 * 24 23 21 26 26 C 1.54262 * 118.20099 * 265.84907 * 24 23 21 27 27 C 1.37907 * 120.57437 * 178.52581 * 13 12 11 28 28 C 1.38263 * 119.82897 * 0.28520 * 27 13 12 29 29 C 1.37961 * 119.71955 * 0.26611 * 28 27 13 30 30 C 1.37666 * 122.85703 * 339.65919 * 12 11 10 31 31 C 1.46895 * 121.58620 * 333.61261 * 9 7 2 32 32 H 0.97003 * 120.00363 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.76933 * 356.28416 * 10 9 7 34 34 H 1.09000 * 109.76656 * 235.50414 * 10 9 7 35 35 H 1.08992 * 109.20346 * 287.15775 * 11 10 9 36 36 H 1.09000 * 109.16108 * 167.84461 * 11 10 9 37 37 H 1.09002 * 109.47007 * 319.72360 * 14 13 12 38 38 H 1.09003 * 109.46614 * 199.73050 * 14 13 12 39 39 H 0.96998 * 120.00123 * 0.02562 * 15 14 13 40 40 H 1.08996 * 110.37132 * 37.43049 * 20 18 16 41 41 H 1.09012 * 110.52014 * 274.84101 * 20 18 16 42 42 H 1.09002 * 118.06477 * 346.16137 * 23 21 20 43 43 H 1.09003 * 117.18214 * 200.82058 * 23 21 20 44 44 H 1.08997 * 110.49009 * 207.68319 * 26 24 23 45 45 H 1.09007 * 110.48338 * 330.19314 * 26 24 23 46 46 H 1.08004 * 120.08469 * 180.31099 * 27 13 12 47 47 H 1.08003 * 120.13923 * 180.28321 * 28 27 13 48 48 H 1.07999 * 119.74613 * 179.97438 * 29 28 27 49 49 H 1.09003 * 110.00217 * 104.29629 * 31 9 7 50 50 H 1.09002 * 108.95270 * 344.37425 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5639 2.0082 -1.3979 5 1 1.4160 2.6709 0.6328 6 1 3.5131 1.4602 0.7652 7 6 2.0103 -1.2022 0.0005 8 1 1.5096 -2.1147 0.2887 9 7 3.3299 -1.2310 -0.3642 10 6 4.2417 -2.2692 0.1439 11 6 4.7114 -3.1057 -1.0452 12 6 5.1568 -2.2216 -2.1801 13 6 5.9882 -2.7799 -3.1439 14 6 6.4298 -4.2144 -3.0091 15 7 5.3554 -5.1008 -3.4631 16 6 5.5268 -6.4373 -3.4339 17 8 6.5702 -6.9062 -3.0313 18 6 4.4213 -7.3491 -3.9004 19 1 3.5032 -7.1610 -3.3438 20 6 4.1808 -7.1911 -5.4238 21 6 3.5354 -8.5267 -5.8476 22 1 2.5168 -8.4914 -6.2342 23 6 4.4702 -9.7070 -6.2345 24 6 3.9575 -9.5710 -4.7994 25 1 3.2500 -10.3051 -4.4139 26 6 4.8447 -8.8337 -3.7751 27 6 6.4080 -2.0341 -4.2253 28 6 6.0045 -0.7177 -4.3511 29 6 5.1884 -0.1576 -3.3901 30 6 4.7692 -0.9060 -2.2985 31 6 3.8996 -0.2256 -1.2711 32 1 -0.4851 0.8400 -0.0004 33 1 3.7164 -2.9044 0.8570 34 1 5.0995 -1.8018 0.6276 35 1 3.8915 -3.7387 -1.3843 36 1 5.5446 -3.7353 -0.7329 37 1 6.6597 -4.4273 -1.9651 38 1 7.3188 -4.3796 -3.6179 39 1 4.5209 -4.7258 -3.7855 40 1 5.1270 -7.0427 -5.9439 41 1 3.5024 -6.3605 -5.6194 42 1 5.5230 -9.4894 -6.4149 43 1 4.0429 -10.5002 -6.8479 44 1 4.6510 -9.2020 -2.7677 45 1 5.8984 -8.9525 -4.0278 46 1 7.0500 -2.4774 -4.9722 47 1 6.3265 -0.1304 -5.1984 48 1 4.8733 0.8707 -3.4877 49 1 4.4976 0.4897 -0.7064 50 1 3.0869 0.2987 -1.7738 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051296108.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:29 Heat of formation + Delta-G solvation = 34.122892 kcal Electronic energy + Delta-G solvation = -29596.282738 eV Core-core repulsion = 25782.109079 eV Total energy + Delta-G solvation = -3814.173659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.57853 -39.81846 -38.47951 -36.31269 -35.04964 -32.87431 -32.35522 -31.60567 -30.52796 -29.34471 -28.48868 -26.30215 -25.63302 -23.76832 -23.64909 -22.06932 -21.30926 -20.74243 -20.04393 -19.82335 -19.31473 -17.29074 -16.93431 -16.67132 -16.23316 -15.80870 -15.55669 -15.18434 -14.78029 -14.65811 -14.31276 -14.07761 -13.64794 -13.44418 -13.38544 -13.26932 -13.11683 -12.82220 -12.53662 -12.42157 -12.27864 -12.07711 -11.86568 -11.61286 -11.58186 -11.44057 -11.33126 -11.25155 -11.15399 -10.68976 -10.44537 -10.30295 -10.18973 -10.07769 -9.99590 -9.77431 -9.58150 -9.10019 -8.73800 -8.48677 -8.20987 -7.08698 -6.01240 -3.39752 1.41260 1.64443 2.55034 3.15843 3.23356 3.31777 3.41603 3.43098 3.97762 4.20200 4.33888 4.44751 4.50546 4.70280 4.81060 4.83037 4.91070 4.94881 4.97487 5.07377 5.11153 5.20412 5.23603 5.30249 5.34467 5.36482 5.44259 5.49637 5.57597 5.60539 5.67804 5.77609 5.83081 5.89718 5.90188 5.92758 5.93863 5.97338 6.09623 6.21655 6.26118 6.28404 6.34965 6.40405 6.50561 6.65176 6.69649 6.79075 7.02214 7.23009 7.45453 7.83611 8.15213 8.25473 8.82503 9.62672 10.01399 11.14815 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.002887 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.745077 B = 9695.764537 C =10602.068769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.089 0.911 9 N -0.604 5.604 10 C 0.144 3.856 11 C -0.101 4.101 12 C -0.038 4.038 13 C -0.122 4.122 14 C 0.165 3.835 15 N -0.720 5.720 16 C 0.522 3.478 17 O -0.544 6.544 18 C -0.115 4.115 19 H 0.106 0.894 20 C -0.084 4.084 21 C -0.168 4.168 22 H 0.114 0.886 23 C -0.154 4.154 24 C -0.163 4.163 25 H 0.110 0.890 26 C -0.077 4.077 27 C -0.111 4.111 28 C -0.129 4.129 29 C -0.113 4.113 30 C -0.076 4.076 31 C 0.154 3.846 32 H 0.264 0.736 33 H 0.070 0.930 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.041 0.959 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.925 -12.747 -12.343 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.384 4.384 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.018 3.982 11 C -0.140 4.140 12 C -0.039 4.039 13 C -0.123 4.123 14 C 0.042 3.958 15 N -0.371 5.371 16 C 0.308 3.692 17 O -0.422 6.422 18 C -0.136 4.136 19 H 0.124 0.876 20 C -0.122 4.122 21 C -0.186 4.186 22 H 0.132 0.868 23 C -0.191 4.191 24 C -0.181 4.181 25 H 0.128 0.872 26 C -0.115 4.115 27 C -0.129 4.129 28 C -0.147 4.147 29 C -0.132 4.132 30 C -0.077 4.077 31 C 0.028 3.972 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.239 0.761 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.058 0.942 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.486 -12.987 -11.983 21.075 hybrid contribution -0.114 1.374 -0.264 1.404 sum 11.373 -11.612 -12.246 20.351 Atomic orbital electron populations 1.69794 1.05614 1.26638 1.53124 1.25273 0.95283 0.97544 0.99480 0.87035 0.79609 0.84626 0.77400 1.21365 1.22944 1.19676 1.18885 0.83172 0.94721 1.41670 0.89312 1.44360 1.07284 1.30540 1.50560 1.20964 0.93115 0.90860 0.93294 1.21040 1.00208 0.97380 0.95333 1.19429 0.95135 0.93666 0.95648 1.19819 1.01038 0.95081 0.96350 1.20153 0.89653 0.85240 1.00758 1.46118 1.19277 1.05684 1.66000 1.20470 0.88594 0.82489 0.77633 1.90685 1.28708 1.75763 1.47015 1.22539 0.98039 0.95316 0.97740 0.87592 1.21906 1.01018 0.96501 0.92733 1.23583 0.99946 0.89973 1.05099 0.86790 1.23443 0.99386 0.99326 0.96930 1.23274 1.02848 1.01752 0.90259 0.87162 1.21785 0.99888 0.91136 0.98642 1.20820 1.00529 0.94458 0.97121 1.20939 0.99227 0.95333 0.99238 1.21184 0.97838 0.99912 0.94277 1.20466 0.97208 0.93766 0.96291 1.20426 0.95192 0.91799 0.89754 0.92633 0.91130 0.95146 0.90617 0.91464 0.90384 0.91181 0.76148 0.91000 0.90293 0.88856 0.88405 0.90724 0.90049 0.86535 0.86353 0.86329 0.94204 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.33 13.97 55.49 0.78 -26.55 16 2 C 0.02 0.65 5.29 -17.43 -0.09 0.56 16 3 Si 0.88 21.81 24.16 -169.99 -4.11 17.71 16 4 H -0.29 -6.70 6.44 56.52 0.36 -6.34 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.27 -6.61 6.60 56.52 0.37 -6.23 16 7 C -0.26 -6.99 10.14 -15.06 -0.15 -7.14 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.60 -14.03 2.76 -173.77 -0.48 -14.51 16 10 C 0.14 2.75 6.51 -3.76 -0.02 2.73 16 11 C -0.10 -1.64 5.24 -28.04 -0.15 -1.78 16 12 C -0.04 -0.62 5.76 -104.60 -0.60 -1.23 16 13 C -0.12 -1.67 5.26 -104.46 -0.55 -2.22 16 14 C 0.16 2.03 5.10 -5.19 -0.03 2.01 16 15 N -0.72 -8.25 5.51 -61.47 -0.34 -8.59 16 16 C 0.52 6.38 7.14 -10.98 -0.08 6.30 16 17 O -0.54 -8.50 15.72 5.56 0.09 -8.41 16 18 C -0.12 -1.11 3.30 -89.70 -0.30 -1.41 16 19 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.08 -0.70 6.09 -24.99 -0.15 -0.86 16 21 C -0.17 -1.32 7.04 -88.20 -0.62 -1.94 16 22 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 23 C -0.15 -1.15 10.21 -25.43 -0.26 -1.41 16 24 C -0.16 -1.33 6.85 -89.51 -0.61 -1.95 16 25 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 26 C -0.08 -0.74 5.69 -25.08 -0.14 -0.89 16 27 C -0.11 -1.39 9.65 -39.69 -0.38 -1.78 16 28 C -0.13 -1.70 10.05 -39.67 -0.40 -2.09 16 29 C -0.11 -1.77 9.62 -39.46 -0.38 -2.15 16 30 C -0.08 -1.37 5.82 -104.56 -0.61 -1.98 16 31 C 0.15 3.31 3.99 -4.92 -0.02 3.29 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.07 1.33 7.96 -51.93 -0.41 0.91 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.07 0.96 6.25 -51.93 -0.32 0.64 16 37 H 0.08 1.03 6.35 -51.93 -0.33 0.70 16 38 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 39 H 0.40 4.30 8.46 -40.82 -0.35 3.95 16 40 H 0.07 0.64 8.04 -51.93 -0.42 0.23 16 41 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.90 7.43 -51.93 -0.39 0.52 16 46 H 0.12 1.21 8.02 -52.48 -0.42 0.79 16 47 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 48 H 0.12 1.73 8.05 -52.49 -0.42 1.30 16 49 H 0.04 0.87 6.46 -51.93 -0.34 0.54 16 50 H 0.09 1.99 4.94 -51.93 -0.26 1.73 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -31.43 388.67 -11.67 -43.10 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -7.92 Total: 5.34 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -5.55 Total: -13.93 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.04 Total: -49.65 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.11 Total: 17.71 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.43 -11.67 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051296108.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.222 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds