Wall clock time and date at job start Wed Apr 1 2020 00:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42908 * 113.99817 * 2 1 4 4 H 1.09000 * 109.47051 * 29.99972 * 3 2 1 5 5 C 1.50703 * 109.47022 * 269.99713 * 3 2 1 6 6 O 1.21279 * 120.00268 * 322.20389 * 5 3 2 7 7 N 1.34772 * 119.99750 * 142.19517 * 5 3 2 8 8 C 1.47138 * 121.06474 * 354.91026 * 7 5 3 9 9 C 1.53220 * 108.72818 * 127.72383 * 8 7 5 10 10 O 1.43112 * 109.35192 * 54.20295 * 9 8 7 11 11 C 1.42363 * 113.98934 * 300.21623 * 10 9 8 12 12 C 1.52918 * 114.29856 * 285.05189 * 11 10 9 13 13 N 1.47166 * 87.84847 * 271.72472 * 12 11 10 14 14 C 1.36938 * 135.99912 * 153.32561 * 13 12 11 15 15 H 1.07997 * 120.00045 * 4.85412 * 14 13 12 16 16 C 1.38810 * 119.99805 * 184.84892 * 14 13 12 17 17 N 1.31617 * 119.99738 * 5.19771 * 16 14 13 18 18 Si 1.86794 * 120.00058 * 185.19593 * 16 14 13 19 19 H 1.48505 * 109.47248 * 265.00852 * 18 16 14 20 20 H 1.48500 * 109.47253 * 25.00347 * 18 16 14 21 21 H 1.48494 * 109.47583 * 145.00860 * 18 16 14 22 22 C 1.47180 * 87.99787 * 333.57971 * 13 12 11 23 23 C 1.47362 * 121.06502 * 174.93634 * 7 5 3 24 24 C 1.52992 * 109.46934 * 149.99877 * 3 2 1 25 25 H 1.09006 * 110.43760 * 55.61245 * 24 3 2 26 26 C 1.54808 * 110.49198 * 292.91796 * 24 3 2 27 27 C 1.54990 * 102.09815 * 220.44332 * 26 24 3 28 28 O 1.44383 * 103.48773 * 37.02489 * 27 26 24 29 29 C 1.43747 * 106.97243 * 319.93750 * 28 27 26 30 30 H 1.09008 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47656 * 299.99779 * 1 2 3 32 32 H 1.09005 * 109.47430 * 60.00595 * 1 2 3 33 33 H 1.08998 * 109.59800 * 247.50166 * 8 7 5 34 34 H 1.09004 * 109.59109 * 7.95169 * 8 7 5 35 35 H 1.09004 * 109.49048 * 174.16586 * 9 8 7 36 36 H 1.09004 * 109.48945 * 294.23313 * 9 8 7 37 37 H 1.08996 * 113.49310 * 156.97520 * 12 11 10 38 38 H 1.09003 * 113.48963 * 26.46695 * 12 11 10 39 39 H 0.97005 * 119.99797 * 179.97438 * 17 16 14 40 40 H 1.08998 * 113.48614 * 141.16832 * 22 13 12 41 41 H 1.08994 * 113.48971 * 271.67971 * 22 13 12 42 42 H 1.08999 * 109.74978 * 108.58907 * 23 7 5 43 43 H 1.09000 * 109.78139 * 347.88939 * 23 7 5 44 44 H 1.09003 * 110.90467 * 338.64612 * 26 24 3 45 45 H 1.09001 * 110.90303 * 102.24523 * 26 24 3 46 46 H 1.08995 * 110.62031 * 278.52489 * 27 26 24 47 47 H 1.08999 * 110.75356 * 155.58666 * 27 26 24 48 48 H 1.09002 * 109.87943 * 267.08673 * 29 28 27 49 49 H 1.09006 * 110.00171 * 146.00908 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 2.5666 0.9724 -2.2692 7 7 2.0059 3.0549 -1.7488 8 6 1.4726 4.0113 -0.7660 9 6 2.3965 5.2326 -0.7167 10 8 2.5548 5.7612 -2.0372 11 6 3.1161 4.8399 -2.9660 12 6 4.6186 4.6118 -2.7962 13 7 4.8377 5.7530 -3.6991 14 6 5.8272 6.6795 -3.8935 15 1 6.7497 6.6092 -3.3364 16 6 5.6445 7.7088 -4.8067 17 7 4.4840 7.8548 -5.4102 18 14 7.0456 8.8867 -5.1790 19 1 6.9156 10.0958 -4.3267 20 1 8.3418 8.2192 -4.8966 21 1 6.9936 9.2816 -6.6096 22 6 3.5240 5.4657 -4.2972 23 6 2.3040 3.5530 -3.1032 24 6 3.3587 1.2633 0.7212 25 1 4.0102 0.5168 0.2668 26 6 3.1587 0.9673 2.2275 27 6 4.1913 1.9177 2.8853 28 8 4.1378 3.0987 2.0564 29 6 4.0283 2.6510 0.6948 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 0.4714 4.3221 -1.0645 34 1 1.4342 3.5420 0.2171 35 1 1.9592 5.9936 -0.0703 36 1 3.3695 4.9369 -0.3242 37 1 4.9628 3.6619 -3.2051 38 1 4.9726 4.7873 -1.7803 39 1 4.3562 8.5744 -6.0481 40 1 2.9551 6.3613 -4.5469 41 1 3.5675 4.7503 -5.1184 42 1 1.3739 3.7591 -3.6329 43 1 2.8825 2.8090 -3.6509 44 1 2.1452 1.2167 2.5417 45 1 3.3894 -0.0738 2.4533 46 1 5.1880 1.4771 2.8618 47 1 3.9014 2.1540 3.9091 48 1 5.0198 2.5758 0.2484 49 1 3.4158 3.3471 0.1216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053358348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:35 Heat of formation + Delta-G solvation = -72.930791 kcal Electronic energy + Delta-G solvation = -32605.166100 eV Core-core repulsion = 28343.208231 eV Total energy + Delta-G solvation = -4261.957870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17800 -39.70807 -38.84066 -37.51637 -36.43267 -34.59680 -33.20550 -32.28128 -30.63871 -29.74169 -28.33126 -27.48327 -26.65538 -25.15464 -24.88947 -23.43615 -23.13472 -21.99073 -21.03255 -19.41581 -18.95852 -18.10572 -17.28633 -16.79710 -16.76023 -16.30601 -15.84364 -15.67812 -15.46368 -15.13114 -14.85550 -14.79235 -14.65267 -14.46685 -14.22120 -13.82824 -13.48751 -13.41727 -13.05164 -12.74777 -12.65994 -12.31588 -12.19152 -12.02705 -11.85038 -11.61715 -11.46030 -11.42370 -11.15112 -10.90253 -10.88236 -10.83594 -10.79784 -10.68357 -10.16190 -10.03014 -9.89377 -9.64874 -9.35309 -9.13347 -8.84211 -8.38756 -6.86677 -5.73876 -3.07575 2.39593 2.66958 3.28423 3.41606 3.46292 3.48555 3.67602 3.98502 4.04835 4.30537 4.33586 4.45581 4.53672 4.66871 4.76306 4.83991 4.89475 4.91936 4.96630 5.02736 5.04819 5.14813 5.18216 5.28535 5.35009 5.36607 5.40097 5.43919 5.52818 5.55343 5.59743 5.68756 5.73028 5.73979 5.90414 6.00100 6.23064 6.31838 6.46077 6.48652 6.57117 6.64906 6.90564 7.18401 7.25594 7.50443 7.80502 8.00169 8.03446 9.03983 9.71817 10.61963 11.42529 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.003399 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.651911 B = 8234.937098 C = 9049.457435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.355 6.355 3 C 0.083 3.917 4 H 0.086 0.914 5 C 0.491 3.509 6 O -0.518 6.518 7 N -0.610 5.610 8 C 0.062 3.938 9 C 0.039 3.961 10 O -0.327 6.327 11 C 0.046 3.954 12 C 0.100 3.900 13 N -0.598 5.598 14 C -0.216 4.216 15 H 0.081 0.919 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.290 1.290 22 C 0.167 3.833 23 C 0.102 3.898 24 C -0.114 4.114 25 H 0.102 0.898 26 C -0.141 4.141 27 C 0.043 3.957 28 O -0.370 6.370 29 C 0.032 3.968 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.254 0.746 40 H 0.091 0.909 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 -14.137 16.741 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.273 6.273 3 C 0.022 3.978 4 H 0.103 0.897 5 C 0.277 3.723 6 O -0.393 6.393 7 N -0.346 5.346 8 C -0.061 4.061 9 C -0.038 4.038 10 O -0.244 6.244 11 C 0.004 3.996 12 C -0.027 4.027 13 N -0.323 5.323 14 C -0.343 4.343 15 H 0.098 0.902 16 C -0.202 4.202 17 N -0.563 5.563 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.040 3.960 23 C -0.021 4.021 24 C -0.133 4.133 25 H 0.120 0.880 26 C -0.178 4.178 27 C -0.034 4.034 28 O -0.289 6.289 29 C -0.045 4.045 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.106 0.894 46 H 0.081 0.919 47 H 0.113 0.887 48 H 0.088 0.912 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.373 -14.040 16.134 23.351 hybrid contribution 0.502 0.325 -0.296 0.667 sum -8.870 -13.715 15.839 22.752 Atomic orbital electron populations 1.22921 0.80575 1.03448 1.00160 1.88019 1.19947 1.24815 1.94471 1.22228 0.96457 0.86672 0.92465 0.89673 1.21212 0.78116 0.81812 0.91154 1.90709 1.45436 1.52414 1.50711 1.48422 1.64314 1.08493 1.13379 1.22662 0.99138 0.91451 0.92864 1.23049 0.98582 0.95192 0.87022 1.88074 1.82108 1.36750 1.17483 1.23319 0.92249 0.88655 0.95350 1.22896 0.92071 0.92374 0.95311 1.45258 1.19321 1.29226 1.38504 1.18873 0.93699 1.01957 1.19805 0.90164 1.24770 0.97253 0.98493 0.99711 1.69815 1.21971 1.33332 1.31144 0.86090 0.81230 0.80940 0.77422 1.21530 1.20641 1.21606 1.22043 0.86949 0.98281 0.88698 1.22229 1.00784 0.96410 0.82673 1.22551 0.94925 0.99388 0.96462 0.87993 1.23131 1.00624 1.01175 0.92889 1.23616 0.98450 0.85663 0.95627 1.88920 1.95044 1.28787 1.16160 1.23637 1.01353 0.94431 0.85090 0.88911 0.93629 0.93842 0.89872 0.89137 0.87687 0.92104 0.94172 0.94130 0.93641 0.89107 0.94126 0.90599 0.87989 0.90321 0.89441 0.91913 0.88654 0.91216 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.30 16 2 O -0.36 -4.08 9.99 -51.51 -0.51 -4.59 16 3 C 0.08 0.92 1.56 -27.89 -0.04 0.87 16 4 H 0.09 0.75 5.20 -51.93 -0.27 0.48 16 5 C 0.49 7.03 6.04 -10.99 -0.07 6.96 16 6 O -0.52 -9.42 16.38 -10.72 -0.18 -9.60 16 7 N -0.61 -8.37 2.63 -172.48 -0.45 -8.83 16 8 C 0.06 0.68 5.41 -3.58 -0.02 0.66 16 9 C 0.04 0.54 6.60 37.27 0.25 0.79 16 10 O -0.33 -6.27 10.53 -35.23 -0.37 -6.64 16 11 C 0.05 0.89 1.27 -90.96 -0.12 0.78 16 12 C 0.10 2.14 7.91 -8.21 -0.06 2.07 16 13 N -0.60 -15.70 3.78 -184.95 -0.70 -16.40 16 14 C -0.22 -6.20 10.74 -15.06 -0.16 -6.36 16 15 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.36 11.43 55.49 0.63 -26.73 16 18 Si 0.91 22.41 29.56 -169.99 -5.02 17.39 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C 0.17 3.95 6.98 -8.34 -0.06 3.89 16 23 C 0.10 1.64 5.81 -3.68 -0.02 1.61 16 24 C -0.11 -1.19 2.86 -89.10 -0.25 -1.44 16 25 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 26 C -0.14 -1.09 6.57 -24.73 -0.16 -1.25 16 27 C 0.04 0.35 7.72 38.21 0.29 0.65 16 28 O -0.37 -4.29 11.52 -35.23 -0.41 -4.70 16 29 C 0.03 0.37 6.90 37.73 0.26 0.63 16 30 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.05 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.77 4.82 -51.93 -0.25 0.52 16 35 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.88 5.30 -51.93 -0.28 0.61 16 37 H 0.04 0.84 7.93 -51.93 -0.41 0.43 16 38 H 0.04 0.85 7.36 -51.93 -0.38 0.47 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.09 2.42 6.88 -51.93 -0.36 2.07 16 41 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.10 1.75 6.94 -51.93 -0.36 1.39 16 44 H 0.08 0.54 7.82 -51.93 -0.41 0.13 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.10 1.23 1.73 -51.93 -0.09 1.14 16 LS Contribution 377.52 15.07 5.69 5.69 Total: -1.00 -35.26 377.52 -7.91 -43.16 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.42 Total: 0.34 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 0.83 Total: 10.91 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.52 Total: -51.96 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.47 Total: -25.53 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.26 -7.91 -43.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053358348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.767 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds