Wall clock time and date at job start Wed Apr 1 2020 00:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42908 * 113.99817 * 2 1 4 4 H 1.09000 * 109.47051 * 29.99972 * 3 2 1 5 5 C 1.50703 * 109.47022 * 269.99713 * 3 2 1 6 6 O 1.21279 * 120.00268 * 322.20389 * 5 3 2 7 7 N 1.34772 * 119.99750 * 142.19517 * 5 3 2 8 8 C 1.47138 * 121.06474 * 354.91026 * 7 5 3 9 9 C 1.53220 * 108.72818 * 127.72383 * 8 7 5 10 10 O 1.43112 * 109.35192 * 54.20295 * 9 8 7 11 11 C 1.42363 * 113.98934 * 300.21623 * 10 9 8 12 12 C 1.52918 * 114.29856 * 285.05189 * 11 10 9 13 13 N 1.47166 * 87.84847 * 271.72472 * 12 11 10 14 14 C 1.36938 * 135.99912 * 153.32561 * 13 12 11 15 15 H 1.07997 * 120.00045 * 4.85412 * 14 13 12 16 16 C 1.38810 * 119.99805 * 184.84892 * 14 13 12 17 17 N 1.31617 * 119.99738 * 5.19771 * 16 14 13 18 18 Si 1.86794 * 120.00058 * 185.19593 * 16 14 13 19 19 H 1.48505 * 109.47248 * 265.00852 * 18 16 14 20 20 H 1.48500 * 109.47253 * 25.00347 * 18 16 14 21 21 H 1.48494 * 109.47583 * 145.00860 * 18 16 14 22 22 C 1.47180 * 87.99787 * 333.57971 * 13 12 11 23 23 C 1.47362 * 121.06502 * 174.93634 * 7 5 3 24 24 C 1.52992 * 109.46934 * 149.99877 * 3 2 1 25 25 H 1.09006 * 110.43760 * 55.61245 * 24 3 2 26 26 C 1.54808 * 110.49198 * 292.91796 * 24 3 2 27 27 C 1.54990 * 102.09815 * 220.44332 * 26 24 3 28 28 O 1.44383 * 103.48773 * 37.02489 * 27 26 24 29 29 C 1.43747 * 106.97243 * 319.93750 * 28 27 26 30 30 H 1.09008 * 109.47250 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47656 * 299.99779 * 1 2 3 32 32 H 1.09005 * 109.47430 * 60.00595 * 1 2 3 33 33 H 1.08998 * 109.59800 * 247.50166 * 8 7 5 34 34 H 1.09004 * 109.59109 * 7.95169 * 8 7 5 35 35 H 1.09004 * 109.49048 * 174.16586 * 9 8 7 36 36 H 1.09004 * 109.48945 * 294.23313 * 9 8 7 37 37 H 1.08996 * 113.49310 * 156.97520 * 12 11 10 38 38 H 1.09003 * 113.48963 * 26.46695 * 12 11 10 39 39 H 0.97005 * 119.99797 * 179.97438 * 17 16 14 40 40 H 1.08998 * 113.48614 * 141.16832 * 22 13 12 41 41 H 1.08994 * 113.48971 * 271.67971 * 22 13 12 42 42 H 1.08999 * 109.74978 * 108.58907 * 23 7 5 43 43 H 1.09000 * 109.78139 * 347.88939 * 23 7 5 44 44 H 1.09003 * 110.90467 * 338.64612 * 26 24 3 45 45 H 1.09001 * 110.90303 * 102.24523 * 26 24 3 46 46 H 1.08995 * 110.62031 * 278.52489 * 27 26 24 47 47 H 1.08999 * 110.75356 * 155.58666 * 27 26 24 48 48 H 1.09002 * 109.87943 * 267.08673 * 29 28 27 49 49 H 1.09006 * 110.00171 * 146.00908 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 2.5666 0.9724 -2.2692 7 7 2.0059 3.0549 -1.7488 8 6 1.4726 4.0113 -0.7660 9 6 2.3965 5.2326 -0.7167 10 8 2.5548 5.7612 -2.0372 11 6 3.1161 4.8399 -2.9660 12 6 4.6186 4.6118 -2.7962 13 7 4.8377 5.7530 -3.6991 14 6 5.8272 6.6795 -3.8935 15 1 6.7497 6.6092 -3.3364 16 6 5.6445 7.7088 -4.8067 17 7 4.4840 7.8548 -5.4102 18 14 7.0456 8.8867 -5.1790 19 1 6.9156 10.0958 -4.3267 20 1 8.3418 8.2192 -4.8966 21 1 6.9936 9.2816 -6.6096 22 6 3.5240 5.4657 -4.2972 23 6 2.3040 3.5530 -3.1032 24 6 3.3587 1.2633 0.7212 25 1 4.0102 0.5168 0.2668 26 6 3.1587 0.9673 2.2275 27 6 4.1913 1.9177 2.8853 28 8 4.1378 3.0987 2.0564 29 6 4.0283 2.6510 0.6948 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8901 33 1 0.4714 4.3221 -1.0645 34 1 1.4342 3.5420 0.2171 35 1 1.9592 5.9936 -0.0703 36 1 3.3695 4.9369 -0.3242 37 1 4.9628 3.6619 -3.2051 38 1 4.9726 4.7873 -1.7803 39 1 4.3562 8.5744 -6.0481 40 1 2.9551 6.3613 -4.5469 41 1 3.5675 4.7503 -5.1184 42 1 1.3739 3.7591 -3.6329 43 1 2.8825 2.8090 -3.6509 44 1 2.1452 1.2167 2.5417 45 1 3.3894 -0.0738 2.4533 46 1 5.1880 1.4771 2.8618 47 1 3.9014 2.1540 3.9091 48 1 5.0198 2.5758 0.2484 49 1 3.4158 3.3471 0.1216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053358348.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:35 Heat of formation + Delta-G solvation = -99.053219 kcal Electronic energy + Delta-G solvation = -32606.298854 eV Core-core repulsion = 28343.208231 eV Total energy + Delta-G solvation = -4263.090623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29497 -40.96925 -39.86346 -38.47631 -37.89808 -35.90635 -34.37149 -33.96518 -31.89949 -30.68284 -29.66226 -28.56727 -27.90815 -26.76079 -26.15720 -24.70360 -24.17578 -23.31444 -22.00028 -20.73493 -20.20804 -19.07266 -18.83389 -18.21106 -17.69636 -17.38351 -17.06130 -16.98437 -16.52104 -16.28665 -16.18086 -15.86570 -15.85068 -15.62161 -15.48791 -15.11727 -14.98536 -14.67336 -14.19781 -14.08078 -13.79105 -13.55670 -13.34919 -13.11029 -12.87554 -12.78464 -12.78068 -12.70383 -12.55453 -12.32167 -12.17865 -12.06121 -11.97074 -11.77142 -11.65421 -11.60439 -11.38384 -11.00262 -10.79995 -10.67655 -10.35729 -9.66586 -8.95410 -7.91457 -5.27373 1.30497 1.44449 1.46870 1.55911 1.60343 2.44377 2.50480 2.62717 2.93723 3.13914 3.26110 3.32238 3.44940 3.50010 3.54674 3.72732 3.74099 3.88485 3.91747 4.08540 4.11453 4.22098 4.28950 4.33464 4.37519 4.48980 4.49354 4.51792 4.56766 4.62333 4.62570 4.70560 4.75090 4.80988 4.82403 4.87149 4.92805 5.01841 5.09189 5.10204 5.15412 5.20894 5.44025 5.81451 5.87292 5.88938 6.19431 6.35444 6.86269 6.92960 7.55802 8.53747 9.24527 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.003399 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.651911 B = 8234.937098 C = 9049.457435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.374 6.374 3 C 0.092 3.908 4 H 0.116 0.884 5 C 0.488 3.512 6 O -0.564 6.564 7 N -0.608 5.608 8 C 0.066 3.934 9 C 0.032 3.968 10 O -0.358 6.358 11 C 0.079 3.921 12 C 0.103 3.897 13 N -0.629 5.629 14 C -0.235 4.235 15 H 0.081 0.919 16 C -0.061 4.061 17 N -0.946 5.946 18 Si 0.982 3.018 19 H -0.284 1.284 20 H -0.270 1.270 21 H -0.291 1.291 22 C 0.160 3.840 23 C 0.111 3.889 24 C -0.114 4.114 25 H 0.085 0.915 26 C -0.129 4.129 27 C 0.037 3.963 28 O -0.387 6.387 29 C 0.033 3.967 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.042 0.958 39 H 0.250 0.750 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.119 0.881 48 H 0.050 0.950 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.084 -14.873 19.554 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.291 6.291 3 C 0.031 3.969 4 H 0.134 0.866 5 C 0.277 3.723 6 O -0.442 6.442 7 N -0.343 5.343 8 C -0.055 4.055 9 C -0.045 4.045 10 O -0.276 6.276 11 C 0.037 3.963 12 C -0.023 4.023 13 N -0.355 5.355 14 C -0.362 4.362 15 H 0.099 0.901 16 C -0.255 4.255 17 N -0.594 5.594 18 Si 0.809 3.191 19 H -0.211 1.211 20 H -0.195 1.195 21 H -0.217 1.217 22 C 0.034 3.966 23 C -0.012 4.012 24 C -0.134 4.134 25 H 0.103 0.897 26 C -0.167 4.167 27 C -0.039 4.039 28 O -0.306 6.306 29 C -0.043 4.043 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.082 0.918 47 H 0.137 0.863 48 H 0.068 0.932 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.662 -14.798 19.002 26.339 hybrid contribution 0.892 0.516 -1.096 1.504 sum -9.770 -14.282 17.906 24.901 Atomic orbital electron populations 1.23169 0.78836 1.04745 1.01146 1.88010 1.21922 1.24877 1.94334 1.22234 0.97328 0.87356 0.89960 0.86636 1.21967 0.76759 0.81295 0.92310 1.90687 1.47468 1.53667 1.52342 1.48467 1.64013 1.09029 1.12779 1.22842 0.99075 0.89792 0.93834 1.23382 0.99232 0.97291 0.84558 1.88014 1.81947 1.37938 1.19695 1.22726 0.91490 0.89232 0.92830 1.22977 0.93977 0.90921 0.94426 1.45592 1.19700 1.30217 1.39945 1.19241 0.94426 1.02743 1.19820 0.90147 1.25638 0.99749 1.00310 0.99776 1.70011 1.23804 1.33925 1.31690 0.85026 0.78583 0.78612 0.76851 1.21086 1.19453 1.21684 1.22003 0.86119 0.97210 0.91269 1.21903 1.00658 0.94220 0.84453 1.22520 0.94315 0.98104 0.98414 0.89687 1.23127 1.01485 1.01807 0.90263 1.23862 0.98955 0.84807 0.96289 1.88903 1.95102 1.30504 1.16115 1.23509 1.00371 0.95052 0.85415 0.87692 0.90669 0.94687 0.87630 0.85783 0.84910 0.93011 0.93800 0.93944 0.94093 0.92546 0.94115 0.89136 0.89314 0.88475 0.88205 0.91794 0.86287 0.93197 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.81 113.37 1.23 1.44 16 2 O -0.37 -7.61 9.99 -133.41 -1.33 -8.94 16 3 C 0.09 1.79 1.56 29.85 0.05 1.84 16 4 H 0.12 1.48 5.20 -2.39 -0.01 1.47 16 5 C 0.49 13.36 6.04 87.66 0.53 13.89 16 6 O -0.56 -20.55 16.38 12.54 0.21 -20.34 16 7 N -0.61 -15.72 2.63 -817.98 -2.15 -17.87 16 8 C 0.07 1.25 5.41 86.33 0.47 1.72 16 9 C 0.03 0.82 6.60 72.06 0.48 1.29 16 10 O -0.36 -13.61 10.53 -148.98 -1.57 -15.18 16 11 C 0.08 3.10 1.27 -11.01 -0.01 3.09 16 12 C 0.10 4.50 7.91 83.32 0.66 5.16 16 13 N -0.63 -34.16 3.78 -739.93 -2.80 -36.96 16 14 C -0.23 -13.80 10.74 84.03 0.90 -12.90 16 15 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 16 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 17 N -0.95 -58.36 11.43 21.65 0.25 -58.11 16 18 Si 0.98 46.89 29.56 68.60 2.03 48.92 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 C 0.16 7.92 6.98 83.22 0.58 8.50 16 23 C 0.11 3.56 5.81 86.14 0.50 4.06 16 24 C -0.11 -2.17 2.86 -9.81 -0.03 -2.20 16 25 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 26 C -0.13 -1.56 6.57 31.89 0.21 -1.35 16 27 C 0.04 0.50 7.72 72.66 0.56 1.06 16 28 O -0.39 -8.17 11.52 -148.98 -1.72 -9.89 16 29 C 0.03 0.74 6.90 72.35 0.50 1.24 16 30 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 32 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.12 1.54 4.82 -2.38 -0.01 1.53 16 35 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.05 1.44 5.30 -2.38 -0.01 1.43 16 37 H 0.04 1.90 7.93 -2.39 -0.02 1.88 16 38 H 0.04 1.82 7.36 -2.39 -0.02 1.80 16 39 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 40 H 0.06 3.17 6.88 -2.39 -0.02 3.15 16 41 H 0.04 1.98 8.09 -2.39 -0.02 1.96 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.09 3.10 6.94 -2.39 -0.02 3.09 16 44 H 0.10 0.85 7.82 -2.39 -0.02 0.83 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.09 2.17 1.73 -2.38 0.00 2.17 16 Total: -1.00 -79.96 377.52 0.96 -79.00 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.97 Total: 15.65 kcal Atomic # 6 Polarization: 16.64 SS G_CDS: 7.08 Total: 23.72 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.70 Total: -112.95 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -4.41 Total: -54.35 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -79.96 0.96 -79.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053358348.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.055 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds