Wall clock time and date at job start Wed Apr 1 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00494 * 2 1 4 4 H 1.48506 * 109.46796 * 275.00023 * 3 2 1 5 5 H 1.48494 * 109.47248 * 34.99900 * 3 2 1 6 6 H 1.48498 * 109.47207 * 154.99977 * 3 2 1 7 7 C 1.38817 * 119.99205 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99397 * 174.87177 * 7 2 1 9 9 N 1.36930 * 120.00608 * 354.87823 * 7 2 1 10 10 C 1.47148 * 125.57765 * 5.09182 * 9 7 2 11 11 C 1.54631 * 107.37875 * 179.04857 * 10 9 7 12 12 C 1.53512 * 102.69911 * 339.38416 * 11 10 9 13 13 C 1.51794 * 117.00002 * 164.16740 * 12 11 10 14 14 N 1.47394 * 87.51886 * 92.92584 * 13 12 11 15 15 C 1.34770 * 135.85399 * 205.66712 * 14 13 12 16 16 O 1.21550 * 120.00183 * 355.22810 * 15 14 13 17 17 C 1.47850 * 120.00191 * 175.50385 * 15 14 13 18 18 C 1.39326 * 119.87812 * 34.53265 * 17 15 14 19 19 C 1.37943 * 119.60784 * 180.02562 * 18 17 15 20 20 C 1.38091 * 119.93147 * 0.14029 * 19 18 17 21 21 C 1.39026 * 120.85832 * 359.89101 * 20 19 18 22 22 C 1.37432 * 119.76267 * 359.63591 * 21 20 19 23 23 C 1.50606 * 122.62880 * 180.44272 * 22 21 20 24 24 C 1.52738 * 110.65643 * 342.55655 * 23 22 21 25 25 C 1.53327 * 108.36378 * 50.88157 * 24 23 22 26 26 C 1.50649 * 117.69463 * 179.67551 * 21 20 19 27 27 C 1.47397 * 88.29242 * 25.91867 * 14 13 12 28 28 C 1.47754 * 125.58389 * 185.04538 * 9 7 2 29 29 H 0.97001 * 119.99505 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.86848 * 59.59359 * 10 9 7 31 31 H 1.09004 * 109.86475 * 298.49347 * 10 9 7 32 32 H 1.09005 * 110.76728 * 221.08589 * 11 10 9 33 33 H 1.08997 * 110.76767 * 97.68548 * 11 10 9 34 34 H 1.09002 * 113.53916 * 338.26644 * 13 12 11 35 35 H 1.08994 * 113.60595 * 207.59438 * 13 12 11 36 36 H 1.08004 * 120.19444 * 0.03282 * 18 17 15 37 37 H 1.08002 * 120.03581 * 180.11368 * 19 18 17 38 38 H 1.07996 * 119.57154 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.37900 * 222.15236 * 23 22 21 40 40 H 1.09005 * 109.04093 * 102.74413 * 23 22 21 41 41 H 1.09003 * 109.68519 * 291.16505 * 24 23 22 42 42 H 1.08993 * 109.71794 * 170.61469 * 24 23 22 43 43 H 1.09002 * 109.68112 * 170.50048 * 25 24 23 44 44 H 1.09000 * 109.67906 * 49.94719 * 25 24 23 45 45 H 1.09003 * 109.25213 * 282.60123 * 26 21 20 46 46 H 1.08992 * 109.25257 * 42.02476 * 26 21 20 47 47 H 1.09003 * 113.54171 * 88.74048 * 27 14 13 48 48 H 1.08993 * 113.54325 * 219.41562 * 27 14 13 49 49 H 1.09001 * 110.40395 * 83.54418 * 28 9 7 50 50 H 1.09001 * 110.40394 * 321.11880 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3921 2.1072 -1.3948 5 1 1.5047 2.6198 0.8030 6 1 3.5967 1.4118 0.5917 7 6 2.0101 -1.2023 0.0005 8 1 3.0869 -1.2042 -0.0831 9 7 1.3295 -2.3857 0.1069 10 6 -0.1345 -2.5331 0.1206 11 6 -0.4456 -4.0437 0.2316 12 6 0.8585 -4.6933 -0.2522 13 6 1.0544 -6.1647 0.0649 14 7 0.4627 -6.4615 -1.2520 15 6 -0.2004 -7.4973 -1.8030 16 8 -0.3508 -8.5264 -1.1740 17 6 -0.7399 -7.3840 -3.1749 18 6 -0.0485 -6.6467 -4.1339 19 6 -0.5572 -6.5443 -5.4120 20 6 -1.7465 -7.1687 -5.7324 21 6 -2.4435 -7.9059 -4.7818 22 6 -1.9422 -8.0235 -3.5076 23 6 -2.6382 -8.8137 -2.4309 24 6 -4.0975 -9.0653 -2.8051 25 6 -4.1391 -9.6478 -4.2228 26 6 -3.7370 -8.5508 -5.2065 27 6 0.9176 -5.1350 -1.7062 28 6 1.9449 -3.7237 0.2258 29 1 -0.4849 0.8401 0.0004 30 1 -0.5555 -2.1351 -0.8026 31 1 -0.5519 -2.0050 0.9780 32 1 -1.2772 -4.3159 -0.4184 33 1 -0.6549 -4.3203 1.2649 34 1 0.4502 -6.5138 0.9023 35 1 2.1009 -6.4577 0.1480 36 1 0.8802 -6.1584 -3.8781 37 1 -0.0260 -5.9761 -6.1613 38 1 -2.1396 -7.0843 -6.7347 39 1 -2.5980 -8.2601 -1.4928 40 1 -2.1293 -9.7696 -2.3061 41 1 -4.6507 -8.1265 -2.7775 42 1 -4.5401 -9.7730 -2.1043 43 1 -5.1484 -9.9917 -4.4489 44 1 -3.4411 -10.4817 -4.2976 45 1 -4.5212 -7.7946 -5.2415 46 1 -3.6133 -8.9854 -6.1984 47 1 1.9263 -5.1386 -2.1194 48 1 0.1993 -4.6245 -2.3475 49 1 2.2086 -3.9299 1.2631 50 1 2.8255 -3.7951 -0.4125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072774606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:52 Heat of formation + Delta-G solvation = 45.482927 kcal Electronic energy + Delta-G solvation = -29957.852106 eV Core-core repulsion = 26144.171055 eV Total energy + Delta-G solvation = -3813.681051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.99280 -40.00054 -38.00957 -36.23642 -35.65218 -32.69521 -32.20353 -30.47256 -29.96983 -29.08016 -28.35988 -26.04343 -25.85227 -24.15134 -23.72554 -22.89581 -22.64545 -20.32143 -19.69749 -19.23128 -18.40089 -16.98938 -16.76299 -16.43403 -15.86541 -15.76416 -15.23344 -15.22119 -14.77648 -14.41363 -14.03982 -14.03425 -13.82306 -13.79950 -13.26534 -13.15955 -12.80357 -12.66481 -12.50619 -12.30528 -12.04887 -11.93967 -11.90476 -11.79286 -11.59490 -11.05442 -11.01401 -10.97041 -10.81187 -10.68771 -10.49193 -10.42477 -10.17038 -10.12254 -9.85262 -9.69583 -9.52539 -8.92477 -8.70653 -8.60865 -8.51079 -6.85949 -5.74496 -3.07577 0.85016 1.23735 2.81747 2.89306 3.38068 3.43992 3.45855 3.66338 4.34805 4.42262 4.46072 4.53366 4.63675 4.72471 4.82405 4.91647 4.95486 4.99185 5.10567 5.20506 5.25636 5.37861 5.43394 5.44536 5.48180 5.59852 5.63446 5.65275 5.65489 5.68090 5.76149 5.80508 5.81974 5.84761 5.91758 5.94017 6.09160 6.15179 6.19246 6.21824 6.25108 6.32309 6.43749 6.49257 6.51493 6.64492 6.68860 6.79591 7.52552 7.60384 7.79633 7.81724 8.21241 8.22726 9.18757 9.79024 10.44966 11.37295 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016613 B = 0.002719 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.062144 B =10296.315867 C =10813.000052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.120 3.880 14 N -0.637 5.637 15 C 0.585 3.415 16 O -0.542 6.542 17 C -0.126 4.126 18 C -0.086 4.086 19 C -0.128 4.128 20 C -0.099 4.099 21 C -0.089 4.089 22 C -0.022 4.022 23 C -0.078 4.078 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.078 4.078 27 C 0.117 3.883 28 C 0.154 3.846 29 H 0.252 0.748 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.027 0.973 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -17.367 -9.964 20.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.002 4.002 14 N -0.371 5.371 15 C 0.376 3.624 16 O -0.421 6.421 17 C -0.128 4.128 18 C -0.104 4.104 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.089 4.089 22 C -0.023 4.023 23 C -0.115 4.115 24 C -0.160 4.160 25 C -0.158 4.158 26 C -0.115 4.115 27 C -0.005 4.005 28 C 0.027 3.973 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.045 0.955 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.743 -17.855 -9.719 21.124 hybrid contribution 0.641 1.093 -0.147 1.276 sum -5.102 -16.762 -9.866 20.107 Atomic orbital electron populations 1.69971 1.04899 1.25039 1.56805 1.24812 0.95693 0.97657 1.02172 0.86131 0.78699 0.83669 0.77451 1.21711 1.21678 1.20639 1.19036 0.90792 0.82400 1.43476 0.90413 1.44533 1.01550 1.00442 1.86567 1.21225 0.84306 0.87893 1.01078 1.22461 0.94164 0.98946 0.99914 1.22198 1.00019 0.93335 0.95125 1.22786 0.98426 0.93035 0.85959 1.49733 1.54444 1.16783 1.16137 1.17800 0.77746 0.81407 0.85487 1.90752 1.59914 1.27868 1.63548 1.19869 0.97247 1.01964 0.93760 1.21347 0.99624 0.96287 0.93155 1.21009 0.96597 1.00551 0.96491 1.21318 0.94862 0.96428 0.99121 1.19542 0.97240 0.99386 0.92710 1.19600 0.93079 0.95345 0.94248 1.20534 0.94286 1.00437 0.96247 1.21619 0.96541 1.01243 0.96592 1.21559 1.01422 0.97859 0.94941 1.20454 0.94040 0.97790 0.99170 1.22965 0.99855 0.79910 0.97760 1.21134 0.93126 0.85459 0.97591 0.93758 0.93882 0.93492 0.92138 0.91773 0.90385 0.89727 0.85399 0.85405 0.85854 0.90306 0.89570 0.91689 0.91340 0.91460 0.91584 0.90533 0.90780 0.89473 0.89934 0.95492 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.33 55.49 0.57 -25.80 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 21.58 29.56 -169.99 -5.02 16.55 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.12 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -14.60 3.41 -170.53 -0.58 -15.18 16 10 C 0.18 4.18 5.40 -2.83 -0.02 4.16 16 11 C -0.12 -2.11 6.41 -25.61 -0.16 -2.27 16 12 C -0.11 -1.69 1.06 -155.21 -0.16 -1.86 16 13 C 0.12 1.72 8.03 -7.46 -0.06 1.66 16 14 N -0.64 -9.54 3.68 -186.79 -0.69 -10.23 16 15 C 0.58 9.36 7.14 -12.33 -0.09 9.27 16 16 O -0.54 -9.88 15.22 5.32 0.08 -9.80 16 17 C -0.13 -1.78 5.79 -104.83 -0.61 -2.39 16 18 C -0.09 -1.07 8.71 -39.28 -0.34 -1.41 16 19 C -0.13 -1.37 10.03 -39.74 -0.40 -1.77 16 20 C -0.10 -1.00 9.60 -39.34 -0.38 -1.38 16 21 C -0.09 -0.98 5.73 -104.65 -0.60 -1.58 16 22 C -0.02 -0.29 5.77 -104.23 -0.60 -0.89 16 23 C -0.08 -0.98 4.19 -28.06 -0.12 -1.09 16 24 C -0.12 -1.17 5.98 -26.70 -0.16 -1.33 16 25 C -0.12 -0.98 5.98 -26.70 -0.16 -1.14 16 26 C -0.08 -0.65 5.67 -28.05 -0.16 -0.81 16 27 C 0.12 1.71 5.67 -7.32 -0.04 1.67 16 28 C 0.15 2.90 6.70 -3.22 -0.02 2.88 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.04 1.11 7.53 -51.93 -0.39 0.72 16 31 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 32 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 0.93 8.05 -52.49 -0.42 0.51 16 39 H 0.08 1.12 6.89 -51.93 -0.36 0.77 16 40 H 0.09 1.14 7.78 -51.93 -0.40 0.74 16 41 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 48 H 0.08 1.25 7.71 -51.93 -0.40 0.85 16 49 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -31.23 388.36 -12.25 -43.47 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.13 Total: -0.02 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -4.33 Total: -4.85 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.70 Total: -51.21 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.23 -12.25 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072774606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.958 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds