Wall clock time and date at job start Wed Apr 1 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48500 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47525 * 59.99957 * 3 2 1 6 6 H 1.48505 * 109.47256 * 299.99812 * 3 2 1 7 7 C 1.38809 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99807 * 155.86915 * 7 2 1 9 9 N 1.36937 * 119.99967 * 335.86121 * 7 2 1 10 10 C 1.46610 * 119.89485 * 327.29075 * 9 7 2 11 11 C 1.53103 * 108.01012 * 237.32004 * 10 9 7 12 12 C 1.53008 * 109.44965 * 301.02093 * 11 10 9 13 13 H 1.08995 * 113.42823 * 275.04407 * 12 11 10 14 14 C 1.54655 * 110.83587 * 143.88578 * 12 11 10 15 15 N 1.47800 * 85.79509 * 270.23253 * 14 12 11 16 16 C 1.34777 * 135.00952 * 153.82431 * 15 14 12 17 17 O 1.21553 * 119.99717 * 177.35768 * 16 15 14 18 18 C 1.47846 * 120.00469 * 357.36305 * 16 15 14 19 19 C 1.39605 * 120.26593 * 7.60888 * 18 16 15 20 20 C 1.37628 * 119.61662 * 180.10124 * 19 18 16 21 21 C 1.39072 * 120.75437 * 359.89385 * 20 19 18 22 22 C 1.37826 * 119.90768 * 359.94937 * 21 20 19 23 23 C 1.38649 * 119.82118 * 359.94258 * 22 21 20 24 24 C 1.50657 * 122.55584 * 180.40133 * 22 21 20 25 25 C 1.52729 * 110.60455 * 342.28839 * 24 22 21 26 26 C 1.53328 * 108.36346 * 51.11622 * 25 24 22 27 27 C 1.50688 * 117.59895 * 179.72827 * 21 20 19 28 28 C 1.46814 * 89.97748 * 333.80889 * 15 14 12 29 29 H 1.08997 * 111.56114 * 274.48058 * 28 15 14 30 30 C 1.45683 * 119.88547 * 147.01262 * 9 7 2 31 31 H 0.96998 * 119.99968 * 174.23455 * 1 2 3 32 32 H 1.09002 * 109.75298 * 356.95442 * 10 9 7 33 33 H 1.09000 * 109.75761 * 117.64199 * 10 9 7 34 34 H 1.09004 * 109.46944 * 61.01872 * 11 10 9 35 35 H 1.09005 * 109.47805 * 181.02513 * 11 10 9 36 36 H 1.08997 * 113.81691 * 24.45765 * 14 12 11 37 37 H 1.09003 * 113.81802 * 156.01377 * 14 12 11 38 38 H 1.08008 * 120.19128 * 0.12981 * 19 18 16 39 39 H 1.07996 * 119.62149 * 179.90881 * 20 19 18 40 40 H 1.08002 * 119.78708 * 180.08838 * 23 22 21 41 41 H 1.09008 * 109.25098 * 222.00435 * 24 22 21 42 42 H 1.08997 * 109.25711 * 102.58157 * 24 22 21 43 43 H 1.08997 * 109.68218 * 291.40434 * 25 24 22 44 44 H 1.08995 * 109.69096 * 170.83529 * 25 24 22 45 45 H 1.08997 * 109.67901 * 170.32901 * 26 25 24 46 46 H 1.09002 * 109.71556 * 49.78992 * 26 25 24 47 47 H 1.09000 * 109.25392 * 282.76150 * 27 21 20 48 48 H 1.09008 * 109.25123 * 42.18401 * 27 21 20 49 49 H 1.08998 * 108.71611 * 261.74589 * 30 9 7 50 50 H 1.08997 * 108.71818 * 19.77500 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 1.2125 6 1 1.8915 2.3964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0194 -1.2432 -0.3818 9 7 1.4153 -2.3360 0.4860 10 6 0.4554 -2.2420 1.5902 11 6 0.9611 -3.1259 2.7335 12 6 1.0936 -4.5687 2.2417 13 1 0.1630 -5.1333 2.2990 14 6 2.3184 -5.2592 2.8859 15 7 3.0796 -4.7475 1.7270 16 6 4.3687 -4.4264 1.5000 17 8 4.7187 -4.0627 0.3942 18 6 5.3571 -4.5165 2.5957 19 6 4.9996 -5.0817 3.8211 20 6 5.9297 -5.1569 4.8327 21 6 7.2223 -4.6783 4.6474 22 6 7.5824 -4.1221 3.4388 23 6 6.6540 -4.0433 2.4121 24 6 8.9674 -3.5936 3.1702 25 6 9.7170 -3.3601 4.4802 26 6 9.6227 -4.6363 5.3249 27 6 8.1810 -4.7908 5.8045 28 6 1.8496 -4.7343 0.9256 29 1 1.6571 -5.7062 0.4712 30 6 1.7338 -3.6309 -0.1005 31 1 -0.4850 -0.8358 -0.0844 32 1 0.3826 -1.2083 1.9281 33 1 -0.5227 -2.5908 1.2589 34 1 1.9336 -2.7653 3.0687 35 1 0.2541 -3.0880 3.5623 36 1 2.6195 -4.8225 3.8381 37 1 2.2442 -6.3462 2.9187 38 1 3.9989 -5.4582 3.9743 39 1 5.6528 -5.5928 5.7812 40 1 6.9372 -3.6087 1.4648 41 1 8.8935 -2.6521 2.6258 42 1 9.5166 -4.3153 2.5657 43 1 9.2635 -2.5286 5.0196 44 1 10.7627 -3.1354 4.2700 45 1 10.2889 -4.5580 6.1839 46 1 9.9029 -5.4989 4.7203 47 1 7.9589 -4.0105 6.5324 48 1 8.0619 -5.7662 6.2764 49 1 0.9532 -3.8928 -0.8148 50 1 2.6803 -3.5496 -0.6349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084813144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:54 Heat of formation + Delta-G solvation = 42.583503 kcal Electronic energy + Delta-G solvation = -30403.288401 eV Core-core repulsion = 26589.481621 eV Total energy + Delta-G solvation = -3813.806780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.86596 -39.92549 -37.80449 -35.96550 -35.48996 -32.70483 -31.92317 -30.97854 -30.70105 -29.06983 -28.47020 -26.93095 -24.41523 -23.97439 -23.14875 -22.95671 -22.10120 -21.27555 -20.37429 -19.30623 -17.92943 -17.44329 -16.58443 -16.09579 -15.98482 -15.78108 -15.16187 -14.67703 -14.47023 -14.19333 -14.11070 -13.99034 -13.71247 -13.59007 -13.47766 -13.19075 -13.10235 -12.89770 -12.58058 -12.51355 -12.28151 -11.86412 -11.83640 -11.52646 -11.49299 -11.16166 -11.04352 -10.85560 -10.70738 -10.64727 -10.56954 -10.45883 -10.07256 -9.95643 -9.83685 -9.33071 -9.09033 -8.83497 -8.65255 -8.37794 -8.20230 -6.75081 -5.97495 -3.18375 0.91595 1.31231 3.05252 3.06524 3.56681 3.58789 3.74949 3.92466 4.35399 4.42885 4.54062 4.60868 4.63235 4.67738 4.82971 4.87886 4.94608 5.08167 5.11475 5.24963 5.28470 5.29474 5.32796 5.36904 5.40351 5.48819 5.54613 5.60035 5.62392 5.64011 5.73748 5.77936 5.79343 5.89267 5.92490 5.93472 6.03823 6.05825 6.12623 6.30436 6.36513 6.40143 6.47287 6.52086 6.54931 6.76910 6.88318 6.93427 7.06842 7.22584 8.07039 8.23867 8.55915 8.69672 9.24465 9.94807 10.36277 11.29437 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.003507 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.037275 B = 7982.436045 C = 9270.521621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.023 4.023 3 Si 1.067 2.933 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.341 4.341 8 H 0.053 0.947 9 N -0.588 5.588 10 C 0.152 3.848 11 C -0.120 4.120 12 C -0.106 4.106 13 H 0.090 0.910 14 C 0.087 3.913 15 N -0.623 5.623 16 C 0.581 3.419 17 O -0.530 6.530 18 C -0.120 4.120 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.060 4.060 22 C -0.086 4.086 23 C -0.061 4.061 24 C -0.081 4.081 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.082 4.082 28 C 0.132 3.868 29 H 0.077 0.923 30 C 0.143 3.857 31 H 0.268 0.732 32 H 0.080 0.920 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.018 0.982 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.004 -14.011 14.240 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.225 4.225 3 Si 0.897 3.103 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.470 4.470 8 H 0.071 0.929 9 N -0.312 5.312 10 C 0.026 3.974 11 C -0.159 4.159 12 C -0.126 4.126 13 H 0.108 0.892 14 C -0.036 4.036 15 N -0.358 5.358 16 C 0.372 3.628 17 O -0.407 6.407 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.149 4.149 21 C -0.061 4.061 22 C -0.086 4.086 23 C -0.080 4.080 24 C -0.118 4.118 25 C -0.157 4.157 26 C -0.157 4.157 27 C -0.119 4.119 28 C 0.029 3.971 29 H 0.095 0.905 30 C 0.016 3.984 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.141 0.859 40 H 0.152 0.848 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.036 0.964 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.263 -12.100 13.636 22.545 hybrid contribution 0.082 -1.856 -0.081 1.860 sum 13.345 -13.956 13.555 23.592 Atomic orbital electron populations 1.70723 1.06541 1.30212 1.48388 1.25839 0.96549 1.01419 0.98669 0.83511 0.74597 0.75631 0.76586 1.21830 1.21739 1.22083 1.20022 0.96928 0.88063 1.41995 0.92914 1.43550 1.50415 1.01763 1.35460 1.20821 0.90940 0.98898 0.86736 1.21922 1.01518 0.93188 0.99273 1.22901 0.96327 0.98130 0.95196 0.89233 1.23791 0.89852 0.98630 0.91333 1.49602 1.05937 1.64378 1.15890 1.17761 0.80086 0.77422 0.87580 1.90767 1.78236 1.47154 1.24544 1.19910 0.94666 1.03059 0.94651 1.21850 1.00259 0.97916 0.92346 1.21060 0.92975 1.01697 0.99138 1.19784 0.94606 0.97119 0.94550 1.19546 0.95994 0.99926 0.93096 1.21308 0.91433 0.96222 0.99016 1.20480 0.91906 1.01342 0.98068 1.21552 1.00224 0.97986 0.95978 1.21550 0.95941 0.98410 0.99838 1.20515 0.93511 1.02380 0.95455 1.22443 0.80332 0.99693 0.94660 0.90543 1.20264 1.00028 0.85652 0.92442 0.92137 0.90182 0.96319 0.92003 0.92559 0.89557 0.89918 0.84359 0.85864 0.84850 0.90430 0.90574 0.91489 0.91372 0.91465 0.91599 0.90444 0.90718 0.96447 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.00 12.50 55.49 0.69 -27.30 16 2 C -0.02 -0.68 4.64 -17.43 -0.08 -0.76 16 3 Si 1.07 26.67 29.98 -169.99 -5.10 21.57 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.34 -10.07 9.36 -15.06 -0.14 -10.21 16 8 H 0.05 1.67 7.93 -52.49 -0.42 1.25 16 9 N -0.59 -15.28 2.79 -174.87 -0.49 -15.77 16 10 C 0.15 3.53 4.71 -3.93 -0.02 3.51 16 11 C -0.12 -2.16 5.66 -26.67 -0.15 -2.31 16 12 C -0.11 -1.60 4.39 -89.97 -0.40 -2.00 16 13 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 14 C 0.09 1.10 5.97 -3.01 -0.02 1.08 16 15 N -0.62 -10.87 3.34 -174.91 -0.58 -11.45 16 16 C 0.58 11.43 7.91 -12.33 -0.10 11.33 16 17 O -0.53 -12.52 15.56 5.32 0.08 -12.44 16 18 C -0.12 -1.95 5.87 -105.08 -0.62 -2.57 16 19 C -0.11 -1.38 9.15 -39.29 -0.36 -1.74 16 20 C -0.13 -1.45 9.58 -39.49 -0.38 -1.83 16 21 C -0.06 -0.67 5.75 -104.47 -0.60 -1.27 16 22 C -0.09 -1.07 5.73 -104.64 -0.60 -1.67 16 23 C -0.06 -0.94 9.16 -39.05 -0.36 -1.29 16 24 C -0.08 -0.80 5.66 -28.04 -0.16 -0.96 16 25 C -0.12 -0.96 5.98 -26.70 -0.16 -1.12 16 26 C -0.12 -0.87 5.98 -26.71 -0.16 -1.03 16 27 C -0.08 -0.66 5.66 -28.03 -0.16 -0.82 16 28 C 0.13 2.36 4.22 -69.42 -0.29 2.07 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 30 C 0.14 3.27 6.21 -5.43 -0.03 3.24 16 31 H 0.27 8.19 6.94 -40.82 -0.28 7.91 16 32 H 0.08 2.11 6.39 -51.93 -0.33 1.77 16 33 H 0.02 0.43 7.99 -51.93 -0.41 0.02 16 34 H 0.06 1.24 7.69 -51.93 -0.40 0.84 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.00 6.03 -51.93 -0.31 0.69 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.14 1.56 3.83 -52.48 -0.20 1.36 16 39 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 40 H 0.13 2.16 7.65 -52.49 -0.40 1.75 16 41 H 0.08 0.78 8.13 -51.92 -0.42 0.36 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.07 0.51 8.12 -51.92 -0.42 0.08 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 1.87 6.41 -51.93 -0.33 1.54 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -34.97 381.74 -12.22 -47.19 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.80 Total: 0.79 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -4.78 Total: -8.34 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.38 Total: -54.52 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.44 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -5.10 Total: 21.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.97 -12.22 -47.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084813144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.774 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds