Wall clock time and date at job start Wed Apr 1 2020 00:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99869 * 2 1 4 4 H 1.48490 * 109.46982 * 240.00140 * 3 2 1 5 5 H 1.48497 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46853 * 120.00065 * 3 2 1 7 7 C 1.38810 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99947 * 154.82533 * 7 2 1 9 9 N 1.36934 * 119.99907 * 334.82405 * 7 2 1 10 10 C 1.44345 * 116.42726 * 333.23749 * 9 7 2 11 11 C 1.51571 * 113.01606 * 188.03027 * 10 9 7 12 12 C 1.52909 * 111.66464 * 320.12609 * 11 10 9 13 13 H 1.09005 * 112.47422 * 293.93763 * 12 11 10 14 14 C 1.55408 * 106.56991 * 169.88537 * 12 11 10 15 15 N 1.47384 * 106.74129 * 270.99227 * 14 12 11 16 16 C 1.34775 * 125.74312 * 179.02899 * 15 14 12 17 17 O 1.21557 * 120.00058 * 5.46669 * 16 15 14 18 18 C 1.47845 * 120.00196 * 185.46322 * 16 15 14 19 19 C 1.40089 * 120.19831 * 36.43136 * 18 16 15 20 20 C 1.37943 * 119.83313 * 180.02562 * 19 18 16 21 21 C 1.38252 * 120.09327 * 359.97438 * 20 19 18 22 22 C 1.38617 * 120.53176 * 0.02562 * 21 20 19 23 23 C 1.38221 * 120.05884 * 359.97438 * 22 21 20 24 24 C 1.51358 * 109.86197 * 179.97438 * 23 22 21 25 25 C 1.54356 * 105.14830 * 342.85072 * 24 23 22 26 26 C 1.51397 * 130.31196 * 179.97438 * 22 21 20 27 27 C 1.47930 * 108.51353 * 359.29373 * 15 14 12 28 28 C 1.54106 * 109.62512 * 60.85737 * 12 11 10 29 29 H 1.08999 * 109.18826 * 187.52646 * 28 12 11 30 30 C 1.43982 * 116.42364 * 153.22626 * 9 7 2 31 31 H 0.96997 * 119.99922 * 359.97438 * 1 2 3 32 32 H 1.09008 * 108.77043 * 67.12257 * 10 9 7 33 33 H 1.08994 * 108.68435 * 308.88075 * 10 9 7 34 34 H 1.08996 * 109.04170 * 199.56265 * 11 10 9 35 35 H 1.09000 * 108.98040 * 80.64436 * 11 10 9 36 36 H 1.09008 * 110.00525 * 151.67234 * 14 12 11 37 37 H 1.08997 * 110.04673 * 30.33591 * 14 12 11 38 38 H 1.08003 * 120.05725 * 0.07216 * 19 18 16 39 39 H 1.07993 * 119.95306 * 179.97438 * 20 19 18 40 40 H 1.08004 * 119.73960 * 180.02562 * 21 20 19 41 41 H 1.09005 * 110.30347 * 223.93862 * 24 23 22 42 42 H 1.08987 * 110.39141 * 101.81735 * 24 23 22 43 43 H 1.08993 * 110.82956 * 268.08988 * 25 24 23 44 44 H 1.09007 * 110.82466 * 144.52723 * 25 24 23 45 45 H 1.09000 * 110.30239 * 78.25454 * 26 22 21 46 46 H 1.09004 * 110.29961 * 316.20084 * 26 22 21 47 47 H 1.09003 * 110.56589 * 93.91580 * 27 15 14 48 48 H 1.09005 * 110.56632 * 216.76865 * 27 15 14 49 49 H 1.09001 * 108.11168 * 304.64129 * 30 9 7 50 50 H 1.09000 * 108.11872 * 61.30596 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0133 -1.2464 -0.3984 9 7 1.4231 -2.3319 0.5034 10 6 0.4101 -2.1340 1.5124 11 6 -0.0490 -3.4285 2.1533 12 6 -0.1770 -4.5531 1.1252 13 1 -0.9692 -4.3665 0.4001 14 6 -0.3940 -5.8656 1.9286 15 7 0.9437 -6.4135 2.2160 16 6 1.2007 -7.5388 2.9117 17 8 0.2850 -8.2494 3.2780 18 6 2.5964 -7.9091 3.2293 19 6 3.5364 -6.9167 3.5356 20 6 4.8367 -7.2706 3.8302 21 6 5.2113 -8.6014 3.8238 22 6 4.2889 -9.5912 3.5221 23 6 2.9823 -9.2524 3.2247 24 6 2.1806 -10.5027 2.9327 25 6 3.2307 -11.5996 2.6559 26 6 4.4535 -11.0945 3.4504 27 6 1.9570 -5.5169 1.6180 28 6 1.1942 -4.8167 0.4730 29 1 1.0703 -5.5218 -0.3489 30 6 1.8840 -3.5867 -0.0316 31 1 -0.4850 0.8400 0.0004 32 1 -0.4500 -1.6449 1.0548 33 1 0.8122 -1.4820 2.2878 34 1 -1.0176 -3.2673 2.6264 35 1 0.6737 -3.7231 2.9143 36 1 -0.9681 -6.5762 1.3339 37 1 -0.9172 -5.6511 2.8604 38 1 3.2432 -5.8772 3.5417 39 1 5.5631 -6.5072 4.0662 40 1 6.2308 -8.8722 4.0558 41 1 1.5509 -10.3520 2.0558 42 1 1.5701 -10.7722 3.7943 43 1 3.4579 -11.6590 1.5916 44 1 2.8929 -12.5640 3.0356 45 1 4.4561 -11.5229 4.4526 46 1 5.3758 -11.3495 2.9283 47 1 2.3044 -4.7888 2.3510 48 1 2.7936 -6.0937 1.2235 49 1 1.7710 -3.5549 -1.1152 50 1 2.9463 -3.6814 0.1934 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088218021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:46 Heat of formation + Delta-G solvation = 18.296414 kcal Electronic energy + Delta-G solvation = -30177.218279 eV Core-core repulsion = 26362.358332 eV Total energy + Delta-G solvation = -3814.859947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.84750 -39.78287 -38.11567 -35.93898 -35.56064 -32.75575 -31.84170 -31.38258 -30.22288 -29.24774 -28.17288 -27.26743 -25.68931 -24.25667 -22.97181 -22.15607 -21.68754 -21.24094 -20.99763 -19.25085 -17.83967 -17.20126 -16.88212 -16.28929 -16.08038 -15.81307 -15.36811 -15.09751 -14.88025 -14.32318 -14.14892 -13.91052 -13.69759 -13.38327 -13.20420 -13.08901 -13.02819 -12.87470 -12.73056 -12.34522 -12.25896 -11.99684 -11.80143 -11.46281 -11.41701 -11.34812 -11.27244 -11.11545 -11.10392 -10.76442 -10.50396 -10.27428 -10.24721 -9.94721 -9.74297 -9.64235 -9.57768 -8.99573 -8.71876 -8.51531 -8.48484 -6.63743 -5.64997 -3.28415 0.80836 1.16175 2.77384 3.01593 3.37683 3.44132 3.46216 3.61034 4.13519 4.31636 4.44052 4.49544 4.73059 4.76390 4.80936 4.84182 4.91034 4.98446 5.09398 5.26491 5.28183 5.31190 5.38394 5.44809 5.52119 5.52854 5.56348 5.60711 5.66957 5.70050 5.81607 5.84561 5.88297 5.91761 5.98382 6.03875 6.12459 6.15285 6.20043 6.25534 6.35101 6.39922 6.51165 6.57403 6.64159 6.71574 6.78090 6.84885 7.28120 7.56769 7.80104 7.90175 8.18269 8.51061 9.27079 9.97004 10.26659 11.21820 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019656 B = 0.002754 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.180162 B =10165.388813 C =11038.651456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.007 3.993 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.270 4.270 8 H 0.065 0.935 9 N -0.585 5.585 10 C 0.156 3.844 11 C -0.123 4.123 12 C -0.081 4.081 13 H 0.100 0.900 14 C 0.110 3.890 15 N -0.611 5.611 16 C 0.572 3.428 17 O -0.541 6.541 18 C -0.115 4.115 19 C -0.087 4.087 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.110 4.110 23 C -0.042 4.042 24 C -0.080 4.080 25 C -0.122 4.122 26 C -0.080 4.080 27 C 0.106 3.894 28 C -0.098 4.098 29 H 0.074 0.926 30 C 0.177 3.823 31 H 0.254 0.746 32 H 0.080 0.920 33 H 0.019 0.981 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.024 0.976 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.170 -19.668 6.443 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.400 4.400 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.032 3.968 11 C -0.161 4.161 12 C -0.100 4.100 13 H 0.118 0.882 14 C -0.013 4.013 15 N -0.344 5.344 16 C 0.361 3.639 17 O -0.420 6.420 18 C -0.117 4.117 19 C -0.106 4.106 20 C -0.143 4.143 21 C -0.105 4.105 22 C -0.110 4.110 23 C -0.043 4.043 24 C -0.117 4.117 25 C -0.159 4.159 26 C -0.117 4.117 27 C -0.016 4.016 28 C -0.118 4.118 29 H 0.092 0.908 30 C 0.050 3.950 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.042 0.958 50 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 6.527 -20.054 6.701 22.129 hybrid contribution 0.517 1.141 0.079 1.255 sum 7.044 -18.914 6.781 21.291 Atomic orbital electron populations 1.70001 1.05492 1.25539 1.52164 1.24951 0.94946 0.98508 1.00904 0.86431 0.79184 0.83429 0.78177 1.20833 1.21705 1.21117 1.19078 0.96384 0.86665 1.37865 0.91687 1.42681 1.44977 1.00879 1.42442 1.20241 0.94687 0.91887 0.90034 1.21683 1.00504 0.96667 0.97202 1.22079 0.97556 0.92994 0.97338 0.88210 1.22438 0.83820 0.95169 0.99825 1.48627 1.08945 1.23618 1.53200 1.17989 0.88526 0.79613 0.77753 1.90753 1.46437 1.50981 1.53804 1.19592 0.93449 0.92980 1.05728 1.21597 0.92704 0.99167 0.97085 1.21008 0.96121 0.96062 1.01115 1.20788 0.99052 0.92134 0.98530 1.20620 0.93704 0.95802 1.00848 1.20579 0.94876 0.92805 0.96064 1.21054 0.97196 0.90657 1.02801 1.22340 0.94708 0.98346 1.00553 1.21038 0.99190 0.90412 1.01017 1.22704 0.91343 0.92090 0.95479 1.21654 0.95383 0.98172 0.96556 0.90770 1.19242 0.95310 0.84431 0.95994 0.93620 0.90276 0.96329 0.92309 0.93468 0.91750 0.91301 0.84772 0.85080 0.85894 0.90511 0.89439 0.90902 0.90391 0.90172 0.90630 0.90526 0.90588 0.95763 0.96813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 10.93 55.49 0.61 -24.42 16 2 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 3 Si 0.90 21.28 29.62 -169.99 -5.04 16.25 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.27 -7.21 9.26 -15.06 -0.14 -7.35 16 8 H 0.07 1.72 7.95 -52.49 -0.42 1.30 16 9 N -0.59 -13.99 3.23 -179.70 -0.58 -14.57 16 10 C 0.16 3.58 5.10 -5.91 -0.03 3.55 16 11 C -0.12 -2.19 4.78 -27.50 -0.13 -2.32 16 12 C -0.08 -1.30 3.65 -88.81 -0.32 -1.62 16 13 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.11 1.63 6.25 -2.28 -0.01 1.62 16 15 N -0.61 -9.18 3.34 -170.57 -0.57 -9.75 16 16 C 0.57 9.08 7.43 -12.33 -0.09 8.99 16 17 O -0.54 -9.95 16.46 5.32 0.09 -9.87 16 18 C -0.11 -1.58 5.44 -104.70 -0.57 -2.15 16 19 C -0.09 -1.05 8.21 -39.00 -0.32 -1.37 16 20 C -0.13 -1.27 10.03 -39.68 -0.40 -1.67 16 21 C -0.09 -0.83 10.03 -39.44 -0.40 -1.23 16 22 C -0.11 -1.15 6.14 -104.15 -0.64 -1.79 16 23 C -0.04 -0.53 5.99 -103.73 -0.62 -1.15 16 24 C -0.08 -0.88 5.74 -26.85 -0.15 -1.04 16 25 C -0.12 -0.97 7.08 -25.33 -0.18 -1.15 16 26 C -0.08 -0.62 6.76 -26.85 -0.18 -0.80 16 27 C 0.11 1.52 3.94 -2.54 -0.01 1.51 16 28 C -0.10 -1.58 2.84 -90.92 -0.26 -1.84 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 C 0.18 3.50 5.75 -6.98 -0.04 3.46 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.08 2.08 5.81 -51.92 -0.30 1.77 16 33 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.82 6.60 -51.93 -0.34 0.48 16 36 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 38 H 0.13 1.59 5.79 -52.48 -0.30 1.29 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.99 8.14 -51.94 -0.42 0.57 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 1.14 5.98 -51.93 -0.31 0.83 16 48 H 0.08 1.00 7.29 -51.93 -0.38 0.62 16 49 H 0.02 0.51 8.13 -51.93 -0.42 0.09 16 50 H 0.01 0.27 7.80 -51.93 -0.40 -0.13 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -30.70 381.34 -12.25 -42.94 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.92 Total: -0.07 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -4.58 Total: -6.26 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.54 Total: -48.74 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.04 Total: 16.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.70 -12.25 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088218021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.239 kcal (2) G-P(sol) polarization free energy of solvation -30.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds