Wall clock time and date at job start Wed Apr 1 2020 00:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99959 * 2 1 4 4 C 1.52997 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47277 * 185.00384 * 4 3 2 6 6 N 1.46502 * 109.47434 * 65.00085 * 4 3 2 7 7 C 1.34778 * 119.99747 * 84.99810 * 6 4 3 8 8 O 1.21347 * 120.00067 * 0.02562 * 7 6 4 9 9 C 1.49456 * 119.99495 * 180.02562 * 7 6 4 10 10 O 1.21344 * 120.00044 * 354.95040 * 9 7 6 11 11 N 1.34777 * 119.99699 * 174.94786 * 9 7 6 12 12 C 1.46491 * 120.00308 * 185.06190 * 11 9 7 13 13 C 1.52998 * 109.47684 * 185.00887 * 12 11 9 14 14 C 1.50694 * 115.55392 * 269.61035 * 13 12 11 15 15 H 1.07997 * 120.00062 * 95.24171 * 14 13 12 16 16 C 1.37878 * 120.00104 * 275.24554 * 14 13 12 17 17 N 1.31512 * 119.99742 * 5.14746 * 16 14 13 18 18 Si 1.86797 * 120.00062 * 185.14252 * 16 14 13 19 19 H 1.48502 * 109.47331 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47070 * 120.00117 * 18 16 14 21 21 H 1.48498 * 109.47326 * 240.00011 * 18 16 14 22 22 C 1.53004 * 117.49872 * 123.89852 * 13 12 11 23 23 C 1.53002 * 60.00109 * 252.51547 * 22 13 12 24 24 C 1.53002 * 109.47016 * 305.00211 * 4 3 2 25 25 H 1.08994 * 110.55347 * 61.42365 * 24 4 3 26 26 C 1.55225 * 110.78083 * 184.29023 * 24 4 3 27 27 C 1.54805 * 101.99168 * 155.49812 * 26 24 4 28 28 C 1.54106 * 104.30379 * 339.26597 * 27 26 24 29 29 O 1.43742 * 107.29464 * 357.89886 * 28 27 26 30 30 H 1.09000 * 109.46423 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46863 * 299.99753 * 1 2 3 32 32 H 1.08993 * 109.46899 * 59.99861 * 1 2 3 33 33 H 1.09005 * 109.46930 * 60.00272 * 3 2 1 34 34 H 1.08996 * 109.47398 * 299.99908 * 3 2 1 35 35 H 0.96996 * 120.00002 * 265.00533 * 6 4 3 36 36 H 0.96998 * 120.00105 * 5.06696 * 11 9 7 37 37 H 1.09001 * 109.47461 * 305.01400 * 12 11 9 38 38 H 1.09003 * 109.47059 * 65.00989 * 12 11 9 39 39 H 0.97006 * 119.99945 * 185.00208 * 17 16 14 40 40 H 1.08998 * 117.49700 * 0.02562 * 22 13 12 41 41 H 1.08992 * 117.49898 * 145.02424 * 22 13 12 42 42 H 1.09001 * 117.49654 * 252.51271 * 23 22 13 43 43 H 1.08996 * 117.49719 * 107.48929 * 23 22 13 44 44 H 1.09001 * 110.89067 * 37.36537 * 26 24 4 45 45 H 1.09001 * 111.02378 * 273.69486 * 26 24 4 46 46 H 1.08993 * 110.49140 * 220.51576 * 27 26 24 47 47 H 1.09005 * 110.48618 * 98.00369 * 27 26 24 48 48 H 1.08999 * 109.87645 * 117.32748 * 28 27 26 49 49 H 1.09001 * 109.87410 * 238.47604 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9785 2.1765 0.0890 6 7 3.9758 0.5645 -1.2527 7 6 4.1645 1.3232 -2.3506 8 8 3.9701 2.5200 -2.3018 9 6 4.6131 0.6903 -3.6281 10 8 4.8956 -0.4895 -3.6542 11 7 4.7038 1.4301 -4.7510 12 6 5.0358 0.7890 -6.0257 13 6 5.1976 1.8586 -7.1077 14 6 3.9447 2.2079 -7.8688 15 1 3.3446 3.0520 -7.5626 16 6 3.5646 1.4500 -8.9560 17 7 4.2374 0.3639 -9.2680 18 14 2.0940 1.9657 -9.9858 19 1 1.5139 3.2146 -9.4300 20 1 2.5287 2.2028 -11.3859 21 1 1.0705 0.8901 -9.9609 22 6 6.5225 1.8955 -7.8721 23 6 6.2013 2.9831 -6.8450 24 6 3.9790 0.3194 1.1806 25 1 3.5657 -0.6855 1.0953 26 6 5.5276 0.2648 1.2725 27 6 5.7499 -0.0558 2.7706 28 6 4.4346 0.3713 3.4505 29 8 3.5868 0.9260 2.4308 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 4.1314 -0.3921 -1.2916 36 1 4.5494 2.3870 -4.7152 37 1 5.9680 0.2339 -5.9213 38 1 4.2353 0.1051 -6.3077 39 1 4.0160 -0.1292 -10.0735 40 1 7.2787 1.1576 -7.6043 41 1 6.4881 2.1724 -8.9257 42 1 5.9555 3.9755 -7.2230 43 1 6.7463 2.9608 -5.9013 44 1 5.9666 1.2277 1.0115 45 1 5.9290 -0.5280 0.6413 46 1 6.5873 0.5203 3.1639 47 1 5.9228 -1.1229 2.9108 48 1 3.9524 -0.4956 3.9024 49 1 4.6386 1.1236 4.2125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117600030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:08 Heat of formation + Delta-G solvation = -159.400937 kcal Electronic energy + Delta-G solvation = -30316.180317 eV Core-core repulsion = 26050.472820 eV Total energy + Delta-G solvation = -4265.707497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86809 -40.66966 -39.65308 -38.71352 -38.49463 -36.38122 -34.97839 -33.95140 -32.99388 -31.97007 -29.14521 -28.77570 -27.48860 -27.02561 -25.39056 -24.07552 -23.00325 -22.29413 -21.90950 -21.35160 -21.23153 -19.68964 -18.37888 -18.04080 -17.53873 -17.34742 -17.16911 -17.04011 -16.60284 -16.45109 -16.32002 -16.19158 -15.84338 -15.75555 -15.31613 -15.11215 -14.72516 -14.46860 -14.36617 -13.74504 -13.65091 -13.42141 -13.40452 -13.15502 -13.00103 -12.83811 -12.80784 -12.66900 -12.42111 -12.36852 -12.24711 -12.04593 -11.87757 -11.57218 -11.52748 -10.92344 -10.81550 -10.71772 -10.57060 -10.48543 -10.40788 -10.10355 -10.03235 -8.13061 -6.25593 0.33530 1.21409 1.40386 1.44390 1.53890 2.12328 2.42250 2.48144 2.79137 3.00572 3.16314 3.32384 3.43101 3.55947 3.64079 3.96847 4.00067 4.12834 4.18261 4.18855 4.35398 4.42196 4.48348 4.51851 4.52936 4.55200 4.58219 4.58264 4.71265 4.82590 4.84296 4.87623 4.89641 4.97104 5.00005 5.07644 5.10126 5.20597 5.25631 5.32317 5.58987 5.63654 5.75953 5.88447 5.91850 6.12502 6.35273 6.40275 6.71140 6.81961 6.97214 7.44357 8.95371 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002527 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.510253 B =11076.665692 C =12123.931412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.054 3.946 4 C 0.157 3.843 5 H 0.108 0.892 6 N -0.675 5.675 7 C 0.522 3.478 8 O -0.536 6.536 9 C 0.498 3.502 10 O -0.552 6.552 11 N -0.674 5.674 12 C 0.177 3.823 13 C 0.000 4.000 14 C -0.510 4.510 15 H 0.056 0.944 16 C 0.027 3.973 17 N -0.904 5.904 18 Si 0.947 3.053 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.285 1.285 22 C -0.151 4.151 23 C -0.178 4.178 24 C 0.083 3.917 25 H 0.086 0.914 26 C -0.154 4.154 27 C -0.150 4.150 28 C 0.042 3.958 29 O -0.386 6.386 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.042 0.958 35 H 0.420 0.580 36 H 0.415 0.585 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.261 0.739 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.068 0.932 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -0.728 25.279 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.023 4.023 4 C 0.053 3.947 5 H 0.126 0.874 6 N -0.329 5.329 7 C 0.302 3.698 8 O -0.413 6.413 9 C 0.278 3.722 10 O -0.431 6.431 11 N -0.325 5.325 12 C 0.054 3.946 13 C -0.001 4.001 14 C -0.547 4.547 15 H 0.075 0.925 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.212 1.212 22 C -0.189 4.189 23 C -0.215 4.215 24 C 0.024 3.976 25 H 0.104 0.896 26 C -0.191 4.191 27 C -0.188 4.188 28 C -0.034 4.034 29 O -0.305 6.305 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.257 0.743 36 H 0.251 0.749 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.086 0.914 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.363 -0.905 25.236 25.255 hybrid contribution -0.862 0.102 -1.160 1.449 sum -1.225 -0.803 24.076 24.120 Atomic orbital electron populations 1.22878 0.79725 1.03765 1.00442 1.87800 1.21179 1.27466 1.95534 1.22874 0.92940 0.85419 1.01115 1.21048 0.92993 0.98514 0.82142 0.87387 1.45438 1.66054 1.12743 1.08637 1.19936 0.78321 0.86625 0.84890 1.90750 1.50853 1.14952 1.84697 1.20288 0.79675 0.86697 0.85494 1.90717 1.50046 1.16301 1.86044 1.45939 1.66689 1.12809 1.07063 1.20906 0.98389 0.94861 0.80424 1.19080 0.90516 0.94752 0.95723 1.20747 1.07833 1.12877 1.13273 0.92536 1.25648 0.98860 0.94196 0.98697 1.70111 1.42567 1.16298 1.25121 0.85676 0.79902 0.78259 0.78832 1.19185 1.20552 1.21163 1.22477 0.99218 1.01028 0.96198 1.22980 1.04369 0.94494 0.99666 1.23100 0.94430 0.96235 0.83793 0.89580 1.23259 0.94527 1.03452 0.97902 1.22930 0.98497 1.03374 0.93992 1.23354 0.89796 0.99360 0.90909 1.88817 1.58974 1.66213 1.16465 0.88351 0.92787 0.94436 0.90463 0.93925 0.74269 0.74852 0.93240 0.93835 0.92997 0.90617 0.91645 0.89613 0.89072 0.90773 0.89213 0.89309 0.89351 0.91415 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.40 -8.96 9.83 -148.98 -1.46 -10.42 16 3 C 0.05 1.19 5.56 71.98 0.40 1.59 16 4 C 0.16 3.34 2.16 44.99 0.10 3.44 16 5 H 0.11 2.42 7.58 -2.39 -0.02 2.40 16 6 N -0.67 -16.36 4.78 -443.86 -2.12 -18.48 16 7 C 0.52 16.00 7.85 87.27 0.69 16.68 16 8 O -0.54 -17.99 16.15 -3.24 -0.05 -18.05 16 9 C 0.50 17.98 7.88 87.27 0.69 18.67 16 10 O -0.55 -21.95 16.47 -3.23 -0.05 -22.00 16 11 N -0.67 -25.92 5.40 -464.43 -2.51 -28.42 16 12 C 0.18 7.96 5.71 86.38 0.49 8.45 16 13 C 0.00 0.01 1.46 -52.93 -0.08 -0.07 16 14 C -0.51 -26.67 8.77 25.60 0.22 -26.44 16 15 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 16 C 0.03 1.44 5.40 84.66 0.46 1.90 16 17 N -0.90 -50.43 12.91 21.45 0.28 -50.16 16 18 Si 0.95 42.62 29.54 68.60 2.03 44.64 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 22 C -0.15 -6.73 9.38 30.60 0.29 -6.44 16 23 C -0.18 -7.03 9.50 30.60 0.29 -6.73 16 24 C 0.08 1.44 2.65 31.36 0.08 1.53 16 25 H 0.09 1.54 7.66 -2.39 -0.02 1.52 16 26 C -0.15 -2.22 6.39 31.97 0.20 -2.02 16 27 C -0.15 -1.58 7.00 31.58 0.22 -1.36 16 28 C 0.04 0.51 7.70 72.36 0.56 1.07 16 29 O -0.39 -7.09 10.78 -148.98 -1.61 -8.70 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.53 7.92 -2.38 -0.02 1.51 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.42 9.55 8.08 -92.71 -0.75 8.80 16 36 H 0.41 15.23 7.70 -92.71 -0.71 14.51 16 37 H 0.05 2.21 7.83 -2.39 -0.02 2.19 16 38 H 0.04 2.24 8.04 -2.39 -0.02 2.22 16 39 H 0.26 13.95 8.32 -92.70 -0.77 13.18 16 40 H 0.08 3.17 8.03 -2.39 -0.02 3.15 16 41 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 45 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -62.97 410.34 -0.14 -63.11 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.50 Total: 36.47 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.86 Total: 11.99 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -4.35 Total: -97.06 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -3.18 Total: -59.16 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -62.97 -0.14 -63.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117600030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.291 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds