Wall clock time and date at job start Wed Apr 1 2020 00:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00076 * 2 1 4 4 C 1.53000 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46751 * 175.00010 * 4 3 2 6 6 N 1.46490 * 109.47760 * 295.00009 * 4 3 2 7 7 C 1.34774 * 120.00282 * 275.00708 * 6 4 3 8 8 O 1.21354 * 119.99932 * 359.97438 * 7 6 4 9 9 C 1.49453 * 120.00375 * 179.97438 * 7 6 4 10 10 O 1.21348 * 119.99756 * 5.21446 * 9 7 6 11 11 N 1.34781 * 120.00172 * 185.21423 * 9 7 6 12 12 C 1.46498 * 119.99920 * 184.86776 * 11 9 7 13 13 C 1.52997 * 109.46903 * 185.93764 * 12 11 9 14 14 C 1.50700 * 115.54817 * 34.07457 * 13 12 11 15 15 H 1.08003 * 119.99962 * 271.22728 * 14 13 12 16 16 C 1.37876 * 120.00152 * 91.23517 * 14 13 12 17 17 N 1.31519 * 119.99797 * 172.30580 * 16 14 13 18 18 Si 1.86795 * 120.00108 * 352.31017 * 16 14 13 19 19 H 1.48500 * 109.47403 * 93.73326 * 18 16 14 20 20 H 1.48503 * 109.47007 * 213.72872 * 18 16 14 21 21 H 1.48498 * 109.47014 * 333.73213 * 18 16 14 22 22 C 1.53001 * 117.50074 * 248.35861 * 13 12 11 23 23 C 1.52996 * 60.00066 * 252.51476 * 22 13 12 24 24 C 1.53005 * 109.47168 * 55.00539 * 4 3 2 25 25 H 1.09002 * 110.27709 * 65.63268 * 24 4 3 26 26 C 1.54947 * 110.30923 * 187.82855 * 24 4 3 27 27 C 1.55304 * 100.93742 * 155.35607 * 26 24 4 28 28 C 1.54382 * 102.25737 * 325.86710 * 27 26 24 29 29 O 1.43236 * 107.58866 * 21.35749 * 28 27 26 30 30 H 1.08994 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46963 * 299.99817 * 1 2 3 32 32 H 1.09002 * 109.46786 * 59.99961 * 1 2 3 33 33 H 1.08997 * 109.46816 * 60.00343 * 3 2 1 34 34 H 1.08994 * 109.47100 * 300.00108 * 3 2 1 35 35 H 0.97001 * 120.00208 * 94.99855 * 6 4 3 36 36 H 0.97003 * 119.99812 * 4.87053 * 11 9 7 37 37 H 1.09000 * 109.46945 * 65.94120 * 12 11 9 38 38 H 1.09002 * 109.47256 * 305.94245 * 12 11 9 39 39 H 0.97003 * 120.00020 * 180.02562 * 17 16 14 40 40 H 1.08999 * 117.49737 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.49449 * 145.01773 * 22 13 12 42 42 H 1.09007 * 117.49548 * 252.50626 * 23 22 13 43 43 H 1.08995 * 117.49742 * 107.49312 * 23 22 13 44 44 H 1.08999 * 111.12712 * 273.27726 * 26 24 4 45 45 H 1.09005 * 111.12449 * 37.44440 * 26 24 4 46 46 H 1.09006 * 110.84533 * 207.67933 * 27 26 24 47 47 H 1.08995 * 111.02157 * 84.14022 * 27 26 24 48 48 H 1.08999 * 109.82983 * 261.84553 * 28 27 26 49 49 H 1.08997 * 109.83101 * 140.86836 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.9786 2.1764 -0.0889 6 7 3.9758 0.5643 1.2526 7 6 4.1645 1.3228 2.3505 8 8 3.9702 2.5197 2.3019 9 6 4.6132 0.6900 3.6280 10 8 4.8986 -0.4892 3.6534 11 7 4.7008 1.4290 4.7517 12 6 5.2413 0.8365 5.9777 13 6 5.0944 1.8299 7.1320 14 6 3.8675 2.7037 7.0852 15 1 3.8964 3.6477 6.5612 16 6 2.7080 2.2983 7.7115 17 7 1.6867 3.1220 7.8017 18 14 2.5878 0.5790 8.4320 19 1 2.9623 0.6169 9.8685 20 1 1.1950 0.0819 8.2965 21 1 3.5104 -0.3285 7.7037 22 6 6.3746 2.4391 7.7071 23 6 5.5982 1.3926 8.5088 24 6 3.9790 0.3193 -1.1808 25 1 3.7462 0.8172 -2.1220 26 6 5.4967 0.0207 -1.0888 27 6 5.5877 -1.2973 -1.9052 28 6 4.2445 -1.9821 -1.5729 29 8 3.3398 -0.9659 -1.1251 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8463 -0.8899 35 1 4.1314 -0.3924 1.2915 36 1 4.4059 2.3531 4.7487 37 1 6.2957 0.6009 5.8331 38 1 4.6938 -0.0765 6.2121 39 1 0.8711 2.8369 8.2427 40 1 7.3216 2.1323 7.2629 41 1 6.3297 3.4722 8.0516 42 1 5.0424 1.7373 9.3810 43 1 6.0343 0.3972 8.5924 44 1 6.0820 0.8131 -1.5554 45 1 5.8044 -0.1357 -0.0548 46 1 6.4270 -1.9054 -1.5677 47 1 5.6645 -1.0915 -2.9728 48 1 4.3910 -2.7203 -0.7844 49 1 3.8455 -2.4657 -2.4644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117600033.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:17 Heat of formation + Delta-G solvation = -128.032093 kcal Electronic energy + Delta-G solvation = -31070.792720 eV Core-core repulsion = 26806.445479 eV Total energy + Delta-G solvation = -4264.347241 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61734 -39.56632 -38.24117 -37.54226 -37.00684 -35.03490 -33.42270 -32.23306 -32.17551 -30.97583 -28.29468 -27.27947 -26.16077 -25.53331 -24.00990 -23.00005 -21.80019 -21.71592 -20.57839 -20.00059 -19.45390 -18.06889 -17.23700 -16.62495 -16.36527 -16.22697 -15.95113 -15.74822 -15.34125 -15.18357 -15.04116 -15.01902 -14.57434 -14.04685 -13.91759 -13.61942 -13.52721 -13.04019 -12.90562 -12.79596 -12.56943 -12.45816 -12.37151 -12.20621 -11.91229 -11.52634 -11.42328 -11.27768 -11.15395 -11.12154 -10.90115 -10.69751 -10.52691 -10.20381 -9.72913 -9.67635 -9.58953 -9.30416 -9.14753 -9.07605 -8.72059 -8.64539 -8.28244 -6.19968 -4.24920 1.82834 2.69008 3.26238 3.37126 3.41458 3.54562 3.62681 3.83834 4.06594 4.17229 4.36958 4.37058 4.63341 4.79279 4.86982 4.93376 4.97748 5.00462 5.12566 5.15617 5.20947 5.36419 5.39198 5.42814 5.47206 5.50948 5.59205 5.62160 5.67409 5.69587 5.71650 5.89066 5.94633 6.05159 6.18325 6.33151 6.41287 6.43874 6.67655 6.81414 6.89169 7.00264 7.07067 7.19561 7.34076 7.64560 7.90241 8.20275 8.36596 8.57178 8.81519 9.43424 10.90696 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.003119 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.232845 B = 8973.747841 C = 9814.263948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.359 6.359 3 C 0.048 3.952 4 C 0.150 3.850 5 H 0.116 0.884 6 N -0.690 5.690 7 C 0.509 3.491 8 O -0.519 6.519 9 C 0.496 3.504 10 O -0.544 6.544 11 N -0.659 5.659 12 C 0.147 3.853 13 C -0.017 4.017 14 C -0.498 4.498 15 H 0.081 0.919 16 C 0.085 3.915 17 N -0.888 5.888 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.256 1.256 22 C -0.178 4.178 23 C -0.193 4.193 24 C 0.077 3.923 25 H 0.084 0.916 26 C -0.157 4.157 27 C -0.155 4.155 28 C 0.045 3.955 29 O -0.344 6.344 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.417 0.583 36 H 0.422 0.578 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.266 0.734 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -6.973 -19.911 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C -0.030 4.030 4 C 0.045 3.955 5 H 0.134 0.866 6 N -0.344 5.344 7 C 0.291 3.709 8 O -0.394 6.394 9 C 0.275 3.725 10 O -0.424 6.424 11 N -0.311 5.311 12 C 0.024 3.976 13 C -0.018 4.018 14 C -0.535 4.535 15 H 0.099 0.901 16 C -0.119 4.119 17 N -0.524 5.524 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.180 1.180 22 C -0.215 4.215 23 C -0.231 4.231 24 C 0.019 3.981 25 H 0.101 0.899 26 C -0.194 4.194 27 C -0.193 4.193 28 C -0.032 4.032 29 O -0.263 6.263 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.262 0.738 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.087 0.913 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.719 -7.084 -19.765 21.520 hybrid contribution -0.369 -0.647 0.452 0.872 sum 4.349 -7.731 -19.312 21.252 Atomic orbital electron populations 1.22700 0.81991 1.02413 0.99457 1.88101 1.18495 1.25872 1.95187 1.22879 0.93023 0.86156 1.00915 1.21320 0.93341 0.97728 0.83112 0.86643 1.45631 1.67073 1.12786 1.08958 1.20434 0.78243 0.87004 0.85269 1.90765 1.49536 1.14473 1.84578 1.19938 0.80515 0.86794 0.85217 1.90701 1.50643 1.15124 1.85888 1.45848 1.59634 1.17172 1.08446 1.21250 0.96359 0.96603 0.83409 1.19580 0.95288 0.97186 0.89772 1.20141 0.92516 1.05038 1.35819 0.90095 1.24964 0.95392 0.96903 0.94644 1.69910 1.04690 1.35283 1.42483 0.86906 0.77225 0.85619 0.79823 1.20372 1.22013 1.18006 1.22932 0.94955 0.98097 1.05497 1.22936 1.05233 0.97970 0.96954 1.23177 0.91512 0.86602 0.96816 0.89878 1.23372 0.95973 0.97902 1.02184 1.23109 0.98594 0.96850 1.00712 1.23160 0.88899 0.91807 0.99360 1.88734 1.36447 1.14070 1.87025 0.89896 0.94398 0.94648 0.92377 0.92611 0.74604 0.73765 0.92990 0.91242 0.92409 0.90805 0.89300 0.89120 0.90695 0.89747 0.89565 0.90046 0.90712 0.91280 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.36 -4.76 8.31 -58.22 -0.48 -5.24 16 3 C 0.05 0.59 5.74 37.16 0.21 0.80 16 4 C 0.15 1.71 2.44 -67.93 -0.17 1.54 16 5 H 0.12 1.24 7.58 -51.92 -0.39 0.85 16 6 N -0.69 -9.56 3.98 -54.24 -0.22 -9.77 16 7 C 0.51 8.70 7.85 -11.58 -0.09 8.61 16 8 O -0.52 -9.74 16.16 5.49 0.09 -9.65 16 9 C 0.50 9.56 7.88 -11.58 -0.09 9.47 16 10 O -0.54 -11.13 16.45 5.50 0.09 -11.03 16 11 N -0.66 -13.49 5.26 -60.73 -0.32 -13.81 16 12 C 0.15 3.06 5.64 -4.04 -0.02 3.04 16 13 C -0.02 -0.37 1.24 -155.66 -0.19 -0.57 16 14 C -0.50 -13.03 7.87 -34.44 -0.27 -13.30 16 15 H 0.08 2.30 8.01 -52.48 -0.42 1.88 16 16 C 0.09 2.35 5.46 -17.82 -0.10 2.25 16 17 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 18 Si 0.88 21.36 25.18 -169.99 -4.28 17.07 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.26 -5.99 5.33 56.52 0.30 -5.69 16 22 C -0.18 -3.42 9.88 -26.73 -0.26 -3.69 16 23 C -0.19 -3.93 7.66 -26.73 -0.20 -4.14 16 24 C 0.08 0.72 3.24 -25.70 -0.08 0.64 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 C -0.16 -1.27 6.45 -24.48 -0.16 -1.43 16 27 C -0.16 -1.08 7.02 -24.79 -0.17 -1.25 16 28 C 0.04 0.39 7.79 37.88 0.30 0.68 16 29 O -0.34 -3.84 8.45 -58.22 -0.49 -4.33 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.42 5.81 7.40 -40.82 -0.30 5.51 16 36 H 0.42 9.02 6.82 -40.82 -0.28 8.74 16 37 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 38 H 0.07 1.54 6.34 -51.93 -0.33 1.22 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 41 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 42 H 0.09 1.95 7.21 -51.93 -0.37 1.58 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.83 6.77 -51.93 -0.35 0.48 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -31.24 394.72 -7.09 -38.34 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -8.01 Total: 13.73 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.20 Total: 4.11 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.24 Total: -48.94 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.80 Total: -30.26 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.28 Total: 17.07 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.24 -7.09 -38.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117600033.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.694 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds