Wall clock time and date at job start Wed Apr 1 2020 00:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99749 * 2 1 4 4 H 1.09002 * 109.46719 * 329.99499 * 3 2 1 5 5 C 1.52994 * 109.47261 * 90.00065 * 3 2 1 6 6 C 1.52999 * 109.47024 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47278 * 299.99839 * 6 5 3 8 8 C 1.53003 * 109.47127 * 60.00039 * 7 6 5 9 9 C 1.52999 * 109.47010 * 300.00125 * 8 7 6 10 10 H 1.09000 * 109.47519 * 299.99838 * 9 8 7 11 11 N 1.46498 * 109.47257 * 179.97438 * 9 8 7 12 12 C 1.34783 * 119.99907 * 84.99606 * 11 9 8 13 13 O 1.21343 * 119.99770 * 0.02562 * 12 11 9 14 14 C 1.49444 * 119.99829 * 180.02562 * 12 11 9 15 15 O 1.21353 * 120.00395 * 0.02562 * 14 12 11 16 16 N 1.34777 * 119.99750 * 179.72509 * 14 12 11 17 17 C 1.47023 * 125.65037 * 0.30544 * 16 14 12 18 18 C 1.54316 * 107.27276 * 181.01937 * 17 16 14 19 19 C 1.55156 * 102.94559 * 22.19474 * 18 17 16 20 20 O 1.42895 * 111.00754 * 82.56871 * 19 18 17 21 21 C 1.50700 * 111.00806 * 206.38857 * 19 18 17 22 22 H 1.08004 * 119.99929 * 359.97438 * 21 19 18 23 23 C 1.37872 * 120.00171 * 179.97438 * 21 19 18 24 24 N 1.31513 * 119.99920 * 359.97438 * 23 21 19 25 25 Si 1.86805 * 119.99814 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47223 * 60.00635 * 25 23 21 27 27 H 1.48505 * 109.46880 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47169 * 300.00122 * 25 23 21 29 29 C 1.47427 * 125.64685 * 179.97438 * 16 14 12 30 30 H 1.08999 * 109.47749 * 60.00482 * 1 2 3 31 31 H 1.09005 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47659 * 299.99910 * 1 2 3 33 33 H 1.09002 * 109.46702 * 299.99675 * 5 3 2 34 34 H 1.09000 * 109.46998 * 59.99461 * 5 3 2 35 35 H 1.09003 * 109.46809 * 60.00140 * 6 5 3 36 36 H 1.09003 * 109.47054 * 179.97438 * 6 5 3 37 37 H 1.08996 * 109.47253 * 180.02562 * 7 6 5 38 38 H 1.09000 * 109.46951 * 300.00477 * 7 6 5 39 39 H 1.08996 * 109.47248 * 179.97438 * 8 7 6 40 40 H 1.09003 * 109.47062 * 59.99637 * 8 7 6 41 41 H 0.97000 * 120.00381 * 264.99880 * 11 9 8 42 42 H 1.08997 * 109.88157 * 300.44099 * 17 16 14 43 43 H 1.09001 * 109.87827 * 61.44913 * 17 16 14 44 44 H 1.09004 * 110.71946 * 140.55644 * 18 17 16 45 45 H 1.09001 * 110.72591 * 263.82662 * 18 17 16 46 46 H 0.96695 * 114.00255 * 180.02562 * 20 19 18 47 47 H 0.97003 * 119.99817 * 179.97438 * 24 23 21 48 48 H 1.09001 * 110.36625 * 274.74765 * 29 16 14 49 49 H 1.08998 * 110.36643 * 37.07451 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7714 1.4424 6 6 2.8405 3.1689 1.4424 7 6 4.1892 3.1262 0.7213 8 6 3.9818 2.6602 -0.7212 9 6 3.3590 1.2627 -0.7211 10 1 4.0238 0.5685 -0.2072 11 7 3.1598 0.8167 -2.1023 12 6 4.1693 0.2259 -2.7719 13 8 5.2430 0.0630 -2.2305 14 6 3.9663 -0.2285 -4.1810 15 8 2.8927 -0.0651 -4.7226 16 7 4.9775 -0.8143 -4.8524 17 6 6.3234 -1.0727 -4.3201 18 6 7.1437 -1.7321 -5.4486 19 6 6.3872 -1.2932 -6.7302 20 8 6.7837 0.0185 -7.1353 21 6 6.5933 -2.2854 -7.8457 22 1 7.2051 -3.1605 -7.6838 23 6 6.0008 -2.0759 -9.0728 24 7 5.2553 -1.0105 -9.2698 25 14 6.2569 -3.3054 -10.4557 26 1 5.7497 -4.6362 -10.0351 27 1 5.5196 -2.8532 -11.6629 28 1 7.7051 -3.4038 -10.7687 29 6 4.9152 -1.3082 -6.2401 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.2568 1.8015 1.9562 34 1 2.8829 1.0775 1.9563 35 1 2.1755 3.8630 0.9284 36 1 2.9878 3.5011 2.4700 37 1 4.6331 4.1216 0.7217 38 1 4.8541 2.4320 1.2353 39 1 4.9426 2.6302 -1.2350 40 1 3.3168 3.3543 -1.2352 41 1 2.3014 0.9467 -2.5350 42 1 6.7906 -0.1342 -4.0219 43 1 6.2606 -1.7440 -3.4636 44 1 8.1655 -1.3525 -5.4550 45 1 7.1351 -2.8174 -5.3483 46 1 6.3371 0.3359 -7.9320 47 1 4.8388 -0.8629 -10.1333 48 1 4.5149 -2.3218 -6.2644 49 1 4.3053 -0.6438 -6.8522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118220638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:20 Heat of formation + Delta-G solvation = -172.014483 kcal Electronic energy + Delta-G solvation = -31056.113150 eV Core-core repulsion = 26789.858689 eV Total energy + Delta-G solvation = -4266.254461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.60091 -39.52001 -38.16803 -37.13001 -36.67335 -34.64589 -33.90409 -32.16101 -30.50574 -30.19331 -29.63597 -27.90866 -26.71789 -25.83016 -24.09901 -22.81707 -22.50433 -21.30926 -20.53449 -19.70121 -19.30817 -17.51448 -17.19292 -16.83109 -16.67923 -15.98735 -15.63651 -15.44342 -15.21616 -15.03475 -14.59397 -14.47287 -14.16854 -14.04014 -13.88703 -13.57164 -13.14807 -13.00190 -12.98801 -12.83887 -12.56778 -12.24469 -12.05103 -11.64709 -11.57974 -11.49375 -11.45244 -11.18595 -11.04802 -11.03609 -10.98719 -10.76138 -10.66139 -10.52862 -10.50011 -10.18976 -9.88511 -9.39473 -9.15662 -9.05550 -8.68203 -8.41070 -7.85679 -6.30604 -4.39965 1.86503 2.67361 3.21811 3.27326 3.29441 3.35371 3.66395 3.90204 4.25374 4.28771 4.50965 4.59482 4.74901 4.76037 4.83530 4.86848 4.97125 5.03840 5.07955 5.12077 5.13047 5.37553 5.45103 5.52544 5.54658 5.61753 5.67481 5.75606 5.80747 5.83188 5.89643 5.96534 6.04293 6.08272 6.29124 6.41350 6.53385 6.75169 6.81657 6.86591 6.88438 7.18736 7.29746 7.33850 7.72865 7.92187 8.00152 8.10334 8.49698 8.63642 9.29795 9.45613 10.76725 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022830 B = 0.002517 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.176170 B =11122.251187 C =11681.628477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.082 3.918 4 H 0.067 0.933 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.151 3.849 10 H 0.098 0.902 11 N -0.698 5.698 12 C 0.514 3.486 13 O -0.517 6.517 14 C 0.508 3.492 15 O -0.540 6.540 16 N -0.573 5.573 17 C 0.112 3.888 18 C -0.122 4.122 19 C 0.250 3.750 20 O -0.582 6.582 21 C -0.537 4.537 22 H 0.068 0.932 23 C 0.070 3.930 24 N -0.896 5.896 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.090 3.910 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.410 0.590 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.386 0.614 47 H 0.272 0.728 48 H 0.067 0.933 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 7.016 19.901 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.024 3.976 4 H 0.085 0.915 5 C -0.175 4.175 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.169 4.169 9 C 0.046 3.954 10 H 0.116 0.884 11 N -0.351 5.351 12 C 0.295 3.705 13 O -0.392 6.392 14 C 0.290 3.710 15 O -0.419 6.419 16 N -0.305 5.305 17 C -0.010 4.010 18 C -0.160 4.160 19 C 0.209 3.791 20 O -0.392 6.392 21 C -0.575 4.575 22 H 0.086 0.914 23 C -0.133 4.133 24 N -0.535 5.535 25 Si 0.733 3.267 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.200 1.200 29 C -0.031 4.031 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.245 0.755 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.238 0.762 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.833 6.874 20.413 22.597 hybrid contribution -1.059 -0.314 -1.439 1.814 sum -7.892 6.560 18.974 21.572 Atomic orbital electron populations 1.22819 0.80952 1.03008 0.99881 1.87994 1.19682 1.26954 1.94991 1.22422 0.94131 0.85236 0.95841 0.91497 1.21996 1.01859 0.97485 0.96173 1.21545 0.96897 0.96256 1.00977 1.21529 0.97259 1.01857 0.94998 1.21952 1.02154 0.95196 0.97563 1.21106 0.96013 0.96716 0.81554 0.88360 1.45645 1.15677 1.59988 1.13769 1.20364 0.84334 0.78231 0.87541 1.90714 1.25003 1.54331 1.69149 1.19590 0.84391 0.80544 0.86461 1.90713 1.25142 1.56758 1.69291 1.48621 1.11520 1.54541 1.15816 1.22134 0.81932 1.00540 0.96435 1.22721 0.99219 0.99894 0.94171 1.19631 0.86551 0.82519 0.90399 1.86084 1.69756 1.33388 1.50008 1.21472 1.31711 1.08265 0.96050 0.91369 1.25093 0.93622 0.95676 0.98879 1.69557 1.31988 1.26990 1.25006 0.86421 0.78513 0.81081 0.80664 1.19987 1.21076 1.19951 1.23553 1.03009 0.98725 0.77831 0.93819 0.89484 0.94150 0.91320 0.90611 0.91751 0.91317 0.91231 0.91326 0.90305 0.91384 0.75478 0.91187 0.91765 0.90513 0.90439 0.76228 0.91792 0.91455 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -4.13 10.21 -35.23 -0.36 -4.49 16 3 C 0.08 0.76 2.13 -26.73 -0.06 0.70 16 4 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 5 C -0.14 -1.00 5.54 -26.73 -0.15 -1.15 16 6 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 7 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 8 C -0.13 -1.28 5.49 -26.73 -0.15 -1.42 16 9 C 0.15 1.71 2.15 -67.93 -0.15 1.56 16 10 H 0.10 1.28 7.58 -51.93 -0.39 0.89 16 11 N -0.70 -9.72 4.94 -54.24 -0.27 -9.99 16 12 C 0.51 9.02 7.82 -11.58 -0.09 8.93 16 13 O -0.52 -9.61 13.78 5.50 0.08 -9.54 16 14 C 0.51 10.51 7.91 -11.59 -0.09 10.41 16 15 O -0.54 -12.07 16.73 5.49 0.09 -11.97 16 16 N -0.57 -12.42 3.32 -170.88 -0.57 -12.99 16 17 C 0.11 2.22 5.49 -3.07 -0.02 2.20 16 18 C -0.12 -2.53 6.12 -24.90 -0.15 -2.68 16 19 C 0.25 6.11 0.89 -89.49 -0.08 6.03 16 20 O -0.58 -15.09 13.19 -35.23 -0.46 -15.56 16 21 C -0.54 -13.89 8.25 -34.44 -0.28 -14.17 16 22 H 0.07 1.72 7.76 -52.48 -0.41 1.31 16 23 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 24 N -0.90 -23.66 10.72 55.43 0.59 -23.07 16 25 Si 0.91 20.20 29.54 -169.99 -5.02 15.18 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 C 0.09 2.16 5.64 -2.40 -0.01 2.15 16 30 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 33 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.41 5.41 8.07 -40.82 -0.33 5.08 16 42 H 0.07 1.40 7.57 -51.93 -0.39 1.00 16 43 H 0.06 1.18 7.69 -51.93 -0.40 0.78 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 45 H 0.08 1.49 8.01 -51.93 -0.42 1.08 16 46 H 0.39 10.26 6.93 45.56 0.32 10.58 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 48 H 0.07 1.63 8.04 -51.93 -0.42 1.22 16 49 H 0.09 2.28 7.64 -51.93 -0.40 1.89 16 LS Contribution 391.66 15.07 5.90 5.90 Total: -1.00 -29.66 391.66 -7.98 -37.64 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -7.42 Total: 15.23 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -0.54 Total: 13.66 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.24 Total: -46.05 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.66 Total: -41.56 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.66 -7.98 -37.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118220638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.375 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds