Wall clock time and date at job start Tue Mar 31 2020 23:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47047 * 2 1 4 4 C 1.42898 * 114.00112 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.43421 * 27.45515 * 4 3 2 6 6 C 1.54892 * 110.48982 * 264.77533 * 4 3 2 7 7 C 1.54887 * 102.75130 * 203.37792 * 6 4 3 8 8 C 1.54264 * 104.19460 * 37.94043 * 7 6 4 9 9 C 1.53869 * 106.60055 * 336.39133 * 8 7 6 10 10 H 1.09005 * 110.07558 * 119.30636 * 9 8 7 11 11 N 1.46498 * 110.03216 * 240.71362 * 9 8 7 12 12 C 1.34776 * 120.00277 * 272.16401 * 11 9 8 13 13 O 1.21343 * 119.99889 * 0.02562 * 12 11 9 14 14 C 1.49452 * 120.00150 * 179.97438 * 12 11 9 15 15 O 1.21350 * 119.99691 * 0.02562 * 14 12 11 16 16 N 1.34772 * 120.00102 * 180.02562 * 14 12 11 17 17 C 1.47424 * 125.64704 * 359.97016 * 16 14 12 18 18 C 1.54911 * 104.83038 * 155.91374 * 17 16 14 19 19 C 1.55150 * 101.58256 * 37.01045 * 18 17 16 20 20 O 1.42901 * 110.72399 * 83.04169 * 19 18 17 21 21 C 1.50702 * 110.71913 * 206.13427 * 19 18 17 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 19 18 23 23 C 1.37884 * 119.99942 * 179.72043 * 21 19 18 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 19 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 19 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 C 1.47023 * 125.65065 * 180.02562 * 16 14 12 30 30 H 1.08998 * 109.47630 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47351 * 300.00248 * 1 2 3 32 32 H 1.09005 * 109.47103 * 59.99914 * 1 2 3 33 33 H 1.08994 * 109.47265 * 239.99617 * 2 1 3 34 34 H 1.08996 * 109.47288 * 119.99513 * 2 1 3 35 35 H 1.09000 * 110.75458 * 321.69270 * 6 4 3 36 36 H 1.09004 * 110.75837 * 84.87627 * 6 4 3 37 37 H 1.09000 * 110.48451 * 156.61799 * 7 6 4 38 38 H 1.08995 * 110.48671 * 279.26197 * 7 6 4 39 39 H 1.08998 * 110.03215 * 217.10133 * 8 7 6 40 40 H 1.09008 * 110.02903 * 95.67810 * 8 7 6 41 41 H 0.97003 * 119.99739 * 92.16627 * 11 9 8 42 42 H 1.08999 * 110.36550 * 37.07530 * 17 16 14 43 43 H 1.09001 * 110.36684 * 274.75076 * 17 16 14 44 44 H 1.09004 * 111.00221 * 278.93334 * 18 17 16 45 45 H 1.08997 * 111.03949 * 155.10264 * 18 17 16 46 46 H 0.96693 * 114.00035 * 182.44272 * 20 19 18 47 47 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.88240 * 61.59571 * 29 16 14 49 49 H 1.09009 * 109.87886 * 300.43743 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8820 0.5866 -0.4700 6 6 3.9602 1.6349 1.4457 7 6 5.3285 2.3270 1.2271 8 6 5.0771 3.3014 0.0579 9 6 3.8706 2.7503 -0.7219 10 1 3.0580 3.4768 -0.7164 11 7 4.2610 2.4451 -2.1006 12 6 4.1943 3.4020 -3.0474 13 8 3.8112 4.5164 -2.7578 14 6 4.5931 3.0909 -4.4537 15 8 4.9766 1.9765 -4.7431 16 7 4.5269 4.0478 -5.4004 17 6 4.0809 5.4369 -5.1881 18 6 4.7495 6.2464 -6.3272 19 6 4.6755 5.2424 -7.5078 20 8 3.3956 5.2995 -8.1408 21 6 5.7736 5.5099 -8.5047 22 1 6.4727 6.3154 -8.3349 23 6 5.8894 4.7223 -9.6305 24 7 5.0383 3.7412 -9.8371 25 14 7.2551 5.0491 -10.8623 26 1 8.0725 6.2000 -10.4015 27 1 8.1168 3.8450 -10.9771 28 1 6.6622 5.3615 -12.1876 29 6 4.8863 3.8792 -6.8160 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.2936 2.2720 2.0269 36 1 4.0869 0.6668 1.9304 37 1 5.6268 2.8736 2.1218 38 1 6.0880 1.5937 0.9560 39 1 5.9532 3.3419 -0.5894 40 1 4.8504 4.2958 0.4427 41 1 4.5675 1.5544 -2.3320 42 1 4.4178 5.7992 -4.2169 43 1 2.9954 5.5024 -5.2628 44 1 5.7843 6.4851 -6.0815 45 1 4.1839 7.1516 -6.5481 46 1 3.2847 4.6647 -8.8617 47 1 5.1197 3.1874 -10.6293 48 1 4.2440 3.1274 -7.2745 49 1 5.9307 3.5784 -6.8999 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118225895.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:46 Heat of formation + Delta-G solvation = -167.260875 kcal Electronic energy + Delta-G solvation = -30661.772386 eV Core-core repulsion = 26395.724057 eV Total energy + Delta-G solvation = -4266.048329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.59650 -39.44919 -38.23926 -37.21241 -36.62989 -34.49871 -33.56182 -32.19137 -31.50728 -30.15431 -28.41969 -27.94889 -27.67598 -25.71713 -23.75739 -23.10399 -22.03708 -21.41485 -20.35698 -19.80094 -19.41626 -17.57910 -17.32206 -17.17216 -16.55256 -16.04223 -15.89872 -15.65630 -15.25968 -14.96439 -14.75804 -14.45748 -14.06487 -13.81895 -13.64984 -13.33276 -13.03389 -13.00633 -12.94246 -12.85335 -12.37351 -12.34349 -12.13040 -11.77453 -11.73451 -11.53045 -11.51298 -11.43767 -11.11343 -11.07763 -10.96864 -10.85541 -10.76503 -10.56828 -10.47593 -10.16629 -9.93411 -9.37035 -9.20002 -9.10280 -8.67483 -8.33790 -8.02561 -6.31798 -4.39772 1.77873 2.57423 3.18849 3.27721 3.30487 3.31683 3.57801 3.85792 4.13342 4.25350 4.33485 4.58305 4.69712 4.74146 4.79546 4.89318 4.96651 5.05889 5.09906 5.11685 5.23399 5.25361 5.41591 5.51335 5.52300 5.61110 5.67549 5.70348 5.84009 5.84228 5.86166 5.89585 5.94195 6.05317 6.22173 6.39656 6.51345 6.75993 6.79466 6.83033 6.92849 7.16431 7.21424 7.32683 7.71219 7.86687 8.01068 8.02701 8.42400 8.64004 9.29000 9.41850 10.76265 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018999 B = 0.002442 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.434033 B =11464.394923 C =11865.716954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.375 6.375 4 C 0.079 3.921 5 H 0.074 0.926 6 C -0.141 4.141 7 C -0.122 4.122 8 C -0.133 4.133 9 C 0.141 3.859 10 H 0.107 0.893 11 N -0.702 5.702 12 C 0.514 3.486 13 O -0.513 6.513 14 C 0.506 3.494 15 O -0.540 6.540 16 N -0.574 5.574 17 C 0.099 3.901 18 C -0.121 4.121 19 C 0.248 3.752 20 O -0.583 6.583 21 C -0.535 4.535 22 H 0.069 0.931 23 C 0.069 3.931 24 N -0.897 5.897 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.098 3.902 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.409 0.591 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.385 0.615 47 H 0.270 0.730 48 H 0.069 0.931 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -6.341 21.449 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.295 6.295 4 C 0.020 3.980 5 H 0.092 0.908 6 C -0.179 4.179 7 C -0.160 4.160 8 C -0.172 4.172 9 C 0.037 3.963 10 H 0.125 0.875 11 N -0.356 5.356 12 C 0.295 3.705 13 O -0.388 6.388 14 C 0.288 3.712 15 O -0.419 6.419 16 N -0.306 5.306 17 C -0.023 4.023 18 C -0.159 4.159 19 C 0.207 3.793 20 O -0.393 6.393 21 C -0.573 4.573 22 H 0.087 0.913 23 C -0.134 4.134 24 N -0.536 5.536 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.023 4.023 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.245 0.755 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.237 0.763 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.492 -5.669 21.832 22.825 hybrid contribution 1.086 -1.187 -1.274 2.052 sum -2.406 -6.856 20.559 21.805 Atomic orbital electron populations 1.21747 0.93617 1.02280 1.03286 1.22531 0.95785 0.83636 1.00051 1.87959 1.20013 1.26584 1.94904 1.23209 0.81779 0.97364 0.95660 0.90767 1.22907 0.97264 1.01469 0.96265 1.22292 0.96710 0.98457 0.98542 1.22535 0.97901 0.99636 0.97105 1.21694 0.97790 0.96980 0.79867 0.87514 1.45870 1.66701 1.14892 1.08139 1.20399 0.78438 0.85003 0.86639 1.90698 1.44597 1.21292 1.82234 1.19579 0.81240 0.84917 0.85456 1.90717 1.47981 1.21367 1.81857 1.48685 1.60225 1.11315 1.10371 1.22648 0.99426 0.80251 1.00015 1.22828 1.00343 0.98521 0.94208 1.19501 0.83199 0.87562 0.89017 1.86103 1.35358 1.64376 1.53486 1.21575 1.13590 1.16394 1.05745 0.91323 1.25090 0.96275 0.94070 0.97924 1.69590 1.36666 1.18904 1.28447 0.86321 0.81424 0.78341 0.80662 1.19551 1.20783 1.20707 1.23279 1.00712 1.02305 0.76053 0.91091 0.91865 0.91652 0.93193 0.93403 0.89985 0.91000 0.90882 0.91218 0.90595 0.90324 0.75453 0.89478 0.91337 0.90527 0.90268 0.76311 0.91951 0.91220 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.47 6.50 37.16 0.24 0.71 16 3 O -0.38 -4.01 10.05 -35.23 -0.35 -4.36 16 4 C 0.08 0.72 3.05 -25.07 -0.08 0.64 16 5 H 0.07 0.61 7.41 -51.93 -0.38 0.22 16 6 C -0.14 -1.01 6.62 -24.74 -0.16 -1.17 16 7 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16 8 C -0.13 -1.25 6.59 -25.62 -0.17 -1.42 16 9 C 0.14 1.57 3.00 -66.82 -0.20 1.37 16 10 H 0.11 1.41 7.49 -51.93 -0.39 1.02 16 11 N -0.70 -9.26 4.98 -53.15 -0.26 -9.53 16 12 C 0.51 8.68 7.85 -11.58 -0.09 8.59 16 13 O -0.51 -9.29 13.43 5.50 0.07 -9.21 16 14 C 0.51 10.14 7.91 -11.59 -0.09 10.05 16 15 O -0.54 -11.71 16.80 5.50 0.09 -11.62 16 16 N -0.57 -12.23 3.33 -171.03 -0.57 -12.80 16 17 C 0.10 1.93 6.06 -2.53 -0.02 1.92 16 18 C -0.12 -2.50 6.22 -24.59 -0.15 -2.66 16 19 C 0.25 6.03 0.85 -89.94 -0.08 5.95 16 20 O -0.58 -14.85 13.08 -35.23 -0.46 -15.31 16 21 C -0.53 -13.90 8.10 -34.44 -0.28 -14.18 16 22 H 0.07 1.76 7.76 -52.49 -0.41 1.35 16 23 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 24 N -0.90 -23.60 10.99 55.43 0.61 -22.99 16 25 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.10 2.35 5.53 -3.07 -0.02 2.33 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 40 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.41 4.96 7.83 -40.82 -0.32 4.64 16 42 H 0.09 1.60 6.16 -51.93 -0.32 1.28 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.51 8.02 -51.93 -0.42 1.09 16 45 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 46 H 0.39 10.02 7.05 45.56 0.32 10.34 16 47 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 48 H 0.07 1.80 8.07 -51.93 -0.42 1.38 16 49 H 0.07 1.84 7.81 -51.92 -0.41 1.44 16 LS Contribution 395.71 15.07 5.96 5.96 Total: -1.00 -29.46 395.71 -8.26 -37.72 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -7.36 Total: 14.81 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -0.98 Total: 12.05 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.22 Total: -45.32 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.65 Total: -40.50 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.46 -8.26 -37.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118225895.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.541 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds