Wall clock time and date at job start Tue Mar 31 2020 23:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.46743 * 2 1 4 4 C 1.42905 * 113.99820 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.05366 * 28.58776 * 4 3 2 6 6 C 1.53874 * 110.03503 * 267.16640 * 4 3 2 7 7 C 1.54269 * 106.60073 * 240.71739 * 6 4 3 8 8 C 1.54892 * 104.18993 * 336.38782 * 7 6 4 9 9 C 1.54267 * 110.03091 * 149.99773 * 4 3 2 10 10 H 1.08998 * 110.60132 * 24.16736 * 9 4 3 11 11 N 1.46499 * 110.48965 * 261.57117 * 9 4 3 12 12 C 1.34775 * 120.00051 * 158.77079 * 11 9 4 13 13 O 1.21350 * 119.99964 * 0.02562 * 12 11 9 14 14 C 1.49449 * 119.99971 * 180.02562 * 12 11 9 15 15 O 1.21350 * 120.00065 * 359.97438 * 14 12 11 16 16 N 1.34783 * 119.99930 * 180.02562 * 14 12 11 17 17 C 1.47426 * 125.64566 * 0.03558 * 16 14 12 18 18 C 1.55123 * 104.93763 * 203.96828 * 17 16 14 19 19 C 1.55153 * 101.48972 * 323.22551 * 18 17 16 20 20 O 1.42907 * 110.71735 * 276.83326 * 19 18 17 21 21 C 1.50697 * 110.72031 * 153.73548 * 19 18 17 22 22 H 1.07991 * 120.00219 * 357.85892 * 21 19 18 23 23 C 1.37881 * 119.99586 * 177.86131 * 21 19 18 24 24 N 1.31509 * 120.00340 * 8.09943 * 23 21 19 25 25 Si 1.86805 * 119.99797 * 188.10277 * 23 21 19 26 26 H 1.48495 * 109.47249 * 179.97438 * 25 23 21 27 27 H 1.48495 * 109.46821 * 300.00054 * 25 23 21 28 28 H 1.48502 * 109.46950 * 59.99846 * 25 23 21 29 29 C 1.47013 * 125.64722 * 179.97438 * 16 14 12 30 30 H 1.08997 * 109.47261 * 60.00218 * 1 2 3 31 31 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47515 * 299.99820 * 1 2 3 33 33 H 1.09000 * 109.47515 * 240.00180 * 2 1 3 34 34 H 1.08997 * 109.47261 * 119.99782 * 2 1 3 35 35 H 1.09004 * 110.02904 * 121.42679 * 6 4 3 36 36 H 1.09005 * 110.06901 * 0.02562 * 6 4 3 37 37 H 1.08998 * 110.48380 * 217.71334 * 7 6 4 38 38 H 1.08998 * 110.59619 * 95.12021 * 7 6 4 39 39 H 1.09004 * 110.75892 * 279.62499 * 8 7 6 40 40 H 1.09001 * 110.75073 * 156.26181 * 8 7 6 41 41 H 0.96996 * 119.99910 * 338.77948 * 11 9 4 42 42 H 1.08994 * 110.36727 * 322.93038 * 17 16 14 43 43 H 1.09002 * 110.36342 * 85.14743 * 17 16 14 44 44 H 1.09000 * 111.16200 * 205.13112 * 18 17 16 45 45 H 1.09004 * 110.93321 * 81.22206 * 18 17 16 46 46 H 0.96701 * 113.99928 * 170.90388 * 20 19 18 47 47 H 0.97002 * 120.00238 * 4.05155 * 24 23 21 48 48 H 1.08998 * 109.88880 * 59.55849 * 29 16 14 49 49 H 1.09007 * 109.88483 * 298.38811 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8746 0.5934 -0.4890 6 6 3.9501 1.5733 1.4446 7 6 4.6754 2.9310 1.5471 8 6 5.0776 3.2577 0.0875 9 6 3.8587 2.7531 -0.7242 10 1 3.0549 3.4889 -0.7025 11 7 4.2482 2.4614 -2.1060 12 6 4.2425 3.4433 -3.0292 13 8 3.9153 4.5690 -2.7158 14 6 4.6393 3.1456 -4.4390 15 8 4.9669 2.0200 -4.7524 16 7 4.6342 4.1277 -5.3622 17 6 4.2617 5.5333 -5.1193 18 6 3.8232 6.0759 -6.5047 19 6 4.8189 5.3524 -7.4493 20 8 6.0625 6.0541 -7.5063 21 6 4.2309 5.2003 -8.8285 22 1 3.2274 5.5454 -9.0287 23 6 4.9743 4.6207 -9.8347 24 7 6.1301 4.0577 -9.5577 25 14 4.3397 4.6351 -11.5916 26 1 5.3180 3.9536 -12.4769 27 1 3.0371 3.9248 -11.6531 28 1 4.1599 6.0388 -12.0414 29 6 5.0003 3.9748 -6.7778 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.6459 0.7612 1.6559 36 1 3.1159 1.5417 2.1456 37 1 5.5610 2.8437 2.1764 38 1 4.0043 3.6956 1.9383 39 1 5.9806 2.7165 -0.1949 40 1 5.2121 4.3313 -0.0449 41 1 4.5099 1.5617 -2.3565 42 1 3.4361 5.5898 -4.4100 43 1 5.1193 6.0941 -4.7476 44 1 3.9470 7.1574 -6.5609 45 1 2.7952 5.7899 -6.7274 46 1 6.7636 5.5750 -7.9690 47 1 6.4324 3.9980 -8.6379 48 1 4.3474 3.2424 -7.2526 49 1 6.0395 3.6562 -6.8596 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118225896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:49 Heat of formation + Delta-G solvation = -166.101307 kcal Electronic energy + Delta-G solvation = -30700.368333 eV Core-core repulsion = 26434.370287 eV Total energy + Delta-G solvation = -4265.998046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68332 -39.58252 -38.44184 -37.46021 -36.61808 -34.85194 -33.72176 -32.27078 -31.52101 -30.32936 -28.49251 -27.96503 -27.68600 -25.66405 -23.75246 -23.19474 -22.10565 -21.02740 -20.81533 -20.07318 -19.54214 -18.08883 -17.61636 -17.26804 -16.64003 -16.19548 -15.88790 -15.76813 -15.30431 -15.07499 -14.72819 -14.38824 -13.92898 -13.83092 -13.70770 -13.59055 -13.23520 -13.21952 -13.09367 -12.98816 -12.52190 -12.42898 -12.23763 -12.06918 -11.73193 -11.56225 -11.50138 -11.31766 -11.12536 -11.07316 -11.04127 -10.87656 -10.82874 -10.63699 -10.46433 -10.16495 -9.97752 -9.49642 -9.29696 -9.18065 -8.67426 -8.29118 -8.21686 -6.59077 -4.40944 1.66315 2.45431 3.27021 3.35152 3.37143 3.45674 3.55958 3.72685 4.08863 4.28826 4.36819 4.52179 4.57832 4.71457 4.80702 4.86434 4.94943 5.02722 5.04468 5.11327 5.15273 5.20562 5.33279 5.36710 5.54245 5.57746 5.61910 5.62310 5.65598 5.69500 5.80837 5.82493 5.82934 5.92768 6.08953 6.17466 6.29110 6.55558 6.61197 6.62434 6.82816 6.89077 6.99827 7.13139 7.71526 7.80099 7.88898 8.16167 8.27641 8.52958 8.89094 9.30606 10.70610 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.002470 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.551140 B =11333.989454 C =12038.763397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.079 3.921 5 H 0.071 0.929 6 C -0.143 4.143 7 C -0.119 4.119 8 C -0.135 4.135 9 C 0.143 3.857 10 H 0.109 0.891 11 N -0.700 5.700 12 C 0.515 3.485 13 O -0.513 6.513 14 C 0.508 3.492 15 O -0.537 6.537 16 N -0.574 5.574 17 C 0.097 3.903 18 C -0.113 4.113 19 C 0.229 3.771 20 O -0.580 6.580 21 C -0.611 4.611 22 H 0.063 0.937 23 C 0.031 3.969 24 N -0.902 5.902 25 Si 1.072 2.928 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.284 1.284 29 C 0.084 3.916 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.410 0.590 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.371 0.629 47 H 0.266 0.734 48 H 0.078 0.922 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -6.495 21.754 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.021 3.979 5 H 0.089 0.911 6 C -0.181 4.181 7 C -0.157 4.157 8 C -0.173 4.173 9 C 0.038 3.962 10 H 0.127 0.873 11 N -0.354 5.354 12 C 0.297 3.703 13 O -0.387 6.387 14 C 0.290 3.710 15 O -0.416 6.416 16 N -0.306 5.306 17 C -0.025 4.025 18 C -0.150 4.150 19 C 0.189 3.811 20 O -0.387 6.387 21 C -0.649 4.649 22 H 0.081 0.919 23 C -0.174 4.174 24 N -0.541 5.541 25 Si 0.899 3.101 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.211 1.211 29 C -0.038 4.038 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.246 0.754 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.220 0.780 47 H 0.080 0.920 48 H 0.097 0.903 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.519 -6.145 20.644 22.235 hybrid contribution 0.249 -0.815 1.170 1.448 sum -5.270 -6.960 21.814 23.496 Atomic orbital electron populations 1.21745 0.93610 1.02293 1.03270 1.22537 0.95785 0.83688 1.00073 1.87988 1.20088 1.26570 1.94961 1.22961 0.81873 0.97458 0.95655 0.91116 1.22610 1.00767 0.98503 0.96219 1.22256 1.00317 0.96694 0.96423 1.22875 0.97432 1.02524 0.94497 1.21947 0.97828 0.96844 0.79536 0.87323 1.45760 1.67822 1.13108 1.08693 1.20299 0.78284 0.85146 0.86602 1.90704 1.45915 1.21089 1.81020 1.19633 0.80839 0.84893 0.85656 1.90728 1.48916 1.20999 1.80911 1.48591 1.61922 1.09671 1.10436 1.22714 1.00825 0.80213 0.98712 1.22781 0.99155 1.00733 0.92380 1.19814 0.82504 0.85167 0.93617 1.86294 1.22852 1.49427 1.80171 1.22321 1.03542 1.44463 0.94605 0.91907 1.26017 0.94149 0.91686 1.05542 1.70990 1.20386 1.40405 1.22338 0.83499 0.75598 0.76704 0.74326 1.20550 1.21188 1.21068 1.23610 1.00060 1.02842 0.77292 0.91679 0.91084 0.91860 0.93207 0.93380 0.90968 0.90266 0.91014 0.90903 0.90653 0.90068 0.75388 0.89168 0.91279 0.90039 0.90277 0.77993 0.92031 0.90329 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.06 0.45 6.50 37.16 0.24 0.69 16 3 O -0.38 -3.90 9.90 -35.23 -0.35 -4.25 16 4 C 0.08 0.71 3.11 -25.61 -0.08 0.63 16 5 H 0.07 0.56 7.37 -51.93 -0.38 0.18 16 6 C -0.14 -1.00 6.61 -25.61 -0.17 -1.17 16 7 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 8 C -0.13 -1.25 6.57 -24.74 -0.16 -1.41 16 9 C 0.14 1.56 2.89 -66.27 -0.19 1.37 16 10 H 0.11 1.40 7.60 -51.93 -0.39 1.00 16 11 N -0.70 -9.05 5.17 -52.63 -0.27 -9.32 16 12 C 0.52 8.53 7.85 -11.59 -0.09 8.43 16 13 O -0.51 -9.07 13.49 5.50 0.07 -9.00 16 14 C 0.51 9.97 7.91 -11.58 -0.09 9.88 16 15 O -0.54 -11.42 16.80 5.50 0.09 -11.33 16 16 N -0.57 -11.99 3.33 -170.89 -0.57 -12.56 16 17 C 0.10 1.88 6.06 -2.41 -0.01 1.86 16 18 C -0.11 -2.33 6.25 -24.47 -0.15 -2.48 16 19 C 0.23 5.56 0.82 -89.94 -0.07 5.48 16 20 O -0.58 -14.48 13.04 -35.23 -0.46 -14.94 16 21 C -0.61 -16.20 8.09 -34.44 -0.28 -16.48 16 22 H 0.06 1.65 7.76 -52.49 -0.41 1.24 16 23 C 0.03 0.83 5.29 -17.82 -0.09 0.74 16 24 N -0.90 -25.07 12.89 55.43 0.71 -24.36 16 25 Si 1.07 23.86 29.91 -169.99 -5.08 18.78 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.08 1.97 5.21 -3.07 -0.02 1.96 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.39 8.10 -51.93 -0.42 -0.03 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.56 7.96 -51.93 -0.41 0.14 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.41 4.85 7.80 -40.82 -0.32 4.53 16 42 H 0.09 1.64 6.16 -51.93 -0.32 1.32 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 45 H 0.08 1.58 8.01 -51.93 -0.42 1.17 16 46 H 0.37 9.24 6.50 45.56 0.30 9.54 16 47 H 0.27 7.23 4.03 -40.82 -0.16 7.06 16 48 H 0.08 2.00 7.81 -51.93 -0.41 1.59 16 49 H 0.06 1.50 6.77 -51.93 -0.35 1.15 16 LS Contribution 391.56 15.07 5.90 5.90 Total: -1.00 -30.83 391.56 -8.06 -38.89 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -7.14 Total: 14.43 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -0.96 Total: 7.76 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.13 Total: -46.24 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.64 Total: -39.52 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.83 -8.06 -38.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118225896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.208 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds