Wall clock time and date at job start Tue Mar 31 2020 23:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47437 * 2 1 4 4 O 1.42897 * 109.46610 * 119.99976 * 2 1 3 5 5 C 1.42901 * 113.99907 * 150.00069 * 4 2 1 6 6 H 1.09003 * 112.84902 * 18.80379 * 5 4 2 7 7 C 1.53785 * 113.61365 * 150.00150 * 5 4 2 8 8 C 1.53779 * 87.08099 * 140.06595 * 7 5 4 9 9 H 1.08995 * 113.61965 * 89.19953 * 8 7 5 10 10 N 1.46503 * 113.61305 * 220.01485 * 8 7 5 11 11 C 1.34775 * 120.00154 * 204.99869 * 10 8 7 12 12 O 1.21347 * 119.99820 * 0.02562 * 11 10 8 13 13 C 1.49452 * 119.99876 * 180.02562 * 11 10 8 14 14 O 1.21349 * 119.99810 * 359.72360 * 13 11 10 15 15 N 1.34775 * 119.99876 * 179.97438 * 13 11 10 16 16 C 1.47024 * 125.64579 * 359.41907 * 15 13 11 17 17 C 1.54342 * 107.26362 * 178.84919 * 16 15 13 18 18 C 1.55150 * 103.01807 * 338.13938 * 17 16 15 19 19 O 1.42900 * 111.00287 * 277.23032 * 18 17 16 20 20 C 1.50705 * 111.00450 * 153.38622 * 18 17 16 21 21 H 1.08003 * 119.99469 * 272.62713 * 20 18 17 22 22 C 1.37871 * 120.00296 * 92.62013 * 20 18 17 23 23 N 1.31522 * 119.99792 * 173.50983 * 22 20 18 24 24 Si 1.86803 * 120.00053 * 353.51695 * 22 20 18 25 25 H 1.48507 * 109.47137 * 87.32029 * 24 22 20 26 26 H 1.48497 * 109.46808 * 207.31951 * 24 22 20 27 27 H 1.48499 * 109.46949 * 327.31977 * 24 22 20 28 28 C 1.47415 * 125.65040 * 179.72203 * 15 13 11 29 29 C 1.53782 * 87.08235 * 334.56441 * 8 7 5 30 30 H 1.08996 * 109.47271 * 300.00186 * 1 2 3 31 31 H 1.09007 * 109.46717 * 60.00342 * 1 2 3 32 32 H 1.09005 * 109.47577 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46906 * 239.99230 * 2 1 3 34 34 H 1.09004 * 109.47255 * 300.00211 * 3 2 1 35 35 H 1.09010 * 109.47082 * 59.99616 * 3 2 1 36 36 H 1.08998 * 109.47408 * 179.97438 * 3 2 1 37 37 H 1.08994 * 113.61446 * 25.51113 * 7 5 4 38 38 H 1.09007 * 113.61027 * 254.61253 * 7 5 4 39 39 H 0.97006 * 119.99596 * 24.99681 * 10 8 7 40 40 H 1.09003 * 109.87978 * 298.38772 * 16 15 13 41 41 H 1.08996 * 109.88587 * 59.55825 * 16 15 13 42 42 H 1.08993 * 110.84810 * 219.67001 * 17 16 15 43 43 H 1.09001 * 110.66813 * 96.52415 * 17 16 15 44 44 H 0.96707 * 114.00225 * 168.40237 * 19 18 17 45 45 H 0.96999 * 119.99542 * 180.02562 * 23 22 20 46 46 H 1.09004 * 110.36830 * 322.93589 * 28 15 13 47 47 H 1.09003 * 110.36828 * 85.25303 * 28 15 13 48 48 H 1.08997 * 113.61636 * 139.98431 * 29 8 7 49 49 H 1.08994 * 113.61269 * 270.88575 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9887 6 1 3.8179 -0.9497 0.1268 7 6 4.1072 -1.4003 2.2738 8 6 4.4995 -2.8223 1.8394 9 1 5.3896 -2.8572 1.2113 10 7 4.5460 -3.7820 2.9454 11 6 5.3226 -4.8796 2.8531 12 8 5.9837 -5.0727 1.8540 13 6 5.3695 -5.8588 3.9811 14 8 4.7121 -5.6630 4.9822 15 7 6.1457 -6.9567 3.8886 16 6 6.9839 -7.3187 2.7363 17 6 7.7096 -8.6334 3.0928 18 6 7.6684 -8.6459 4.6437 19 8 8.7268 -7.8567 5.1906 20 6 7.7191 -10.0556 5.1742 21 1 6.8060 -10.6187 5.2989 22 6 8.9311 -10.6264 5.5000 23 7 8.9675 -11.8057 6.0811 24 14 10.5215 -9.7246 5.1163 25 1 10.8617 -8.8196 6.2435 26 1 11.6156 -10.7103 4.9252 27 1 10.3512 -8.9272 3.8752 28 6 6.2901 -7.9965 4.9235 29 6 3.1822 -2.8590 1.0468 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.5130 -1.3709 3.1870 38 1 4.9441 -0.7020 2.2894 39 1 4.0177 -3.6273 3.7441 40 1 6.3593 -7.4651 1.8550 41 1 7.7155 -6.5329 2.5485 42 1 8.7388 -8.6179 2.7345 43 1 7.1740 -9.4911 2.6858 44 1 8.6418 -7.6876 6.1389 45 1 9.8202 -12.2070 6.3107 46 1 6.2767 -7.5478 5.9168 47 1 5.4959 -8.7373 4.8304 48 1 3.2722 -3.3384 0.0721 49 1 2.3351 -3.2285 1.6248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118226611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:05 Heat of formation + Delta-G solvation = -136.759136 kcal Electronic energy + Delta-G solvation = -29903.496829 eV Core-core repulsion = 25638.771155 eV Total energy + Delta-G solvation = -4264.725674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.80720 -39.87186 -38.64795 -37.57629 -37.17895 -34.92270 -33.59481 -32.39899 -32.24725 -30.47515 -28.49146 -27.70544 -26.46682 -26.14907 -24.97983 -23.22455 -21.97448 -21.63909 -20.57168 -19.93251 -19.55693 -17.80564 -17.58333 -17.39761 -16.63707 -16.07743 -15.99804 -15.60135 -15.32156 -15.16831 -14.82176 -14.63517 -14.47208 -14.17468 -13.77698 -13.52153 -13.22395 -13.08467 -12.85954 -12.73456 -12.69344 -12.61419 -12.56054 -12.07000 -12.02326 -11.80736 -11.69524 -11.58020 -11.45915 -11.27488 -11.23183 -11.04635 -10.99350 -10.50244 -10.36950 -10.25744 -9.85209 -9.34915 -9.31623 -9.25938 -8.71588 -8.55390 -8.24284 -6.21548 -4.34121 1.57033 2.40236 3.24446 3.35162 3.45264 3.52109 3.68441 3.72988 4.07273 4.12265 4.41274 4.41710 4.48213 4.49364 4.51971 4.61546 4.74348 4.92536 5.00332 5.12786 5.13756 5.22897 5.30751 5.35681 5.36647 5.36907 5.39710 5.55766 5.58022 5.69746 5.70513 5.73698 5.74489 5.77807 5.97902 6.08905 6.21260 6.34015 6.44672 6.63432 6.75583 6.89584 7.01722 7.08514 7.41151 7.62716 7.79795 8.09264 8.17551 8.58106 8.78133 9.39582 10.87025 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036657 B = 0.001935 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.652438 B =14465.357177 C =14649.767341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.365 6.365 5 C 0.067 3.933 6 H 0.091 0.909 7 C -0.143 4.143 8 C 0.123 3.877 9 H 0.121 0.879 10 N -0.694 5.694 11 C 0.513 3.487 12 O -0.514 6.514 13 C 0.511 3.489 14 O -0.538 6.538 15 N -0.575 5.575 16 C 0.108 3.892 17 C -0.126 4.126 18 C 0.220 3.780 19 O -0.558 6.558 20 C -0.553 4.553 21 H 0.082 0.918 22 C 0.076 3.924 23 N -0.886 5.886 24 Si 0.950 3.050 25 H -0.293 1.293 26 H -0.326 1.326 27 H -0.268 1.268 28 C 0.086 3.914 29 C -0.168 4.168 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.413 0.587 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.371 0.629 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 23.645 -12.428 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.284 6.284 5 C 0.008 3.992 6 H 0.109 0.891 7 C -0.181 4.181 8 C 0.018 3.982 9 H 0.139 0.861 10 N -0.347 5.347 11 C 0.294 3.706 12 O -0.388 6.388 13 C 0.294 3.706 14 O -0.416 6.416 15 N -0.307 5.307 16 C -0.015 4.015 17 C -0.164 4.164 18 C 0.179 3.821 19 O -0.366 6.366 20 C -0.590 4.590 21 H 0.100 0.900 22 C -0.130 4.130 23 N -0.521 5.521 24 Si 0.785 3.215 25 H -0.220 1.220 26 H -0.257 1.257 27 H -0.194 1.194 28 C -0.035 4.035 29 C -0.207 4.207 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.250 0.750 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.219 0.781 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.332 23.485 -12.990 29.536 hybrid contribution 0.468 0.446 0.541 0.843 sum -11.864 23.931 -12.449 29.469 Atomic orbital electron populations 1.21867 0.93575 1.02822 1.02513 1.22157 0.95126 0.92426 0.88211 1.22331 1.01541 0.96823 1.02619 1.87997 1.35759 1.69286 1.35341 1.23432 0.85367 0.92193 0.98163 0.89073 1.23630 0.99581 0.95819 0.99067 1.22270 0.99036 0.87738 0.89140 0.86121 1.45655 1.46298 1.22037 1.20751 1.20317 0.79944 0.82623 0.87741 1.90742 1.41753 1.74907 1.31410 1.19610 0.81275 0.82231 0.87523 1.90731 1.43695 1.75586 1.31624 1.48466 1.41567 1.20736 1.19952 1.22279 0.93523 0.98358 0.87300 1.23073 1.00985 0.95081 0.97249 1.20268 0.81220 0.90027 0.90566 1.86141 1.48792 1.73775 1.27871 1.21076 0.95695 0.96107 1.46152 0.89980 1.25106 1.00424 0.94800 0.92653 1.69968 1.26955 1.16685 1.38477 0.85660 0.79589 0.76304 0.79902 1.22045 1.25712 1.19438 1.23337 1.01126 0.88396 0.90652 1.24037 0.98597 0.96434 1.01632 0.91765 0.91306 0.91913 0.92109 0.91702 0.91739 0.92459 0.88284 0.89956 0.74987 0.91391 0.90973 0.89948 0.89542 0.78083 0.92354 0.90603 0.90182 0.90513 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.56 37.16 0.36 -0.48 16 2 C 0.08 0.50 3.22 -26.73 -0.09 0.41 16 3 C -0.18 -0.94 9.53 37.15 0.35 -0.58 16 4 O -0.36 -3.06 10.00 -35.23 -0.35 -3.41 16 5 C 0.07 0.48 4.13 -25.91 -0.11 0.38 16 6 H 0.09 0.53 7.77 -51.93 -0.40 0.12 16 7 C -0.14 -1.04 7.66 -25.92 -0.20 -1.24 16 8 C 0.12 1.13 4.24 -67.12 -0.28 0.84 16 9 H 0.12 1.17 7.46 -51.93 -0.39 0.79 16 10 N -0.69 -8.00 5.35 -53.45 -0.29 -8.29 16 11 C 0.51 7.73 7.86 -11.58 -0.09 7.64 16 12 O -0.51 -8.50 13.72 5.50 0.08 -8.42 16 13 C 0.51 8.97 7.91 -11.58 -0.09 8.88 16 14 O -0.54 -10.18 16.73 5.50 0.09 -10.09 16 15 N -0.58 -10.63 3.33 -171.02 -0.57 -11.20 16 16 C 0.11 1.92 5.49 -3.05 -0.02 1.90 16 17 C -0.13 -2.49 5.90 -24.89 -0.15 -2.63 16 18 C 0.22 4.78 0.70 -89.63 -0.06 4.72 16 19 O -0.56 -12.04 8.52 -35.23 -0.30 -12.34 16 20 C -0.55 -14.34 8.88 -34.44 -0.31 -14.65 16 21 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 22 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 23 N -0.89 -25.88 13.96 55.43 0.77 -25.11 16 24 Si 0.95 23.13 24.93 -169.99 -4.24 18.90 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.33 -8.15 7.11 56.52 0.40 -7.75 16 27 H -0.27 -6.42 5.42 56.52 0.31 -6.12 16 28 C 0.09 1.71 6.07 -2.54 -0.02 1.69 16 29 C -0.17 -1.39 7.71 -25.92 -0.20 -1.59 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.34 7.72 -51.93 -0.40 -0.06 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.10 0.75 8.12 -51.93 -0.42 0.32 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.41 4.39 8.20 -40.82 -0.33 4.06 16 40 H 0.07 1.13 7.72 -51.93 -0.40 0.73 16 41 H 0.07 1.30 7.55 -51.93 -0.39 0.91 16 42 H 0.08 1.67 6.65 -51.93 -0.35 1.33 16 43 H 0.09 1.66 8.03 -51.93 -0.42 1.24 16 44 H 0.37 7.08 8.99 45.56 0.41 7.49 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 1.49 8.02 -51.93 -0.42 1.07 16 47 H 0.08 1.59 7.98 -51.93 -0.41 1.18 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -31.73 394.30 -7.24 -38.97 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.38 Total: 7.79 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.99 Total: 7.25 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.08 Total: -44.59 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.49 Total: -34.25 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.24 Total: 18.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.73 -7.24 -38.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118226611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.792 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds