Wall clock time and date at job start Tue Mar 31 2020 23:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47437 * 2 1 4 4 O 1.42897 * 109.46610 * 119.99976 * 2 1 3 5 5 C 1.42901 * 113.99907 * 150.00069 * 4 2 1 6 6 H 1.09003 * 112.84902 * 18.80379 * 5 4 2 7 7 C 1.53785 * 113.61365 * 150.00150 * 5 4 2 8 8 C 1.53779 * 87.08099 * 140.06595 * 7 5 4 9 9 H 1.08995 * 113.61965 * 89.19953 * 8 7 5 10 10 N 1.46503 * 113.61305 * 220.01485 * 8 7 5 11 11 C 1.34775 * 120.00154 * 204.99869 * 10 8 7 12 12 O 1.21347 * 119.99820 * 0.02562 * 11 10 8 13 13 C 1.49452 * 119.99876 * 180.02562 * 11 10 8 14 14 O 1.21349 * 119.99810 * 359.72360 * 13 11 10 15 15 N 1.34775 * 119.99876 * 179.97438 * 13 11 10 16 16 C 1.47024 * 125.64579 * 359.41907 * 15 13 11 17 17 C 1.54342 * 107.26362 * 178.84919 * 16 15 13 18 18 C 1.55150 * 103.01807 * 338.13938 * 17 16 15 19 19 O 1.42900 * 111.00287 * 277.23032 * 18 17 16 20 20 C 1.50705 * 111.00450 * 153.38622 * 18 17 16 21 21 H 1.08003 * 119.99469 * 272.62713 * 20 18 17 22 22 C 1.37871 * 120.00296 * 92.62013 * 20 18 17 23 23 N 1.31522 * 119.99792 * 173.50983 * 22 20 18 24 24 Si 1.86803 * 120.00053 * 353.51695 * 22 20 18 25 25 H 1.48507 * 109.47137 * 87.32029 * 24 22 20 26 26 H 1.48497 * 109.46808 * 207.31951 * 24 22 20 27 27 H 1.48499 * 109.46949 * 327.31977 * 24 22 20 28 28 C 1.47415 * 125.65040 * 179.72203 * 15 13 11 29 29 C 1.53782 * 87.08235 * 334.56441 * 8 7 5 30 30 H 1.08996 * 109.47271 * 300.00186 * 1 2 3 31 31 H 1.09007 * 109.46717 * 60.00342 * 1 2 3 32 32 H 1.09005 * 109.47577 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46906 * 239.99230 * 2 1 3 34 34 H 1.09004 * 109.47255 * 300.00211 * 3 2 1 35 35 H 1.09010 * 109.47082 * 59.99616 * 3 2 1 36 36 H 1.08998 * 109.47408 * 179.97438 * 3 2 1 37 37 H 1.08994 * 113.61446 * 25.51113 * 7 5 4 38 38 H 1.09007 * 113.61027 * 254.61253 * 7 5 4 39 39 H 0.97006 * 119.99596 * 24.99681 * 10 8 7 40 40 H 1.09003 * 109.87978 * 298.38772 * 16 15 13 41 41 H 1.08996 * 109.88587 * 59.55825 * 16 15 13 42 42 H 1.08993 * 110.84810 * 219.67001 * 17 16 15 43 43 H 1.09001 * 110.66813 * 96.52415 * 17 16 15 44 44 H 0.96707 * 114.00225 * 168.40237 * 19 18 17 45 45 H 0.96999 * 119.99542 * 180.02562 * 23 22 20 46 46 H 1.09004 * 110.36830 * 322.93589 * 28 15 13 47 47 H 1.09003 * 110.36828 * 85.25303 * 28 15 13 48 48 H 1.08997 * 113.61636 * 139.98431 * 29 8 7 49 49 H 1.08994 * 113.61269 * 270.88575 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9887 6 1 3.8179 -0.9497 0.1268 7 6 4.1072 -1.4003 2.2738 8 6 4.4995 -2.8223 1.8394 9 1 5.3896 -2.8572 1.2113 10 7 4.5460 -3.7820 2.9454 11 6 5.3226 -4.8796 2.8531 12 8 5.9837 -5.0727 1.8540 13 6 5.3695 -5.8588 3.9811 14 8 4.7121 -5.6630 4.9822 15 7 6.1457 -6.9567 3.8886 16 6 6.9839 -7.3187 2.7363 17 6 7.7096 -8.6334 3.0928 18 6 7.6684 -8.6459 4.6437 19 8 8.7268 -7.8567 5.1906 20 6 7.7191 -10.0556 5.1742 21 1 6.8060 -10.6187 5.2989 22 6 8.9311 -10.6264 5.5000 23 7 8.9675 -11.8057 6.0811 24 14 10.5215 -9.7246 5.1163 25 1 10.8617 -8.8196 6.2435 26 1 11.6156 -10.7103 4.9252 27 1 10.3512 -8.9272 3.8752 28 6 6.2901 -7.9965 4.9235 29 6 3.1822 -2.8590 1.0468 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5140 -0.8899 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4424 0.0005 37 1 3.5130 -1.3709 3.1870 38 1 4.9441 -0.7020 2.2894 39 1 4.0177 -3.6273 3.7441 40 1 6.3593 -7.4651 1.8550 41 1 7.7155 -6.5329 2.5485 42 1 8.7388 -8.6179 2.7345 43 1 7.1740 -9.4911 2.6858 44 1 8.6418 -7.6876 6.1389 45 1 9.8202 -12.2070 6.3107 46 1 6.2767 -7.5478 5.9168 47 1 5.4959 -8.7373 4.8304 48 1 3.2722 -3.3384 0.0721 49 1 2.3351 -3.2285 1.6248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118226611.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:04 Heat of formation + Delta-G solvation = -161.072797 kcal Electronic energy + Delta-G solvation = -29904.551148 eV Core-core repulsion = 25638.771155 eV Total energy + Delta-G solvation = -4265.779994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97576 -40.82834 -39.83895 -39.02492 -37.91081 -36.50016 -34.50913 -34.45147 -32.84453 -32.09507 -30.10424 -28.13200 -27.98906 -26.77011 -26.28358 -24.50774 -23.17578 -22.18923 -21.66403 -21.41352 -20.66677 -19.49129 -18.73704 -18.47172 -17.81891 -17.37728 -17.09330 -16.81004 -16.61114 -16.47790 -15.92176 -15.78493 -15.53248 -15.26857 -14.95366 -14.68110 -14.54662 -14.19659 -14.12969 -13.89822 -13.57673 -13.50384 -13.36712 -13.29821 -13.21568 -13.04672 -12.81868 -12.70217 -12.58450 -12.31563 -12.25478 -12.20587 -12.03979 -12.00122 -11.79516 -11.54623 -11.24761 -10.70004 -10.61859 -10.44288 -10.40019 -10.23775 -9.76172 -8.33902 -6.47572 0.29148 1.19965 1.50890 1.54712 1.75494 2.06749 2.37205 2.46287 2.81197 2.97190 3.27284 3.44184 3.48322 3.51530 3.78838 3.79634 3.88127 4.01096 4.04278 4.16202 4.24359 4.32351 4.35159 4.36840 4.61172 4.66819 4.74013 4.76408 4.76680 4.82700 4.90392 4.91300 4.93780 4.98714 4.99646 5.02241 5.04758 5.18798 5.30674 5.31557 5.34311 5.36285 5.50931 5.98435 6.05243 6.26243 6.39307 6.56749 6.60258 6.88214 6.90995 7.30366 8.78556 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.036657 B = 0.001935 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.652438 B =14465.357177 C =14649.767341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.383 6.383 5 C 0.072 3.928 6 H 0.110 0.890 7 C -0.135 4.135 8 C 0.116 3.884 9 H 0.120 0.880 10 N -0.678 5.678 11 C 0.517 3.483 12 O -0.529 6.529 13 C 0.509 3.491 14 O -0.554 6.554 15 N -0.581 5.581 16 C 0.120 3.880 17 C -0.124 4.124 18 C 0.217 3.783 19 O -0.560 6.560 20 C -0.547 4.547 21 H 0.050 0.950 22 C 0.028 3.972 23 N -0.933 5.933 24 Si 1.006 2.994 25 H -0.285 1.285 26 H -0.337 1.337 27 H -0.259 1.259 28 C 0.095 3.905 29 C -0.166 4.166 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.418 0.582 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.381 0.619 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 26.481 -14.019 32.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 C -0.230 4.230 4 O -0.303 6.303 5 C 0.014 3.986 6 H 0.128 0.872 7 C -0.173 4.173 8 C 0.012 3.988 9 H 0.138 0.862 10 N -0.330 5.330 11 C 0.298 3.702 12 O -0.406 6.406 13 C 0.293 3.707 14 O -0.433 6.433 15 N -0.313 5.313 16 C -0.002 4.002 17 C -0.162 4.162 18 C 0.176 3.824 19 O -0.369 6.369 20 C -0.584 4.584 21 H 0.068 0.932 22 C -0.172 4.172 23 N -0.571 5.571 24 Si 0.840 3.160 25 H -0.212 1.212 26 H -0.269 1.269 27 H -0.184 1.184 28 C -0.027 4.027 29 C -0.205 4.205 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.256 0.744 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.231 0.769 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.507 26.378 -14.584 32.633 hybrid contribution 0.361 -0.401 1.057 1.186 sum -12.147 25.976 -13.527 31.707 Atomic orbital electron populations 1.21885 0.93321 1.02509 1.03029 1.22342 0.95443 0.92924 0.87898 1.22307 1.01626 0.96175 1.02911 1.87978 1.36220 1.69540 1.36544 1.23446 0.85250 0.91227 0.98677 0.87246 1.23592 0.99992 0.94568 0.99126 1.22502 0.99506 0.88135 0.88626 0.86220 1.45686 1.44758 1.21088 1.21509 1.19832 0.80688 0.83011 0.86701 1.90738 1.42854 1.75402 1.31560 1.20119 0.80401 0.82135 0.88050 1.90720 1.44156 1.75906 1.32545 1.48458 1.42228 1.20925 1.19698 1.22182 0.93515 0.97031 0.87442 1.22999 1.01329 0.96531 0.95312 1.20135 0.82485 0.87958 0.91794 1.86095 1.48655 1.73194 1.28942 1.21289 0.94199 0.97977 1.44967 0.93213 1.25813 1.03349 0.95293 0.92746 1.70079 1.27567 1.18579 1.40859 0.84739 0.75976 0.75035 0.80236 1.21191 1.26927 1.18412 1.23022 0.99656 0.88779 0.91248 1.24007 0.97548 0.97606 1.01374 0.92433 0.89634 0.92624 0.91213 0.90349 0.92525 0.92279 0.88484 0.88512 0.74413 0.89806 0.90709 0.90140 0.89334 0.76900 0.92387 0.90596 0.90742 0.90247 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.56 71.98 0.69 -0.77 16 2 C 0.07 0.76 3.22 30.59 0.10 0.86 16 3 C -0.17 -1.48 9.53 71.98 0.69 -0.79 16 4 O -0.38 -5.72 10.00 -148.98 -1.49 -7.21 16 5 C 0.07 0.87 4.13 31.12 0.13 1.00 16 6 H 0.11 0.93 7.77 -2.39 -0.02 0.91 16 7 C -0.13 -1.64 7.66 31.12 0.24 -1.40 16 8 C 0.12 1.87 4.24 45.52 0.19 2.07 16 9 H 0.12 2.04 7.46 -2.39 -0.02 2.02 16 10 N -0.68 -14.34 5.35 -441.37 -2.36 -16.70 16 11 C 0.52 14.63 7.86 87.27 0.69 15.31 16 12 O -0.53 -16.35 13.72 -3.24 -0.04 -16.39 16 13 C 0.51 17.10 7.91 87.27 0.69 17.79 16 14 O -0.55 -20.29 16.73 -3.24 -0.05 -20.34 16 15 N -0.58 -20.59 3.33 -813.35 -2.70 -23.29 16 16 C 0.12 4.03 5.49 86.73 0.48 4.51 16 17 C -0.12 -4.70 5.90 31.79 0.19 -4.51 16 18 C 0.22 9.25 0.70 -10.15 -0.01 9.24 16 19 O -0.56 -23.13 8.52 -148.98 -1.27 -24.40 16 20 C -0.55 -28.64 8.88 25.60 0.23 -28.41 16 21 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 22 C 0.03 1.56 5.46 84.65 0.46 2.02 16 23 N -0.93 -55.73 13.96 21.45 0.30 -55.44 16 24 Si 1.01 47.36 24.93 68.60 1.71 49.07 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 H -0.34 -16.39 7.11 99.48 0.71 -15.68 16 27 H -0.26 -11.66 5.42 99.48 0.54 -11.12 16 28 C 0.10 3.70 6.07 86.86 0.53 4.22 16 29 C -0.17 -2.44 7.71 31.12 0.24 -2.20 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.07 0.61 7.72 -2.39 -0.02 0.59 16 34 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.92 16 39 H 0.42 8.15 8.20 -92.70 -0.76 7.39 16 40 H 0.08 2.58 7.72 -2.39 -0.02 2.56 16 41 H 0.07 2.51 7.55 -2.39 -0.02 2.49 16 42 H 0.08 3.10 6.65 -2.39 -0.02 3.09 16 43 H 0.09 3.30 8.03 -2.39 -0.02 3.28 16 44 H 0.38 13.92 8.99 -74.05 -0.67 13.25 16 45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.08 2.93 8.02 -2.39 -0.02 2.91 16 47 H 0.07 2.96 7.98 -2.39 -0.02 2.94 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.26 394.30 -1.02 -68.28 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.62 Total: 27.48 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 5.52 Total: 18.95 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -4.77 Total: -95.43 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -2.86 Total: -68.35 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.71 Total: 49.07 kcal Total: -67.26 -1.02 -68.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118226611.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.795 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds