Wall clock time and date at job start Tue Mar 31 2020 23:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 119.99842 * 2 1 4 4 C 1.53006 * 109.47011 * 269.99411 * 3 2 1 5 5 H 1.09007 * 109.47388 * 60.02388 * 4 3 2 6 6 C 1.53088 * 109.48436 * 180.02562 * 4 3 2 7 7 C 1.53177 * 109.16513 * 177.59080 * 6 4 3 8 8 C 1.53179 * 109.03792 * 303.02255 * 7 6 4 9 9 C 1.53096 * 109.15883 * 56.97980 * 8 7 6 10 10 O 1.42902 * 109.47900 * 300.00254 * 4 3 2 11 11 C 1.34778 * 120.00002 * 179.97438 * 2 1 3 12 12 O 1.21350 * 119.99995 * 183.67028 * 11 2 1 13 13 C 1.49449 * 120.00118 * 3.66457 * 11 2 1 14 14 O 1.21352 * 119.99716 * 354.20017 * 13 11 2 15 15 N 1.34772 * 119.99805 * 174.19550 * 13 11 2 16 16 C 1.47418 * 125.65120 * 359.94734 * 15 13 11 17 17 C 1.54911 * 104.83277 * 155.91523 * 16 15 13 18 18 C 1.55157 * 101.57864 * 37.01377 * 17 16 15 19 19 O 1.42907 * 110.72031 * 82.86226 * 18 17 16 20 20 C 1.50701 * 110.87176 * 206.06077 * 18 17 16 21 21 H 1.07998 * 119.99785 * 355.06651 * 20 18 17 22 22 C 1.37879 * 120.00169 * 175.06231 * 20 18 17 23 23 N 1.31515 * 119.99545 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99887 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47097 * 60.00358 * 24 22 20 26 26 H 1.48506 * 109.46751 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47216 * 300.00009 * 24 22 20 28 28 C 1.47025 * 125.64506 * 180.02562 * 15 13 11 29 29 H 1.09004 * 109.47300 * 264.00030 * 1 2 3 30 30 H 1.08997 * 109.47479 * 24.00344 * 1 2 3 31 31 H 1.09001 * 109.47198 * 144.00015 * 1 2 3 32 32 H 1.09000 * 109.47481 * 29.99015 * 3 2 1 33 33 H 1.08996 * 109.47479 * 150.00088 * 3 2 1 34 34 H 1.08999 * 109.52658 * 297.50123 * 6 4 3 35 35 H 1.09005 * 109.51815 * 57.68417 * 6 4 3 36 36 H 1.09003 * 109.54520 * 183.15548 * 7 6 4 37 37 H 1.09000 * 109.61123 * 62.93446 * 7 6 4 38 38 H 1.09001 * 109.52086 * 297.07279 * 8 7 6 39 39 H 1.09000 * 109.57033 * 176.91441 * 8 7 6 40 40 H 1.08998 * 109.47352 * 182.40940 * 9 8 7 41 41 H 1.08995 * 109.49263 * 62.38287 * 9 8 7 42 42 H 1.09000 * 110.36732 * 37.08239 * 16 15 13 43 43 H 1.09004 * 110.46688 * 274.80540 * 16 15 13 44 44 H 1.08995 * 111.00569 * 278.93817 * 17 16 15 45 45 H 1.08997 * 111.00559 * 155.08504 * 17 16 15 46 46 H 0.96701 * 113.99803 * 185.02206 * 19 18 17 47 47 H 0.97006 * 119.99340 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.88566 * 61.59725 * 28 15 13 49 49 H 1.08998 * 109.88141 * 300.42559 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5001 1.8410 -1.9564 6 6 3.2185 3.0358 -1.4429 7 6 3.5225 3.4405 -2.8887 8 6 4.3084 2.3147 -3.5679 9 6 3.5002 1.0171 -3.4855 10 8 3.2248 0.7144 -2.1163 11 6 2.1389 -1.1672 0.0005 12 8 3.3505 -1.1683 0.0678 13 6 1.3939 -2.4602 -0.0816 14 8 0.1810 -2.4652 -0.0426 15 7 2.0692 -3.6206 -0.1991 16 6 3.5356 -3.7591 -0.2593 17 6 3.8180 -5.2026 0.2266 18 6 2.6204 -5.9769 -0.3848 19 8 2.8821 -6.3187 -1.7475 20 6 2.3107 -7.2112 0.4224 21 1 2.9471 -7.4894 1.2494 22 6 1.2146 -7.9853 0.1053 23 7 0.4398 -7.6466 -0.9020 24 14 0.8311 -9.5156 1.1054 25 1 0.6043 -9.1364 2.5232 26 1 -0.3901 -10.1662 0.5661 27 1 1.9737 -10.4604 1.0224 28 6 1.4652 -4.9580 -0.2900 29 1 -0.3634 -0.1074 1.0221 30 1 -0.3634 0.9387 -0.4180 31 1 -0.3634 -0.8314 -0.6040 32 1 1.6083 2.0284 0.5137 33 1 3.1498 1.1385 0.5138 34 1 2.6119 3.8072 -0.9686 35 1 4.1526 2.9168 -0.8938 36 1 4.1163 4.3545 -2.8943 37 1 2.5889 3.6088 -3.4255 38 1 5.2645 2.1812 -3.0618 39 1 4.4821 2.5699 -4.6133 40 1 4.0733 0.2032 -3.9295 41 1 2.5617 1.1381 -4.0264 42 1 4.0125 -3.0360 0.4025 43 1 3.8893 -3.6270 -1.2819 44 1 3.8044 -5.2582 1.3151 45 1 4.7643 -5.5703 -0.1699 46 1 2.1354 -6.7358 -2.1987 47 1 -0.3315 -8.1911 -1.1249 48 1 0.8398 -5.0226 -1.1804 49 1 0.8683 -5.1564 0.6001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118247483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:04 Heat of formation + Delta-G solvation = -149.140573 kcal Electronic energy + Delta-G solvation = -31578.033097 eV Core-core repulsion = 27312.770524 eV Total energy + Delta-G solvation = -4265.262574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51191 -39.49758 -38.28164 -37.19534 -35.70958 -34.12309 -33.80246 -32.21820 -32.06085 -30.08794 -28.10127 -27.71374 -26.72608 -25.54564 -24.49963 -23.44319 -22.52424 -21.09148 -20.50240 -19.56818 -18.83144 -17.14593 -16.88136 -16.64354 -16.44248 -16.24014 -15.64979 -15.47310 -15.17844 -14.83437 -14.72509 -14.48357 -14.15830 -14.09507 -13.33605 -13.03663 -12.95776 -12.89066 -12.88701 -12.66406 -12.51680 -12.47484 -12.22694 -12.05675 -11.67422 -11.50566 -11.43913 -11.29996 -11.08382 -11.03082 -10.86045 -10.62045 -10.54034 -10.49389 -10.40048 -10.10615 -9.58577 -9.27212 -8.86319 -8.66767 -8.57343 -8.30242 -7.90293 -6.27663 -4.35963 1.94457 2.65202 3.23895 3.29006 3.31475 3.57995 3.73979 3.86026 4.28225 4.46420 4.54696 4.57702 4.66617 4.74922 4.92361 5.00452 5.01115 5.13545 5.21175 5.24114 5.36858 5.44989 5.52750 5.57170 5.62714 5.65182 5.73290 5.78325 5.85036 5.86836 5.95337 6.01671 6.08871 6.13063 6.36000 6.49920 6.58175 6.81214 6.88696 6.92398 7.16239 7.22485 7.25444 7.37279 7.73739 7.93658 8.07464 8.15933 8.55125 8.67869 9.30843 9.39659 10.80137 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.002782 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.553506 B =10061.756635 C =10592.602772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.122 3.878 4 C 0.073 3.927 5 H 0.057 0.943 6 C -0.148 4.148 7 C -0.120 4.120 8 C -0.156 4.156 9 C 0.060 3.940 10 O -0.358 6.358 11 C 0.516 3.484 12 O -0.503 6.503 13 C 0.507 3.493 14 O -0.536 6.536 15 N -0.575 5.575 16 C 0.098 3.902 17 C -0.120 4.120 18 C 0.248 3.752 19 O -0.583 6.583 20 C -0.536 4.536 21 H 0.067 0.933 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.101 3.899 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.381 0.619 47 H 0.270 0.730 48 H 0.070 0.930 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 21.415 -2.364 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.328 5.328 3 C -0.001 4.001 4 C 0.013 3.987 5 H 0.075 0.925 6 C -0.186 4.186 7 C -0.158 4.158 8 C -0.194 4.194 9 C -0.017 4.017 10 O -0.276 6.276 11 C 0.299 3.701 12 O -0.377 6.377 13 C 0.290 3.710 14 O -0.416 6.416 15 N -0.307 5.307 16 C -0.024 4.024 17 C -0.158 4.158 18 C 0.207 3.793 19 O -0.392 6.392 20 C -0.574 4.574 21 H 0.085 0.915 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.020 4.020 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.231 0.769 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.303 21.474 -2.162 21.834 hybrid contribution -1.102 -0.655 0.094 1.286 sum 2.201 20.819 -2.067 21.037 Atomic orbital electron populations 1.22374 0.77966 1.03770 1.03372 1.47514 1.07791 1.04828 1.72671 1.21578 0.98659 0.85093 0.94770 1.22543 0.93812 0.88240 0.94063 0.92502 1.22146 1.01688 0.97154 0.97642 1.21553 1.00359 0.98300 0.95553 1.22194 1.00088 0.95908 1.01198 1.22553 0.98435 0.97125 0.83607 1.88144 1.72859 1.43573 1.23061 1.20236 0.87469 0.85002 0.77367 1.90673 1.13431 1.86690 1.46934 1.19633 0.87160 0.84314 0.79858 1.90602 1.13310 1.86135 1.51572 1.48695 1.09140 1.06477 1.66347 1.22648 0.79483 0.98445 1.01865 1.22810 0.99820 0.92923 1.00272 1.19519 0.87959 0.90656 0.81131 1.86134 1.44278 1.82623 1.26131 1.21475 1.11312 1.08857 1.15806 0.91500 1.25079 0.95281 0.97964 0.94984 1.69691 1.16447 1.39380 1.27882 0.86449 0.77760 0.82388 0.80241 1.20039 1.21102 1.19974 1.23194 0.98464 0.78034 1.02261 0.92464 0.92350 0.87264 0.88933 0.88810 0.90882 0.90649 0.91502 0.91961 0.90942 0.91087 0.88837 0.93613 0.89220 0.91551 0.90525 0.90420 0.76870 0.91962 0.91164 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 9.55 59.85 0.57 1.41 16 2 N -0.59 -8.42 2.83 -182.09 -0.51 -8.94 16 3 C 0.12 1.33 5.17 -4.04 -0.02 1.31 16 4 C 0.07 0.76 2.91 -26.68 -0.08 0.69 16 5 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 6 C -0.15 -1.17 5.42 -26.59 -0.14 -1.31 16 7 C -0.12 -0.88 6.03 -26.55 -0.16 -1.04 16 8 C -0.16 -1.31 6.14 -26.59 -0.16 -1.47 16 9 C 0.06 0.64 6.84 37.21 0.25 0.90 16 10 O -0.36 -4.91 9.18 -38.83 -0.36 -5.27 16 11 C 0.52 9.26 7.14 -11.59 -0.08 9.18 16 12 O -0.50 -9.61 12.74 1.90 0.02 -9.59 16 13 C 0.51 10.46 7.80 -11.59 -0.09 10.37 16 14 O -0.54 -11.55 13.47 5.49 0.07 -11.48 16 15 N -0.57 -12.53 3.33 -171.03 -0.57 -13.10 16 16 C 0.10 1.97 6.15 -2.53 -0.02 1.96 16 17 C -0.12 -2.54 6.23 -24.58 -0.15 -2.69 16 18 C 0.25 6.09 0.85 -89.94 -0.08 6.01 16 19 O -0.58 -14.83 13.07 -35.23 -0.46 -15.29 16 20 C -0.54 -14.08 8.13 -34.44 -0.28 -14.36 16 21 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 23 N -0.90 -23.71 10.96 55.43 0.61 -23.10 16 24 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.10 2.47 5.24 -3.06 -0.02 2.46 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 31 H 0.11 1.67 5.35 -51.93 -0.28 1.40 16 32 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.09 1.14 7.37 -51.93 -0.38 0.76 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 1.73 6.01 -51.93 -0.31 1.41 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.55 8.04 -51.93 -0.42 1.13 16 45 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 46 H 0.38 9.82 7.44 45.56 0.34 10.16 16 47 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 48 H 0.07 1.83 7.92 -51.93 -0.41 1.42 16 49 H 0.07 1.88 7.81 -51.93 -0.41 1.47 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -30.03 385.16 -8.28 -38.31 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -7.32 Total: 12.08 kcal Atomic # 6 Polarization: 15.67 SS G_CDS: -0.55 Total: 15.12 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.48 Total: -45.14 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.72 Total: -41.62 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.03 -8.28 -38.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118247483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.831 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds