Wall clock time and date at job start Tue Mar 31 2020 23:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 119.99842 * 2 1 4 4 C 1.53006 * 109.47011 * 269.99411 * 3 2 1 5 5 H 1.09007 * 109.47388 * 60.02388 * 4 3 2 6 6 C 1.53088 * 109.48436 * 180.02562 * 4 3 2 7 7 C 1.53177 * 109.16513 * 177.59080 * 6 4 3 8 8 C 1.53179 * 109.03792 * 303.02255 * 7 6 4 9 9 C 1.53096 * 109.15883 * 56.97980 * 8 7 6 10 10 O 1.42902 * 109.47900 * 300.00254 * 4 3 2 11 11 C 1.34778 * 120.00002 * 179.97438 * 2 1 3 12 12 O 1.21350 * 119.99995 * 183.67028 * 11 2 1 13 13 C 1.49449 * 120.00118 * 3.66457 * 11 2 1 14 14 O 1.21352 * 119.99716 * 354.20017 * 13 11 2 15 15 N 1.34772 * 119.99805 * 174.19550 * 13 11 2 16 16 C 1.47418 * 125.65120 * 359.94734 * 15 13 11 17 17 C 1.54911 * 104.83277 * 155.91523 * 16 15 13 18 18 C 1.55157 * 101.57864 * 37.01377 * 17 16 15 19 19 O 1.42907 * 110.72031 * 82.86226 * 18 17 16 20 20 C 1.50701 * 110.87176 * 206.06077 * 18 17 16 21 21 H 1.07998 * 119.99785 * 355.06651 * 20 18 17 22 22 C 1.37879 * 120.00169 * 175.06231 * 20 18 17 23 23 N 1.31515 * 119.99545 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99887 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47097 * 60.00358 * 24 22 20 26 26 H 1.48506 * 109.46751 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47216 * 300.00009 * 24 22 20 28 28 C 1.47025 * 125.64506 * 180.02562 * 15 13 11 29 29 H 1.09004 * 109.47300 * 264.00030 * 1 2 3 30 30 H 1.08997 * 109.47479 * 24.00344 * 1 2 3 31 31 H 1.09001 * 109.47198 * 144.00015 * 1 2 3 32 32 H 1.09000 * 109.47481 * 29.99015 * 3 2 1 33 33 H 1.08996 * 109.47479 * 150.00088 * 3 2 1 34 34 H 1.08999 * 109.52658 * 297.50123 * 6 4 3 35 35 H 1.09005 * 109.51815 * 57.68417 * 6 4 3 36 36 H 1.09003 * 109.54520 * 183.15548 * 7 6 4 37 37 H 1.09000 * 109.61123 * 62.93446 * 7 6 4 38 38 H 1.09001 * 109.52086 * 297.07279 * 8 7 6 39 39 H 1.09000 * 109.57033 * 176.91441 * 8 7 6 40 40 H 1.08998 * 109.47352 * 182.40940 * 9 8 7 41 41 H 1.08995 * 109.49263 * 62.38287 * 9 8 7 42 42 H 1.09000 * 110.36732 * 37.08239 * 16 15 13 43 43 H 1.09004 * 110.46688 * 274.80540 * 16 15 13 44 44 H 1.08995 * 111.00569 * 278.93817 * 17 16 15 45 45 H 1.08997 * 111.00559 * 155.08504 * 17 16 15 46 46 H 0.96701 * 113.99803 * 185.02206 * 19 18 17 47 47 H 0.97006 * 119.99340 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.88566 * 61.59725 * 28 15 13 49 49 H 1.08998 * 109.88141 * 300.42559 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 1.5001 1.8410 -1.9564 6 6 3.2185 3.0358 -1.4429 7 6 3.5225 3.4405 -2.8887 8 6 4.3084 2.3147 -3.5679 9 6 3.5002 1.0171 -3.4855 10 8 3.2248 0.7144 -2.1163 11 6 2.1389 -1.1672 0.0005 12 8 3.3505 -1.1683 0.0678 13 6 1.3939 -2.4602 -0.0816 14 8 0.1810 -2.4652 -0.0426 15 7 2.0692 -3.6206 -0.1991 16 6 3.5356 -3.7591 -0.2593 17 6 3.8180 -5.2026 0.2266 18 6 2.6204 -5.9769 -0.3848 19 8 2.8821 -6.3187 -1.7475 20 6 2.3107 -7.2112 0.4224 21 1 2.9471 -7.4894 1.2494 22 6 1.2146 -7.9853 0.1053 23 7 0.4398 -7.6466 -0.9020 24 14 0.8311 -9.5156 1.1054 25 1 0.6043 -9.1364 2.5232 26 1 -0.3901 -10.1662 0.5661 27 1 1.9737 -10.4604 1.0224 28 6 1.4652 -4.9580 -0.2900 29 1 -0.3634 -0.1074 1.0221 30 1 -0.3634 0.9387 -0.4180 31 1 -0.3634 -0.8314 -0.6040 32 1 1.6083 2.0284 0.5137 33 1 3.1498 1.1385 0.5138 34 1 2.6119 3.8072 -0.9686 35 1 4.1526 2.9168 -0.8938 36 1 4.1163 4.3545 -2.8943 37 1 2.5889 3.6088 -3.4255 38 1 5.2645 2.1812 -3.0618 39 1 4.4821 2.5699 -4.6133 40 1 4.0733 0.2032 -3.9295 41 1 2.5617 1.1381 -4.0264 42 1 4.0125 -3.0360 0.4025 43 1 3.8893 -3.6270 -1.2819 44 1 3.8044 -5.2582 1.3151 45 1 4.7643 -5.5703 -0.1699 46 1 2.1354 -6.7358 -2.1987 47 1 -0.3315 -8.1911 -1.1249 48 1 0.8398 -5.0226 -1.1804 49 1 0.8683 -5.1564 0.6001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118247483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:03 Heat of formation + Delta-G solvation = -170.162828 kcal Electronic energy + Delta-G solvation = -31578.944691 eV Core-core repulsion = 27312.770524 eV Total energy + Delta-G solvation = -4266.174167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93552 -40.54215 -39.74766 -38.88087 -37.02806 -35.87874 -34.52336 -34.24432 -32.90635 -31.87317 -29.75534 -28.82454 -28.07354 -27.14816 -25.56161 -24.67308 -23.78228 -22.39996 -21.44872 -21.18409 -20.27946 -19.11861 -18.30062 -18.02698 -17.54114 -17.26741 -17.12119 -16.84135 -16.81228 -16.27200 -15.90593 -15.65662 -15.31234 -15.17354 -14.81976 -14.79068 -14.59016 -14.18785 -14.05453 -13.90188 -13.62536 -13.56426 -13.50094 -13.34760 -13.30145 -12.91156 -12.83623 -12.60137 -12.37151 -12.30902 -12.22183 -12.19392 -11.95166 -11.89127 -11.71937 -11.28072 -11.15739 -10.68840 -10.44560 -10.35916 -10.17469 -9.88422 -9.57211 -8.26736 -6.42668 0.42364 1.28172 1.44173 1.44678 1.52623 2.17753 2.35453 2.43467 2.86655 2.99321 3.19811 3.76022 3.78867 3.91245 3.94811 4.02880 4.03950 4.12887 4.15604 4.28824 4.32166 4.35435 4.38138 4.47846 4.60912 4.66650 4.67866 4.73741 4.79481 4.87673 4.94510 4.95198 5.03208 5.07557 5.08348 5.13271 5.16804 5.18922 5.30432 5.39671 5.41231 5.47621 5.72110 5.96636 6.04319 6.34709 6.38759 6.61145 6.69210 6.98865 7.26469 7.34394 8.79568 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.002782 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.553506 B =10061.756635 C =10592.602772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.582 5.582 3 C 0.118 3.882 4 C 0.068 3.932 5 H 0.064 0.936 6 C -0.142 4.142 7 C -0.119 4.119 8 C -0.152 4.152 9 C 0.054 3.946 10 O -0.396 6.396 11 C 0.517 3.483 12 O -0.520 6.520 13 C 0.499 3.501 14 O -0.550 6.550 15 N -0.586 5.586 16 C 0.110 3.890 17 C -0.114 4.114 18 C 0.235 3.765 19 O -0.587 6.587 20 C -0.558 4.558 21 H 0.067 0.933 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.965 3.035 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.121 3.879 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.376 0.624 47 H 0.271 0.729 48 H 0.043 0.957 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 23.783 -1.754 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.315 5.315 3 C -0.003 4.003 4 C 0.009 3.991 5 H 0.082 0.918 6 C -0.180 4.180 7 C -0.156 4.156 8 C -0.189 4.189 9 C -0.023 4.023 10 O -0.315 6.315 11 C 0.299 3.701 12 O -0.396 6.396 13 C 0.284 3.716 14 O -0.430 6.430 15 N -0.318 5.318 16 C -0.012 4.012 17 C -0.151 4.151 18 C 0.194 3.806 19 O -0.395 6.395 20 C -0.596 4.596 21 H 0.085 0.915 22 C -0.174 4.174 23 N -0.553 5.553 24 Si 0.790 3.210 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.195 1.195 28 C -0.002 4.002 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.367 23.899 -1.553 24.184 hybrid contribution -1.198 -1.316 -0.130 1.784 sum 2.169 22.582 -1.683 22.749 Atomic orbital electron populations 1.22394 0.76825 1.04800 1.03447 1.47621 1.08622 1.04746 1.70471 1.21958 0.98523 0.84142 0.95727 1.22709 0.94242 0.88876 0.93233 0.91815 1.22114 1.01380 0.96256 0.98227 1.21578 1.00770 0.98219 0.95057 1.22149 0.99338 0.95180 1.02253 1.22648 0.98931 0.98083 0.82626 1.88093 1.73609 1.45503 1.24344 1.19702 0.87117 0.84984 0.78321 1.90656 1.13734 1.86766 1.48463 1.20370 0.87284 0.85150 0.78828 1.90606 1.14105 1.86682 1.51650 1.48743 1.09701 1.06043 1.67301 1.22592 0.78580 0.98131 1.01881 1.22809 0.98936 0.92783 1.00620 1.19705 0.89538 0.90670 0.80638 1.86125 1.44061 1.82601 1.26737 1.21759 1.11781 1.09821 1.16260 0.91457 1.25809 0.95084 1.00572 0.95903 1.69793 1.16574 1.40160 1.28781 0.85499 0.77588 0.79070 0.78826 1.19722 1.20796 1.19462 1.22710 0.97942 0.79935 0.99590 0.91870 0.88064 0.90340 0.84593 0.90078 0.88167 0.91475 0.89928 0.91174 0.91938 0.89613 0.89998 0.93164 0.87867 0.91964 0.89655 0.89231 0.77480 0.91948 0.93896 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 9.55 127.77 1.22 2.76 16 2 N -0.58 -15.56 2.83 -848.36 -2.40 -17.96 16 3 C 0.12 2.26 5.17 86.38 0.45 2.71 16 4 C 0.07 1.27 2.91 30.63 0.09 1.36 16 5 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 6 C -0.14 -1.80 5.42 30.68 0.17 -1.63 16 7 C -0.12 -1.39 6.03 30.71 0.19 -1.21 16 8 C -0.15 -2.31 6.14 30.69 0.19 -2.12 16 9 C 0.05 1.13 6.84 72.01 0.49 1.62 16 10 O -0.40 -10.59 9.18 -145.54 -1.34 -11.93 16 11 C 0.52 18.39 7.14 87.27 0.62 19.02 16 12 O -0.52 -19.73 12.74 0.19 0.00 -19.73 16 13 C 0.50 20.98 7.80 87.27 0.68 21.66 16 14 O -0.55 -24.30 13.47 -3.25 -0.04 -24.34 16 15 N -0.59 -26.19 3.33 -813.37 -2.71 -28.90 16 16 C 0.11 4.46 6.15 86.86 0.53 4.99 16 17 C -0.11 -4.80 6.23 31.99 0.20 -4.60 16 18 C 0.23 11.78 0.85 -10.35 -0.01 11.77 16 19 O -0.59 -30.64 13.07 -148.98 -1.95 -32.59 16 20 C -0.56 -29.71 8.13 25.60 0.21 -29.50 16 21 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 22 C 0.03 1.45 5.28 84.66 0.45 1.89 16 23 N -0.91 -49.53 10.96 21.45 0.24 -49.29 16 24 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 C 0.12 6.11 5.24 86.73 0.45 6.57 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.48 8.03 -2.39 -0.02 1.46 16 31 H 0.08 2.37 5.35 -2.49 -0.01 2.36 16 32 H 0.14 1.43 8.07 -2.39 -0.02 1.41 16 33 H 0.08 1.83 7.37 -2.39 -0.02 1.81 16 34 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 3.94 6.01 -2.39 -0.01 3.92 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.08 3.43 8.04 -2.39 -0.02 3.41 16 45 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 46 H 0.38 20.10 7.44 -74.06 -0.55 19.55 16 47 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 48 H 0.04 2.36 7.92 -2.39 -0.02 2.34 16 49 H 0.05 2.54 7.81 -2.39 -0.02 2.52 16 Total: -1.00 -66.60 385.16 0.16 -66.44 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: 0.40 Total: 38.86 kcal Atomic # 6 Polarization: 29.37 SS G_CDS: 5.93 Total: 35.30 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.87 Total: -96.15 kcal Atomic # 8 Polarization: -85.26 SS G_CDS: -3.33 Total: -88.59 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.60 0.16 -66.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118247483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.724 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds