Wall clock time and date at job start Tue Mar 31 2020 23:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99946 * 2 1 4 4 C 1.52997 * 109.47275 * 269.99826 * 3 2 1 5 5 H 1.08998 * 110.42959 * 54.29929 * 4 3 2 6 6 C 1.54267 * 110.48473 * 291.76100 * 4 3 2 7 7 C 1.53876 * 106.59650 * 217.70808 * 6 4 3 8 8 C 1.54274 * 106.59857 * 359.97438 * 7 6 4 9 9 C 1.54880 * 110.48742 * 176.84033 * 4 3 2 10 10 H 1.09007 * 110.75815 * 38.30716 * 9 4 3 11 11 O 1.42903 * 110.75924 * 274.93965 * 9 4 3 12 12 C 1.34773 * 120.00122 * 179.97438 * 2 1 3 13 13 O 1.21352 * 120.00417 * 183.85133 * 12 2 1 14 14 C 1.49456 * 120.00037 * 3.57866 * 12 2 1 15 15 O 1.21348 * 119.99479 * 354.41581 * 14 12 2 16 16 N 1.34773 * 120.00289 * 174.42023 * 14 12 2 17 17 C 1.47019 * 125.64822 * 0.02562 * 16 14 12 18 18 C 1.54325 * 107.27387 * 181.02441 * 17 16 14 19 19 C 1.55155 * 102.93852 * 22.19189 * 18 17 16 20 20 O 1.42901 * 111.00349 * 82.61435 * 19 18 17 21 21 C 1.50696 * 111.00293 * 206.42253 * 19 18 17 22 22 H 1.07999 * 120.00097 * 0.02562 * 21 19 18 23 23 C 1.37882 * 120.00299 * 180.02562 * 21 19 18 24 24 N 1.31512 * 119.99535 * 0.02562 * 23 21 19 25 25 Si 1.86802 * 120.00278 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.46930 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47008 * 120.00026 * 25 23 21 28 28 H 1.48498 * 109.46976 * 240.00005 * 25 23 21 29 29 C 1.47419 * 125.64872 * 179.71672 * 16 14 12 30 30 H 1.09007 * 109.47192 * 263.99018 * 1 2 3 31 31 H 1.09001 * 109.47324 * 23.99113 * 1 2 3 32 32 H 1.08999 * 109.47245 * 143.99232 * 1 2 3 33 33 H 1.08999 * 109.46958 * 30.00532 * 3 2 1 34 34 H 1.09006 * 109.46697 * 149.99774 * 3 2 1 35 35 H 1.08992 * 110.03671 * 336.99406 * 6 4 3 36 36 H 1.09007 * 110.03218 * 98.42980 * 6 4 3 37 37 H 1.08998 * 110.03463 * 119.28379 * 7 6 4 38 38 H 1.09003 * 110.03352 * 240.67107 * 7 6 4 39 39 H 1.08998 * 110.48181 * 142.28197 * 8 7 6 40 40 H 1.08990 * 110.48784 * 264.80113 * 8 7 6 41 41 H 0.96693 * 114.00228 * 180.02562 * 11 9 4 42 42 H 1.09007 * 109.88495 * 300.44290 * 17 16 14 43 43 H 1.09004 * 109.88412 * 61.44848 * 17 16 14 44 44 H 1.09001 * 110.72235 * 140.55830 * 18 17 16 45 45 H 1.08998 * 110.71579 * 263.83241 * 18 17 16 46 46 H 0.96703 * 114.00115 * 180.02562 * 20 19 18 47 47 H 0.97004 * 120.00315 * 180.02562 * 24 23 21 48 48 H 1.09005 * 110.36772 * 274.74465 * 29 16 14 49 49 H 1.09000 * 110.37117 * 37.06968 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5166 1.7483 -1.9999 6 6 3.4523 0.7578 -2.1300 7 6 4.3468 1.6318 -3.0266 8 6 3.8588 3.0850 -2.8530 9 6 3.1565 3.0897 -1.4706 10 1 3.8884 3.1664 -0.6664 11 8 2.2000 4.1483 -1.3893 12 6 2.1389 -1.1671 0.0005 13 8 3.3503 -1.1684 0.0711 14 6 1.3938 -2.4603 -0.0797 15 8 0.1809 -2.4648 -0.0431 16 7 2.0690 -3.6212 -0.1926 17 6 3.5316 -3.7599 -0.2476 18 6 3.8438 -5.2632 -0.4034 19 6 2.5273 -5.8319 -0.9958 20 8 2.4784 -5.6415 -2.4112 21 6 2.3610 -7.2876 -0.6434 22 1 3.1116 -7.7888 -0.0504 23 6 1.2505 -7.9797 -1.0782 24 7 0.3368 -7.3694 -1.8008 25 14 1.0440 -9.7840 -0.6408 26 1 2.2017 -10.2312 0.1746 27 1 -0.2080 -9.9646 0.1370 28 1 0.9739 -10.5902 -1.8859 29 6 1.4635 -4.9628 -0.2750 30 1 -0.3634 -0.1076 1.0221 31 1 -0.3634 0.9389 -0.4178 32 1 -0.3634 -0.8313 -0.6041 33 1 1.6084 2.0283 0.5139 34 1 3.1499 1.1384 0.5139 35 1 4.0585 0.2486 -1.3809 36 1 2.9159 0.0277 -2.7362 37 1 5.3870 1.5468 -2.7125 38 1 4.2451 1.3253 -4.0677 39 1 4.7037 3.7737 -2.8542 40 1 3.1529 3.3471 -3.6410 41 1 2.5902 5.0329 -1.4036 42 1 3.9244 -3.2092 -1.1024 43 1 3.9749 -3.3803 0.6730 44 1 4.6743 -5.4152 -1.0928 45 1 4.0576 -5.7150 0.5652 46 1 1.6734 -5.9808 -2.8261 47 1 -0.4447 -7.8561 -2.1064 48 1 1.2659 -5.3518 0.7239 49 1 0.5435 -4.9287 -0.8585 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118250153.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:00 Heat of formation + Delta-G solvation = -158.359844 kcal Electronic energy + Delta-G solvation = -31474.534903 eV Core-core repulsion = 27208.872552 eV Total energy + Delta-G solvation = -4265.662351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64271 -39.23740 -38.23534 -37.24567 -35.87450 -35.10447 -34.14276 -32.18178 -30.66395 -30.23320 -27.95216 -27.81347 -26.81792 -26.17868 -24.98740 -23.09283 -21.48165 -20.96775 -19.92446 -19.64757 -18.89135 -17.73108 -17.28149 -16.76641 -16.71224 -16.27451 -15.46204 -15.28656 -15.11072 -15.04753 -14.59917 -14.30394 -14.11586 -13.96627 -13.38147 -13.16534 -13.03960 -12.91620 -12.77506 -12.59779 -12.48024 -12.26040 -12.21458 -11.84304 -11.64806 -11.52193 -11.38572 -11.09061 -11.01269 -10.91898 -10.75799 -10.66659 -10.55562 -10.48549 -10.41697 -10.20234 -10.19749 -9.41727 -8.96285 -8.70812 -8.64059 -8.42704 -7.86032 -6.32977 -4.42107 1.81954 2.59926 3.17681 3.26802 3.30310 3.58986 3.74394 3.90288 4.23387 4.33166 4.39484 4.57499 4.71278 4.94672 4.98956 5.04778 5.17862 5.25691 5.31322 5.35059 5.41581 5.49182 5.59048 5.61919 5.72060 5.75858 5.80037 5.86985 5.92155 5.98758 6.04602 6.10436 6.15793 6.26910 6.33843 6.46646 6.50657 6.72317 6.79876 6.85772 7.15087 7.19132 7.29545 7.34590 7.70855 7.82717 7.96967 8.08066 8.47287 8.62105 9.27796 9.43151 10.74388 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022416 B = 0.002709 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.804327 B =10332.817639 C =10816.190025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.591 5.591 3 C 0.122 3.878 4 C -0.098 4.098 5 H 0.084 0.916 6 C -0.127 4.127 7 C -0.121 4.121 8 C -0.154 4.154 9 C 0.103 3.897 10 H 0.067 0.933 11 O -0.563 6.563 12 C 0.510 3.490 13 O -0.517 6.517 14 C 0.507 3.493 15 O -0.533 6.533 16 N -0.573 5.573 17 C 0.112 3.888 18 C -0.122 4.122 19 C 0.249 3.751 20 O -0.582 6.582 21 C -0.536 4.536 22 H 0.069 0.931 23 C 0.070 3.930 24 N -0.896 5.896 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.090 3.910 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.377 0.623 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.386 0.614 47 H 0.271 0.729 48 H 0.067 0.933 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 19.748 1.221 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.325 5.325 3 C -0.001 4.001 4 C -0.118 4.118 5 H 0.103 0.897 6 C -0.164 4.164 7 C -0.159 4.159 8 C -0.192 4.192 9 C 0.044 3.956 10 H 0.085 0.915 11 O -0.369 6.369 12 C 0.293 3.707 13 O -0.393 6.393 14 C 0.290 3.710 15 O -0.413 6.413 16 N -0.304 5.304 17 C -0.010 4.010 18 C -0.160 4.160 19 C 0.209 3.791 20 O -0.393 6.393 21 C -0.574 4.574 22 H 0.087 0.913 23 C -0.133 4.133 24 N -0.535 5.535 25 Si 0.733 3.267 26 H -0.195 1.195 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.031 4.031 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.224 0.776 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.238 0.762 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.713 19.518 1.329 20.123 hybrid contribution -0.482 -0.621 0.043 0.787 sum 4.232 18.897 1.372 19.414 Atomic orbital electron populations 1.22400 0.77697 1.04103 1.03412 1.47655 1.08185 1.04910 1.71702 1.21616 0.98072 0.84297 0.96098 1.22356 0.99846 0.92757 0.96803 0.89723 1.22343 0.97243 0.97423 0.99439 1.22026 0.99614 0.93975 1.00286 1.23041 1.00327 0.97717 0.98145 1.22836 0.89843 0.86932 0.95993 0.91516 1.86513 1.36195 1.17199 1.96955 1.20372 0.87527 0.85278 0.77479 1.90666 1.13518 1.87110 1.48027 1.19601 0.87212 0.84240 0.79960 1.90617 1.13221 1.86052 1.51395 1.48639 1.08933 1.06483 1.66351 1.22128 0.79519 0.97949 1.01420 1.22720 0.99622 0.92547 1.01113 1.19637 0.88057 0.91989 0.79465 1.86086 1.47331 1.84500 1.21350 1.21547 1.06847 0.94533 1.34469 0.91285 1.25097 0.95017 0.99222 0.93966 1.69567 1.10895 1.37092 1.35949 0.86318 0.78212 0.83849 0.78361 1.19537 1.20752 1.20717 1.23544 1.00209 0.77973 1.01362 0.92440 0.91906 0.87203 0.89899 0.89571 0.89148 0.91782 0.91594 0.91666 0.91578 0.90802 0.77642 0.91437 0.91590 0.90547 0.90442 0.76202 0.91893 0.91458 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 9.55 59.85 0.57 1.43 16 2 N -0.59 -8.29 2.83 -182.08 -0.52 -8.80 16 3 C 0.12 1.39 4.93 -4.04 -0.02 1.37 16 4 C -0.10 -1.07 2.82 -88.97 -0.25 -1.32 16 5 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.13 -1.53 5.47 -25.61 -0.14 -1.67 16 7 C -0.12 -1.18 6.80 -25.61 -0.17 -1.35 16 8 C -0.15 -1.26 6.56 -24.98 -0.16 -1.43 16 9 C 0.10 0.90 3.71 -24.65 -0.09 0.81 16 10 H 0.07 0.52 8.06 -51.92 -0.42 0.10 16 11 O -0.56 -4.79 13.45 -35.23 -0.47 -5.26 16 12 C 0.51 8.69 7.08 -11.58 -0.08 8.61 16 13 O -0.52 -9.05 11.45 5.49 0.06 -8.99 16 14 C 0.51 10.13 7.80 -11.58 -0.09 10.04 16 15 O -0.53 -11.29 13.39 5.50 0.07 -11.21 16 16 N -0.57 -12.03 3.32 -170.88 -0.57 -12.60 16 17 C 0.11 2.16 5.49 -3.07 -0.02 2.14 16 18 C -0.12 -2.47 6.12 -24.90 -0.15 -2.63 16 19 C 0.25 5.99 0.89 -89.51 -0.08 5.91 16 20 O -0.58 -14.87 13.19 -35.23 -0.46 -15.34 16 21 C -0.54 -13.69 8.25 -34.44 -0.28 -13.98 16 22 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 23 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 24 N -0.90 -23.37 10.72 55.43 0.59 -22.78 16 25 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 C 0.09 2.12 5.65 -2.41 -0.01 2.10 16 30 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.66 8.03 -51.93 -0.42 0.24 16 32 H 0.11 1.70 5.35 -51.94 -0.28 1.43 16 33 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.09 1.02 7.24 -51.93 -0.38 0.64 16 35 H 0.09 1.24 5.61 -51.93 -0.29 0.95 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.38 1.56 9.12 45.56 0.42 1.98 16 42 H 0.07 1.30 7.72 -51.93 -0.40 0.90 16 43 H 0.07 1.17 7.57 -51.93 -0.39 0.78 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.08 1.47 8.01 -51.93 -0.42 1.05 16 46 H 0.39 10.14 6.93 45.56 0.32 10.46 16 47 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 48 H 0.07 1.60 8.04 -51.93 -0.42 1.18 16 49 H 0.09 2.24 7.64 -51.93 -0.40 1.84 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -28.91 384.24 -8.02 -36.93 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -6.42 Total: 15.54 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -1.08 Total: 11.72 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.49 Total: -44.18 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.80 Total: -40.80 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.91 -8.02 -36.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118250153.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.427 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds