Wall clock time and date at job start Wed Apr 1 2020 00:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99832 * 2 1 4 4 C 1.52997 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.58568 * 307.22914 * 4 3 2 6 6 C 1.53191 * 109.58496 * 186.80844 * 4 3 2 7 7 C 1.53042 * 109.31206 * 185.57748 * 6 4 3 8 8 C 1.53036 * 109.53967 * 61.36192 * 7 6 4 9 9 C 1.53623 * 109.24478 * 298.51151 * 8 7 6 10 10 N 1.46924 * 108.54105 * 54.85473 * 9 8 7 11 11 C 1.34775 * 120.63311 * 126.37139 * 10 9 8 12 12 O 1.21351 * 120.00288 * 187.71779 * 11 10 9 13 13 C 1.49453 * 119.99781 * 7.71413 * 11 10 9 14 14 O 1.21344 * 120.00080 * 356.80220 * 13 11 10 15 15 N 1.34778 * 120.00018 * 176.80417 * 13 11 10 16 16 C 1.47022 * 125.64955 * 359.96915 * 15 13 11 17 17 C 1.54316 * 107.27356 * 178.98873 * 16 15 13 18 18 C 1.55153 * 102.94310 * 337.81229 * 17 16 15 19 19 O 1.42900 * 111.00723 * 277.42438 * 18 17 16 20 20 C 1.50696 * 111.00676 * 153.61195 * 18 17 16 21 21 H 1.08002 * 120.00210 * 3.17648 * 20 18 17 22 22 C 1.37878 * 120.00281 * 183.18287 * 20 18 17 23 23 N 1.31519 * 119.99886 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 120.00178 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47051 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47110 * 119.99728 * 24 22 20 27 27 H 1.48495 * 109.47244 * 239.99301 * 24 22 20 28 28 C 1.47420 * 125.65038 * 180.02562 * 15 13 11 29 29 H 1.09000 * 109.46819 * 299.99489 * 1 2 3 30 30 H 1.08995 * 109.47703 * 59.99971 * 1 2 3 31 31 H 1.08998 * 109.47024 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46868 * 60.00359 * 3 2 1 33 33 H 1.09001 * 109.46965 * 300.00222 * 3 2 1 34 34 H 1.09003 * 109.49596 * 305.52462 * 6 4 3 35 35 H 1.09000 * 109.50390 * 65.59310 * 6 4 3 36 36 H 1.08997 * 109.46190 * 181.38592 * 7 6 4 37 37 H 1.09004 * 109.45864 * 301.34010 * 7 6 4 38 38 H 1.09001 * 109.49847 * 58.58529 * 8 7 6 39 39 H 1.09002 * 109.50232 * 178.68233 * 8 7 6 40 40 H 1.08996 * 109.74204 * 295.12271 * 9 8 7 41 41 H 1.09000 * 109.66671 * 174.54478 * 9 8 7 42 42 H 1.09003 * 109.88307 * 59.57344 * 16 15 13 43 43 H 1.09005 * 109.88603 * 298.41041 * 16 15 13 44 44 H 1.08997 * 110.72841 * 219.44459 * 17 16 15 45 45 H 1.09003 * 110.71760 * 96.17000 * 17 16 15 46 46 H 0.96698 * 114.00830 * 179.97438 * 19 18 17 47 47 H 0.96999 * 119.99816 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.36863 * 85.23346 * 28 15 13 49 49 H 1.09005 * 110.36356 * 322.91924 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8509 0.5364 0.8168 6 6 4.1605 2.5728 0.1705 7 6 5.6806 2.4641 0.0298 8 6 6.0296 1.9460 -1.3672 9 6 5.4260 0.5457 -1.5534 10 7 3.9842 0.6184 -1.2799 11 6 3.0904 0.1689 -2.1830 12 8 1.9046 0.3601 -2.0102 13 6 3.5598 -0.5650 -3.3974 14 8 4.7479 -0.7056 -3.5999 15 7 2.6634 -1.0706 -4.2677 16 6 1.2015 -0.9740 -4.1451 17 6 0.5911 -1.6712 -5.3791 18 6 1.7483 -1.6261 -6.4116 19 8 1.7903 -0.3633 -7.0792 20 6 1.6316 -2.7545 -7.4035 21 1 0.7871 -3.4264 -7.3602 22 6 2.6029 -2.9294 -8.3663 23 7 3.6311 -2.1110 -8.4194 24 14 2.4585 -4.3286 -9.5954 25 1 1.2191 -5.1002 -9.3237 26 1 2.4053 -3.7745 -10.9723 27 1 3.6364 -5.2236 -9.4673 28 6 2.9864 -1.8132 -5.4996 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.7714 3.2439 -0.5953 35 1 3.9131 2.9642 1.1572 36 1 6.1299 3.4464 0.1756 37 1 6.0662 1.7737 0.7801 38 1 5.6229 2.6230 -2.1184 39 1 7.1130 1.8911 -1.4748 40 1 5.8946 -0.1524 -0.8599 41 1 5.5871 0.2100 -2.5778 42 1 0.8997 0.0732 -4.1239 43 1 0.8718 -1.4753 -3.2351 44 1 -0.2743 -1.1190 -5.7454 45 1 0.3221 -2.7015 -5.1461 46 1 2.4979 -0.2877 -7.7339 47 1 4.3142 -2.2338 -9.0970 48 1 3.1376 -2.8695 -5.2772 49 1 3.8738 -1.3938 -5.9737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118250964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:06 Heat of formation + Delta-G solvation = -124.036075 kcal Electronic energy + Delta-G solvation = -32365.738528 eV Core-core repulsion = 28101.564567 eV Total energy + Delta-G solvation = -4264.173961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88084 -39.07701 -37.55059 -37.22042 -36.85079 -34.35009 -32.73006 -32.21394 -32.09350 -30.23347 -27.95281 -27.57725 -26.28054 -25.46724 -24.35253 -23.62160 -22.54404 -21.38586 -20.40955 -19.64532 -18.71303 -17.26308 -16.74184 -16.52499 -16.30060 -16.02004 -15.58124 -15.45676 -15.06110 -14.94836 -14.59520 -14.44630 -14.18092 -13.97499 -13.67383 -13.25139 -13.12155 -12.98957 -12.85687 -12.63069 -12.40026 -12.20085 -11.96494 -11.64377 -11.55568 -11.44155 -11.23014 -11.08002 -11.06086 -11.00463 -10.80341 -10.72495 -10.54903 -10.48155 -10.20863 -9.90848 -9.40101 -9.34987 -8.74058 -8.53923 -8.44847 -8.34697 -7.87287 -6.31977 -4.41552 1.92243 2.65471 3.18179 3.27342 3.30874 3.66514 3.80725 3.90630 4.24278 4.51783 4.72428 4.75335 4.83185 4.96092 5.06813 5.12028 5.17753 5.27923 5.42888 5.49613 5.50935 5.57364 5.65157 5.66255 5.79406 5.80881 5.83636 5.85830 5.86857 5.88355 5.97890 6.06625 6.20228 6.25061 6.35367 6.52163 6.58652 6.73575 6.83855 6.94185 7.19423 7.30326 7.35996 7.40675 7.71132 7.90736 7.99638 8.19785 8.53629 8.63234 9.28091 9.39322 10.75130 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.003368 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.581214 B = 8312.091167 C = 9434.443157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.373 6.373 3 C 0.072 3.928 4 C 0.147 3.853 5 H 0.079 0.921 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.134 4.134 9 C 0.055 3.945 10 N -0.585 5.585 11 C 0.511 3.489 12 O -0.491 6.491 13 C 0.510 3.490 14 O -0.532 6.532 15 N -0.570 5.570 16 C 0.114 3.886 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.582 6.582 20 C -0.537 4.537 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.894 5.894 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.091 3.909 29 H 0.026 0.974 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.159 0.841 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.384 0.616 47 H 0.270 0.730 48 H 0.067 0.933 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 7.853 16.717 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C -0.005 4.005 4 C 0.044 3.956 5 H 0.096 0.904 6 C -0.165 4.165 7 C -0.157 4.157 8 C -0.172 4.172 9 C -0.066 4.066 10 N -0.320 5.320 11 C 0.295 3.705 12 O -0.365 6.365 13 C 0.294 3.706 14 O -0.413 6.413 15 N -0.300 5.300 16 C -0.008 4.008 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.392 6.392 20 C -0.575 4.575 21 H 0.087 0.913 22 C -0.133 4.133 23 N -0.533 5.533 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.030 4.030 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.175 0.825 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.235 0.765 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.303 7.880 17.024 18.761 hybrid contribution 0.445 -0.611 -0.787 1.091 sum 0.748 7.269 16.237 17.805 Atomic orbital electron populations 1.22489 0.81503 1.01890 0.99104 1.87871 1.19373 1.26963 1.94944 1.22527 0.91323 0.86709 0.99923 1.21299 0.93625 0.94714 0.86012 0.90351 1.21874 0.96270 0.95864 1.02453 1.21527 0.95029 1.01352 0.97768 1.22007 1.00963 0.97389 0.96866 1.23285 0.78077 0.96372 1.08847 1.47797 1.07385 1.60464 1.16382 1.20089 0.86008 0.80394 0.84055 1.90692 1.16255 1.55070 1.74523 1.19799 0.85733 0.81018 0.84054 1.90274 1.15500 1.60013 1.75552 1.48642 1.07408 1.51070 1.22922 1.22120 0.78999 1.01213 0.98503 1.22720 0.99121 1.00148 0.94029 1.19612 0.87857 0.83396 0.88319 1.86099 1.58389 1.36421 1.58256 1.21533 1.08536 1.13292 1.14156 0.91313 1.25094 0.94462 0.96405 0.97305 1.69656 1.11118 1.37505 1.35068 0.86333 0.78256 0.81597 0.80640 1.19548 1.20727 1.20745 1.23475 1.02990 0.94698 0.81791 0.95573 0.93688 0.90537 0.94582 0.90818 0.91167 0.90696 0.91677 0.91790 0.91614 0.90721 0.92150 0.82523 0.91206 0.91743 0.90617 0.90469 0.76524 0.91947 0.91520 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.52 101.05 1.06 1.63 16 2 O -0.37 -5.52 8.22 -60.52 -0.50 -6.02 16 3 C 0.07 0.91 4.51 37.16 0.17 1.08 16 4 C 0.15 1.75 3.17 -67.60 -0.21 1.54 16 5 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.13 -1.17 5.37 -26.61 -0.14 -1.31 16 7 C -0.12 -1.04 5.88 -26.69 -0.16 -1.19 16 8 C -0.13 -1.42 6.10 -26.39 -0.16 -1.58 16 9 C 0.06 0.74 6.15 -3.49 -0.02 0.72 16 10 N -0.58 -8.54 2.97 -165.46 -0.49 -9.03 16 11 C 0.51 8.96 7.39 -11.58 -0.09 8.87 16 12 O -0.49 -8.63 7.63 -19.79 -0.15 -8.78 16 13 C 0.51 10.30 7.85 -11.58 -0.09 10.21 16 14 O -0.53 -11.29 13.28 5.50 0.07 -11.22 16 15 N -0.57 -12.03 3.33 -171.03 -0.57 -12.60 16 16 C 0.11 2.20 5.49 -3.07 -0.02 2.18 16 17 C -0.12 -2.48 6.13 -24.90 -0.15 -2.63 16 18 C 0.25 5.97 0.89 -89.63 -0.08 5.89 16 19 O -0.58 -14.79 13.19 -35.23 -0.46 -15.25 16 20 C -0.54 -13.74 8.26 -34.44 -0.28 -14.02 16 21 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 22 C 0.07 1.80 5.27 -17.82 -0.09 1.70 16 23 N -0.89 -23.32 10.68 55.43 0.59 -22.72 16 24 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C 0.09 2.15 5.51 -2.54 -0.01 2.14 16 29 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.58 7.83 -51.93 -0.41 0.17 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 1.05 6.39 -51.93 -0.33 0.72 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.16 2.57 3.99 -56.37 -0.22 2.35 16 42 H 0.07 1.35 7.51 -51.93 -0.39 0.96 16 43 H 0.06 1.16 7.76 -51.93 -0.40 0.75 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 45 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 46 H 0.38 9.99 7.18 45.56 0.33 10.32 16 47 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 48 H 0.07 1.60 8.03 -51.93 -0.42 1.19 16 49 H 0.09 2.31 7.48 -51.93 -0.39 1.92 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -28.08 376.61 -8.40 -36.49 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.27 Total: 13.25 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -0.28 Total: 15.22 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.47 Total: -44.36 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.04 Total: -41.27 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.08 -8.40 -36.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118250964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.548 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds