Wall clock time and date at job start Wed Apr 1 2020 00:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99832 * 2 1 4 4 C 1.52997 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.58568 * 307.22914 * 4 3 2 6 6 C 1.53191 * 109.58496 * 186.80844 * 4 3 2 7 7 C 1.53042 * 109.31206 * 185.57748 * 6 4 3 8 8 C 1.53036 * 109.53967 * 61.36192 * 7 6 4 9 9 C 1.53623 * 109.24478 * 298.51151 * 8 7 6 10 10 N 1.46924 * 108.54105 * 54.85473 * 9 8 7 11 11 C 1.34775 * 120.63311 * 126.37139 * 10 9 8 12 12 O 1.21351 * 120.00288 * 187.71779 * 11 10 9 13 13 C 1.49453 * 119.99781 * 7.71413 * 11 10 9 14 14 O 1.21344 * 120.00080 * 356.80220 * 13 11 10 15 15 N 1.34778 * 120.00018 * 176.80417 * 13 11 10 16 16 C 1.47022 * 125.64955 * 359.96915 * 15 13 11 17 17 C 1.54316 * 107.27356 * 178.98873 * 16 15 13 18 18 C 1.55153 * 102.94310 * 337.81229 * 17 16 15 19 19 O 1.42900 * 111.00723 * 277.42438 * 18 17 16 20 20 C 1.50696 * 111.00676 * 153.61195 * 18 17 16 21 21 H 1.08002 * 120.00210 * 3.17648 * 20 18 17 22 22 C 1.37878 * 120.00281 * 183.18287 * 20 18 17 23 23 N 1.31519 * 119.99886 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 120.00178 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47051 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47110 * 119.99728 * 24 22 20 27 27 H 1.48495 * 109.47244 * 239.99301 * 24 22 20 28 28 C 1.47420 * 125.65038 * 180.02562 * 15 13 11 29 29 H 1.09000 * 109.46819 * 299.99489 * 1 2 3 30 30 H 1.08995 * 109.47703 * 59.99971 * 1 2 3 31 31 H 1.08998 * 109.47024 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46868 * 60.00359 * 3 2 1 33 33 H 1.09001 * 109.46965 * 300.00222 * 3 2 1 34 34 H 1.09003 * 109.49596 * 305.52462 * 6 4 3 35 35 H 1.09000 * 109.50390 * 65.59310 * 6 4 3 36 36 H 1.08997 * 109.46190 * 181.38592 * 7 6 4 37 37 H 1.09004 * 109.45864 * 301.34010 * 7 6 4 38 38 H 1.09001 * 109.49847 * 58.58529 * 8 7 6 39 39 H 1.09002 * 109.50232 * 178.68233 * 8 7 6 40 40 H 1.08996 * 109.74204 * 295.12271 * 9 8 7 41 41 H 1.09000 * 109.66671 * 174.54478 * 9 8 7 42 42 H 1.09003 * 109.88307 * 59.57344 * 16 15 13 43 43 H 1.09005 * 109.88603 * 298.41041 * 16 15 13 44 44 H 1.08997 * 110.72841 * 219.44459 * 17 16 15 45 45 H 1.09003 * 110.71760 * 96.17000 * 17 16 15 46 46 H 0.96698 * 114.00830 * 179.97438 * 19 18 17 47 47 H 0.96999 * 119.99816 * 180.02562 * 23 22 20 48 48 H 1.08999 * 110.36863 * 85.23346 * 28 15 13 49 49 H 1.09005 * 110.36356 * 322.91924 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8509 0.5364 0.8168 6 6 4.1605 2.5728 0.1705 7 6 5.6806 2.4641 0.0298 8 6 6.0296 1.9460 -1.3672 9 6 5.4260 0.5457 -1.5534 10 7 3.9842 0.6184 -1.2799 11 6 3.0904 0.1689 -2.1830 12 8 1.9046 0.3601 -2.0102 13 6 3.5598 -0.5650 -3.3974 14 8 4.7479 -0.7056 -3.5999 15 7 2.6634 -1.0706 -4.2677 16 6 1.2015 -0.9740 -4.1451 17 6 0.5911 -1.6712 -5.3791 18 6 1.7483 -1.6261 -6.4116 19 8 1.7903 -0.3633 -7.0792 20 6 1.6316 -2.7545 -7.4035 21 1 0.7871 -3.4264 -7.3602 22 6 2.6029 -2.9294 -8.3663 23 7 3.6311 -2.1110 -8.4194 24 14 2.4585 -4.3286 -9.5954 25 1 1.2191 -5.1002 -9.3237 26 1 2.4053 -3.7745 -10.9723 27 1 3.6364 -5.2236 -9.4673 28 6 2.9864 -1.8132 -5.4996 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.7714 3.2439 -0.5953 35 1 3.9131 2.9642 1.1572 36 1 6.1299 3.4464 0.1756 37 1 6.0662 1.7737 0.7801 38 1 5.6229 2.6230 -2.1184 39 1 7.1130 1.8911 -1.4748 40 1 5.8946 -0.1524 -0.8599 41 1 5.5871 0.2100 -2.5778 42 1 0.8997 0.0732 -4.1239 43 1 0.8718 -1.4753 -3.2351 44 1 -0.2743 -1.1190 -5.7454 45 1 0.3221 -2.7015 -5.1461 46 1 2.4979 -0.2877 -7.7339 47 1 4.3142 -2.2338 -9.0970 48 1 3.1376 -2.8695 -5.2772 49 1 3.8738 -1.3938 -5.9737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118250964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:05 Heat of formation + Delta-G solvation = -142.824310 kcal Electronic energy + Delta-G solvation = -32366.553247 eV Core-core repulsion = 28101.564567 eV Total energy + Delta-G solvation = -4264.988680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19495 -40.55750 -39.10978 -38.42921 -38.00539 -36.14259 -34.20450 -33.77442 -33.04767 -31.95797 -29.72157 -28.61254 -27.70386 -26.83711 -25.55669 -24.86769 -23.92845 -22.52736 -21.58413 -21.34664 -20.09936 -19.18171 -18.17189 -17.86534 -17.39520 -17.22115 -17.03380 -16.96525 -16.73245 -16.18631 -15.92649 -15.77711 -15.40095 -15.08602 -14.91693 -14.68926 -14.67617 -14.40831 -14.15062 -14.00171 -13.66452 -13.54300 -13.39423 -13.27993 -13.00295 -12.83994 -12.53425 -12.48619 -12.34358 -12.21361 -12.17345 -12.11694 -11.94144 -11.81162 -11.59230 -11.30417 -11.02619 -10.67024 -10.42493 -10.39564 -9.78182 -9.69396 -9.50768 -8.26592 -6.43648 0.44681 1.29802 1.42641 1.45940 1.56545 2.21332 2.35629 2.44621 2.93813 2.99480 3.22397 3.75440 3.77287 3.93639 4.03028 4.06724 4.15472 4.17067 4.24721 4.27254 4.32809 4.39590 4.51565 4.62398 4.66314 4.69407 4.71872 4.83620 4.87741 4.92859 4.94978 4.96376 4.99248 5.03493 5.06646 5.14598 5.16725 5.31373 5.33879 5.42956 5.43632 5.57420 5.74274 6.01480 6.10984 6.37298 6.43555 6.63337 6.75831 7.04165 7.28039 7.35470 8.79339 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.003368 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.581214 B = 8312.091167 C = 9434.443157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.399 6.399 3 C 0.071 3.929 4 C 0.142 3.858 5 H 0.088 0.912 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.129 4.129 9 C 0.052 3.948 10 N -0.578 5.578 11 C 0.510 3.490 12 O -0.494 6.494 13 C 0.500 3.500 14 O -0.550 6.550 15 N -0.580 5.580 16 C 0.126 3.874 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.589 6.589 20 C -0.556 4.556 21 H 0.070 0.930 22 C 0.028 3.972 23 N -0.916 5.916 24 Si 0.966 3.034 25 H -0.265 1.265 26 H -0.280 1.280 27 H -0.281 1.281 28 C 0.107 3.893 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.377 0.623 47 H 0.271 0.729 48 H 0.054 0.946 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 8.446 18.982 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.318 6.318 3 C -0.005 4.005 4 C 0.040 3.960 5 H 0.106 0.894 6 C -0.158 4.158 7 C -0.152 4.152 8 C -0.168 4.168 9 C -0.068 4.068 10 N -0.313 5.313 11 C 0.291 3.709 12 O -0.369 6.369 13 C 0.285 3.715 14 O -0.432 6.432 15 N -0.311 5.311 16 C 0.004 3.996 17 C -0.153 4.153 18 C 0.194 3.806 19 O -0.397 6.397 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.173 4.173 23 N -0.555 5.555 24 Si 0.791 3.209 25 H -0.189 1.189 26 H -0.205 1.205 27 H -0.207 1.207 28 C -0.015 4.015 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.143 0.857 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.020 8.496 19.331 21.115 hybrid contribution 0.591 -0.764 -1.442 1.736 sum 0.612 7.732 17.889 19.498 Atomic orbital electron populations 1.22560 0.80505 1.02369 0.99624 1.87830 1.20640 1.28253 1.95074 1.22589 0.91592 0.85998 1.00320 1.21632 0.93579 0.96413 0.84355 0.89370 1.21889 0.96351 0.93728 1.03865 1.21526 0.94707 1.02660 0.96264 1.21974 1.01548 0.95039 0.98190 1.23187 0.77811 0.98689 1.07159 1.47901 1.07399 1.59306 1.16702 1.19615 0.86435 0.81010 0.83793 1.90701 1.16217 1.55506 1.74479 1.20587 0.85459 0.80704 0.84764 1.90317 1.16247 1.60348 1.76262 1.48705 1.08392 1.51484 1.22545 1.22077 0.77812 1.01130 0.98605 1.22722 0.98120 1.01324 0.93149 1.19836 0.89491 0.82534 0.88773 1.86091 1.58060 1.37404 1.58194 1.21809 1.08758 1.13890 1.14940 0.91178 1.25815 0.94123 0.98464 0.98868 1.69762 1.11551 1.38671 1.35519 0.85382 0.78234 0.78884 0.78380 1.18905 1.20545 1.20702 1.23025 1.01599 0.93945 0.82955 0.93295 0.94845 0.90174 0.91622 0.92853 0.92037 0.87670 0.89601 0.90607 0.92956 0.89220 0.91000 0.85674 0.91394 0.90126 0.89744 0.89127 0.77353 0.91926 0.92742 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.04 10.52 113.37 1.19 2.24 16 2 O -0.40 -11.17 8.22 -124.80 -1.03 -12.20 16 3 C 0.07 1.66 4.51 71.98 0.32 1.98 16 4 C 0.14 3.06 3.17 44.97 0.14 3.20 16 5 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.12 -1.82 5.37 30.67 0.16 -1.66 16 7 C -0.11 -1.59 5.88 30.62 0.18 -1.41 16 8 C -0.13 -2.52 6.10 30.82 0.19 -2.34 16 9 C 0.05 1.38 6.15 86.51 0.53 1.91 16 10 N -0.58 -16.41 2.97 -795.77 -2.36 -18.77 16 11 C 0.51 17.90 7.39 87.27 0.64 18.55 16 12 O -0.49 -17.21 7.63 20.93 0.16 -17.05 16 13 C 0.50 20.80 7.85 87.27 0.68 21.48 16 14 O -0.55 -24.39 13.28 -3.23 -0.04 -24.43 16 15 N -0.58 -25.17 3.33 -813.39 -2.71 -27.88 16 16 C 0.13 4.82 5.49 86.73 0.48 5.30 16 17 C -0.12 -4.65 6.13 31.78 0.19 -4.46 16 18 C 0.23 11.47 0.89 -10.15 -0.01 11.46 16 19 O -0.59 -30.76 13.19 -148.98 -1.96 -32.72 16 20 C -0.56 -28.78 8.26 25.60 0.21 -28.57 16 21 H 0.07 3.53 7.78 -2.91 -0.02 3.50 16 22 C 0.03 1.46 5.27 84.65 0.45 1.90 16 23 N -0.92 -49.02 10.68 21.45 0.23 -48.79 16 24 Si 0.97 41.26 29.54 68.60 2.03 43.28 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 C 0.11 5.25 5.51 86.85 0.48 5.73 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 0.82 7.83 -2.39 -0.02 0.80 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.46 6.39 -2.39 -0.02 1.45 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.13 4.24 3.99 -72.77 -0.29 3.95 16 42 H 0.07 2.63 7.51 -2.39 -0.02 2.61 16 43 H 0.08 2.83 7.76 -2.38 -0.02 2.82 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.09 3.38 8.03 -2.39 -0.02 3.36 16 46 H 0.38 20.44 7.18 -74.06 -0.53 19.91 16 47 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 48 H 0.05 2.74 8.03 -2.39 -0.02 2.72 16 49 H 0.06 3.06 7.48 -2.38 -0.02 3.04 16 Total: -1.00 -62.07 376.61 0.31 -61.76 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: 0.15 Total: 41.48 kcal Atomic # 6 Polarization: 29.47 SS G_CDS: 5.85 Total: 35.32 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.84 Total: -95.44 kcal Atomic # 8 Polarization: -83.53 SS G_CDS: -2.87 Total: -86.40 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -62.07 0.31 -61.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118250964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.065 kcal (2) G-P(sol) polarization free energy of solvation -62.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds