Wall clock time and date at job start Wed Apr 1 2020 00:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 114.00011 * 2 1 4 4 C 1.53004 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.58588 * 308.21997 * 4 3 2 6 6 C 1.53201 * 109.58675 * 187.79769 * 4 3 2 7 7 C 1.53038 * 109.31092 * 185.57527 * 6 4 3 8 8 C 1.53038 * 109.53593 * 61.36566 * 7 6 4 9 9 C 1.53191 * 109.31607 * 298.63028 * 8 7 6 10 10 N 1.46924 * 108.77377 * 54.63698 * 9 8 7 11 11 C 1.34773 * 120.63042 * 126.41282 * 10 9 8 12 12 O 1.21357 * 120.00170 * 187.89130 * 11 10 9 13 13 C 1.49453 * 119.99980 * 7.89540 * 11 10 9 14 14 O 1.21347 * 119.99722 * 6.59925 * 13 11 10 15 15 N 1.34777 * 119.99712 * 186.60184 * 13 11 10 16 16 C 1.47023 * 125.65365 * 0.02562 * 15 13 11 17 17 C 1.54317 * 107.27254 * 181.01837 * 16 15 13 18 18 C 1.55157 * 102.94374 * 22.19364 * 17 16 15 19 19 O 1.42902 * 111.00418 * 82.60813 * 18 17 16 20 20 C 1.50699 * 111.00543 * 206.41840 * 18 17 16 21 21 H 1.07993 * 119.99832 * 0.02562 * 20 18 17 22 22 C 1.37876 * 120.00111 * 179.97438 * 20 18 17 23 23 N 1.31516 * 119.99842 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 120.00159 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46980 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47136 * 120.00072 * 24 22 20 27 27 H 1.48497 * 109.46845 * 239.99939 * 24 22 20 28 28 C 1.47429 * 125.64484 * 179.71479 * 15 13 11 29 29 H 1.08999 * 109.46836 * 60.00004 * 1 2 3 30 30 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46508 * 300.00238 * 1 2 3 32 32 H 1.09000 * 109.47400 * 60.00617 * 3 2 1 33 33 H 1.09001 * 109.47522 * 299.99789 * 3 2 1 34 34 H 1.09004 * 109.49344 * 305.52821 * 6 4 3 35 35 H 1.08998 * 109.49378 * 65.62421 * 6 4 3 36 36 H 1.08996 * 109.45961 * 301.34308 * 7 6 4 37 37 H 1.09002 * 109.44205 * 181.37613 * 7 6 4 38 38 H 1.09009 * 109.49400 * 178.67590 * 8 7 6 39 39 H 1.09003 * 109.52829 * 58.60385 * 8 7 6 40 40 H 1.09001 * 109.58526 * 294.84898 * 9 8 7 41 41 H 1.08997 * 109.70328 * 174.49477 * 9 8 7 42 42 H 1.08998 * 109.87778 * 300.44470 * 16 15 13 43 43 H 1.09006 * 109.88095 * 61.44791 * 16 15 13 44 44 H 1.08999 * 110.72008 * 140.55579 * 17 16 15 45 45 H 1.08998 * 110.72531 * 263.65338 * 17 16 15 46 46 H 0.96700 * 114.00538 * 180.02562 * 19 18 17 47 47 H 0.97002 * 120.00299 * 179.97438 * 23 22 20 48 48 H 1.09005 * 110.36544 * 274.74891 * 28 15 13 49 49 H 1.09002 * 110.36459 * 37.07010 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8499 0.5221 0.8060 6 6 4.1606 2.5694 0.1952 7 6 5.6808 2.4630 0.0548 8 6 6.0316 1.9691 -1.3505 9 6 5.4279 0.5774 -1.5639 10 7 3.9860 0.6403 -1.2889 11 6 3.0935 0.2066 -2.2009 12 8 1.9073 0.3935 -2.0257 13 6 3.5646 -0.5048 -3.4279 14 8 4.7361 -0.7981 -3.5471 15 7 2.6883 -0.8204 -4.4021 16 6 1.2480 -0.5256 -4.3877 17 6 0.6511 -1.0933 -5.6926 18 6 1.6853 -2.1731 -6.1069 19 8 1.4557 -3.3977 -5.4070 20 6 1.6671 -2.3948 -7.5974 21 1 0.9887 -1.8295 -8.2191 22 6 2.5172 -3.3185 -8.1675 23 7 3.3437 -4.0065 -7.4104 24 14 2.4952 -3.5927 -10.0151 25 1 1.4833 -2.7005 -10.6359 26 1 3.8353 -3.2869 -10.5770 27 1 2.1498 -5.0084 -10.3012 28 6 3.0165 -1.5128 -5.6616 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.7725 3.2537 -0.5594 35 1 3.9122 2.9435 1.1884 36 1 6.0653 1.7598 0.7935 37 1 6.1297 3.4428 0.2180 38 1 7.1152 1.9159 -1.4575 39 1 5.6265 2.6588 -2.0909 40 1 5.8988 -0.1332 -0.8846 41 1 5.5900 0.2605 -2.5941 42 1 0.7804 -1.0039 -3.5271 43 1 1.0907 0.5521 -4.3435 44 1 -0.3237 -1.5443 -5.5065 45 1 0.5758 -0.3157 -6.4526 46 1 2.0780 -4.1025 -5.6329 47 1 3.9416 -4.6567 -7.8114 48 1 3.3568 -0.7974 -6.4103 49 1 3.7778 -2.2736 -5.4890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118250965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:14 Heat of formation + Delta-G solvation = -126.409472 kcal Electronic energy + Delta-G solvation = -32340.585704 eV Core-core repulsion = 28076.308825 eV Total energy + Delta-G solvation = -4264.276879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88840 -39.07417 -37.52853 -37.23611 -36.84537 -34.34399 -32.75425 -32.17006 -32.13449 -30.22487 -27.96804 -27.59542 -26.27079 -25.46849 -24.35497 -23.63920 -22.53421 -21.40337 -20.42726 -19.63155 -18.69103 -17.27066 -16.77000 -16.51761 -16.30751 -16.00868 -15.61584 -15.38207 -15.06706 -14.93639 -14.69095 -14.40868 -14.13451 -14.02322 -13.67931 -13.30035 -13.05494 -12.97970 -12.84938 -12.69003 -12.42177 -12.18440 -11.99661 -11.61434 -11.52886 -11.45734 -11.18538 -11.09374 -11.06804 -11.00361 -10.80089 -10.74838 -10.54195 -10.47901 -10.21414 -9.96496 -9.40039 -9.38558 -8.74429 -8.54674 -8.51885 -8.31590 -7.86019 -6.31795 -4.41245 1.92011 2.64388 3.18193 3.27274 3.30689 3.63449 3.80435 3.91406 4.24232 4.50823 4.69331 4.75130 4.80531 4.96066 5.04783 5.10094 5.17188 5.27316 5.41131 5.50119 5.51814 5.55834 5.62720 5.66673 5.76417 5.80049 5.82036 5.83184 5.87319 5.91684 5.95151 6.06605 6.15432 6.21634 6.35185 6.51221 6.57188 6.73204 6.82602 6.90442 7.18554 7.30193 7.34769 7.41937 7.71878 7.90652 7.99328 8.17545 8.52844 8.63038 9.28886 9.45462 10.75510 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.003342 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.923681 B = 8375.066556 C = 9458.794767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.373 6.373 3 C 0.071 3.929 4 C 0.147 3.853 5 H 0.079 0.921 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.135 4.135 9 C 0.068 3.932 10 N -0.585 5.585 11 C 0.512 3.488 12 O -0.492 6.492 13 C 0.509 3.491 14 O -0.533 6.533 15 N -0.571 5.571 16 C 0.114 3.886 17 C -0.122 4.122 18 C 0.250 3.750 19 O -0.582 6.582 20 C -0.536 4.536 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.090 3.910 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.147 0.853 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.386 0.614 47 H 0.271 0.729 48 H 0.067 0.933 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 12.679 14.295 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.291 6.291 3 C -0.006 4.006 4 C 0.044 3.956 5 H 0.097 0.903 6 C -0.164 4.164 7 C -0.157 4.157 8 C -0.174 4.174 9 C -0.054 4.054 10 N -0.321 5.321 11 C 0.295 3.705 12 O -0.366 6.366 13 C 0.293 3.707 14 O -0.414 6.414 15 N -0.302 5.302 16 C -0.009 4.009 17 C -0.160 4.160 18 C 0.209 3.791 19 O -0.392 6.392 20 C -0.575 4.575 21 H 0.087 0.913 22 C -0.133 4.133 23 N -0.535 5.535 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.031 4.031 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.163 0.837 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.238 0.762 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.992 12.669 14.616 19.368 hybrid contribution 0.479 -0.278 -1.014 1.155 sum 1.471 12.390 13.603 18.459 Atomic orbital electron populations 1.22497 0.81432 1.02016 0.99022 1.87882 1.19425 1.26850 1.94965 1.22545 0.91293 0.86823 0.99921 1.21308 0.93679 0.94930 0.85730 0.90271 1.21876 0.96222 0.95903 1.02426 1.21523 0.95066 1.01453 0.97630 1.21960 1.01023 0.97479 0.96897 1.22905 0.78263 0.96252 1.07955 1.47782 1.07324 1.61358 1.15601 1.20135 0.86033 0.80026 0.84278 1.90689 1.16212 1.54130 1.75604 1.19785 0.85617 0.81607 0.83719 1.90401 1.16460 1.55411 1.79141 1.48634 1.09220 1.53883 1.18430 1.22121 0.79894 0.99310 0.99577 1.22711 0.99771 0.98422 0.95100 1.19625 0.87223 0.82015 0.90245 1.86092 1.60247 1.24010 1.68846 1.21549 1.21616 1.22802 0.91512 0.91314 1.25092 0.94098 0.94886 0.99181 1.69574 1.22906 1.25110 1.35876 0.86324 0.78034 0.78215 0.84194 1.19550 1.20750 1.20716 1.23541 1.02660 0.95765 0.81159 0.93742 0.90439 0.95553 0.94618 0.90737 0.91206 0.90637 0.91689 0.91643 0.90632 0.91707 0.91852 0.83655 0.90827 0.92205 0.90598 0.90561 0.76206 0.91884 0.91496 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.55 101.05 1.07 1.66 16 2 O -0.37 -5.72 8.30 -60.42 -0.50 -6.22 16 3 C 0.07 0.90 4.51 37.16 0.17 1.07 16 4 C 0.15 1.75 3.17 -67.59 -0.21 1.53 16 5 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 6 C -0.13 -1.12 5.37 -26.61 -0.14 -1.26 16 7 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 8 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 9 C 0.07 0.89 6.01 -3.71 -0.02 0.87 16 10 N -0.59 -8.50 2.97 -165.72 -0.49 -8.99 16 11 C 0.51 8.97 7.39 -11.59 -0.09 8.89 16 12 O -0.49 -8.67 7.71 -19.69 -0.15 -8.82 16 13 C 0.51 10.30 7.78 -11.58 -0.09 10.21 16 14 O -0.53 -11.38 13.41 5.50 0.07 -11.31 16 15 N -0.57 -12.06 3.33 -170.88 -0.57 -12.62 16 16 C 0.11 2.18 5.51 -3.07 -0.02 2.16 16 17 C -0.12 -2.48 6.12 -24.90 -0.15 -2.63 16 18 C 0.25 6.04 0.89 -89.51 -0.08 5.96 16 19 O -0.58 -15.07 13.19 -35.23 -0.46 -15.53 16 20 C -0.54 -13.76 8.25 -34.44 -0.28 -14.05 16 21 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 22 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 23 N -0.90 -23.50 10.72 55.43 0.59 -22.91 16 24 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C 0.09 2.11 5.64 -2.41 -0.01 2.10 16 29 H 0.04 0.58 7.83 -51.93 -0.41 0.18 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.04 0.37 8.13 -51.93 -0.42 -0.05 16 33 H 0.07 1.04 6.31 -51.93 -0.33 0.72 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.15 2.33 4.26 -55.09 -0.23 2.09 16 42 H 0.07 1.46 7.44 -51.93 -0.39 1.07 16 43 H 0.06 1.04 7.83 -51.93 -0.41 0.63 16 44 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16 46 H 0.39 10.29 6.93 45.56 0.32 10.60 16 47 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 48 H 0.07 1.58 8.04 -51.93 -0.42 1.16 16 49 H 0.09 2.26 7.64 -51.93 -0.40 1.86 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -28.55 377.00 -8.42 -36.98 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -7.29 Total: 13.19 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -0.28 Total: 15.54 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.47 Total: -44.52 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.04 Total: -41.88 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.55 -8.42 -36.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118250965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.431 kcal (2) G-P(sol) polarization free energy of solvation -28.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds