Wall clock time and date at job start Wed Apr 1 2020 00:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42895 * 114.00011 * 2 1 4 4 C 1.53004 * 109.46852 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.58588 * 308.21997 * 4 3 2 6 6 C 1.53201 * 109.58675 * 187.79769 * 4 3 2 7 7 C 1.53038 * 109.31092 * 185.57527 * 6 4 3 8 8 C 1.53038 * 109.53593 * 61.36566 * 7 6 4 9 9 C 1.53191 * 109.31607 * 298.63028 * 8 7 6 10 10 N 1.46924 * 108.77377 * 54.63698 * 9 8 7 11 11 C 1.34773 * 120.63042 * 126.41282 * 10 9 8 12 12 O 1.21357 * 120.00170 * 187.89130 * 11 10 9 13 13 C 1.49453 * 119.99980 * 7.89540 * 11 10 9 14 14 O 1.21347 * 119.99722 * 6.59925 * 13 11 10 15 15 N 1.34777 * 119.99712 * 186.60184 * 13 11 10 16 16 C 1.47023 * 125.65365 * 0.02562 * 15 13 11 17 17 C 1.54317 * 107.27254 * 181.01837 * 16 15 13 18 18 C 1.55157 * 102.94374 * 22.19364 * 17 16 15 19 19 O 1.42902 * 111.00418 * 82.60813 * 18 17 16 20 20 C 1.50699 * 111.00543 * 206.41840 * 18 17 16 21 21 H 1.07993 * 119.99832 * 0.02562 * 20 18 17 22 22 C 1.37876 * 120.00111 * 179.97438 * 20 18 17 23 23 N 1.31516 * 119.99842 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 120.00159 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46980 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47136 * 120.00072 * 24 22 20 27 27 H 1.48497 * 109.46845 * 239.99939 * 24 22 20 28 28 C 1.47429 * 125.64484 * 179.71479 * 15 13 11 29 29 H 1.08999 * 109.46836 * 60.00004 * 1 2 3 30 30 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46508 * 300.00238 * 1 2 3 32 32 H 1.09000 * 109.47400 * 60.00617 * 3 2 1 33 33 H 1.09001 * 109.47522 * 299.99789 * 3 2 1 34 34 H 1.09004 * 109.49344 * 305.52821 * 6 4 3 35 35 H 1.08998 * 109.49378 * 65.62421 * 6 4 3 36 36 H 1.08996 * 109.45961 * 301.34308 * 7 6 4 37 37 H 1.09002 * 109.44205 * 181.37613 * 7 6 4 38 38 H 1.09009 * 109.49400 * 178.67590 * 8 7 6 39 39 H 1.09003 * 109.52829 * 58.60385 * 8 7 6 40 40 H 1.09001 * 109.58526 * 294.84898 * 9 8 7 41 41 H 1.08997 * 109.70328 * 174.49477 * 9 8 7 42 42 H 1.08998 * 109.87778 * 300.44470 * 16 15 13 43 43 H 1.09006 * 109.88095 * 61.44791 * 16 15 13 44 44 H 1.08999 * 110.72008 * 140.55579 * 17 16 15 45 45 H 1.08998 * 110.72531 * 263.65338 * 17 16 15 46 46 H 0.96700 * 114.00538 * 180.02562 * 19 18 17 47 47 H 0.97002 * 120.00299 * 179.97438 * 23 22 20 48 48 H 1.09005 * 110.36544 * 274.74891 * 28 15 13 49 49 H 1.09002 * 110.36459 * 37.07010 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8499 0.5221 0.8060 6 6 4.1606 2.5694 0.1952 7 6 5.6808 2.4630 0.0548 8 6 6.0316 1.9691 -1.3505 9 6 5.4279 0.5774 -1.5639 10 7 3.9860 0.6403 -1.2889 11 6 3.0935 0.2066 -2.2009 12 8 1.9073 0.3935 -2.0257 13 6 3.5646 -0.5048 -3.4279 14 8 4.7361 -0.7981 -3.5471 15 7 2.6883 -0.8204 -4.4021 16 6 1.2480 -0.5256 -4.3877 17 6 0.6511 -1.0933 -5.6926 18 6 1.6853 -2.1731 -6.1069 19 8 1.4557 -3.3977 -5.4070 20 6 1.6671 -2.3948 -7.5974 21 1 0.9887 -1.8295 -8.2191 22 6 2.5172 -3.3185 -8.1675 23 7 3.3437 -4.0065 -7.4104 24 14 2.4952 -3.5927 -10.0151 25 1 1.4833 -2.7005 -10.6359 26 1 3.8353 -3.2869 -10.5770 27 1 2.1498 -5.0084 -10.3012 28 6 3.0165 -1.5128 -5.6616 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.6888 1.8463 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.7725 3.2537 -0.5594 35 1 3.9122 2.9435 1.1884 36 1 6.0653 1.7598 0.7935 37 1 6.1297 3.4428 0.2180 38 1 7.1152 1.9159 -1.4575 39 1 5.6265 2.6588 -2.0909 40 1 5.8988 -0.1332 -0.8846 41 1 5.5900 0.2605 -2.5941 42 1 0.7804 -1.0039 -3.5271 43 1 1.0907 0.5521 -4.3435 44 1 -0.3237 -1.5443 -5.5065 45 1 0.5758 -0.3157 -6.4526 46 1 2.0780 -4.1025 -5.6329 47 1 3.9416 -4.6567 -7.8114 48 1 3.3568 -0.7974 -6.4103 49 1 3.7778 -2.2736 -5.4890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118250965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:13 Heat of formation + Delta-G solvation = -145.633618 kcal Electronic energy + Delta-G solvation = -32341.419326 eV Core-core repulsion = 28076.308825 eV Total energy + Delta-G solvation = -4265.110501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.19684 -40.55733 -39.08963 -38.44168 -38.02852 -36.15041 -34.17173 -33.78137 -33.07798 -31.95707 -29.73797 -28.62941 -27.70792 -26.84899 -25.55673 -24.88092 -23.91016 -22.53494 -21.58490 -21.33740 -20.07432 -19.19867 -18.18449 -17.87604 -17.41541 -17.18820 -17.05654 -16.98592 -16.68578 -16.20617 -15.93671 -15.80326 -15.38954 -15.12317 -14.85846 -14.73712 -14.64254 -14.40021 -14.14284 -13.99407 -13.70000 -13.50981 -13.43898 -13.29623 -12.96493 -12.84626 -12.55044 -12.45869 -12.31267 -12.22110 -12.17478 -12.12472 -11.94621 -11.80883 -11.59088 -11.31803 -11.10582 -10.67673 -10.47889 -10.37548 -9.81338 -9.70172 -9.50893 -8.26901 -6.43901 0.44471 1.29026 1.42771 1.45891 1.56702 2.19179 2.35232 2.43857 2.94001 2.99074 3.22843 3.75209 3.77670 3.92846 4.02649 4.07737 4.15353 4.16617 4.24575 4.26765 4.31796 4.39395 4.50916 4.60893 4.66535 4.67518 4.71288 4.83005 4.87014 4.92724 4.94138 4.96235 4.98253 5.03697 5.05523 5.14422 5.16632 5.28283 5.33871 5.42093 5.43665 5.55906 5.74617 6.00914 6.09637 6.36197 6.43585 6.62739 6.73171 7.03223 7.28743 7.38095 8.79353 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.003342 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.923681 B = 8375.066556 C = 9458.794767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.403 6.403 3 C 0.070 3.930 4 C 0.141 3.859 5 H 0.084 0.916 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.064 3.936 10 N -0.578 5.578 11 C 0.511 3.489 12 O -0.495 6.495 13 C 0.499 3.501 14 O -0.552 6.552 15 N -0.581 5.581 16 C 0.124 3.876 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.591 6.591 20 C -0.555 4.555 21 H 0.072 0.928 22 C 0.027 3.973 23 N -0.918 5.918 24 Si 0.968 3.032 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.105 3.895 29 H 0.035 0.965 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.378 0.622 47 H 0.272 0.728 48 H 0.060 0.940 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 14.818 15.695 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.322 6.322 3 C -0.007 4.007 4 C 0.040 3.960 5 H 0.102 0.898 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.167 4.167 9 C -0.057 4.057 10 N -0.313 5.313 11 C 0.292 3.708 12 O -0.370 6.370 13 C 0.284 3.716 14 O -0.434 6.434 15 N -0.312 5.312 16 C 0.002 3.998 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.400 6.400 20 C -0.593 4.593 21 H 0.090 0.910 22 C -0.174 4.174 23 N -0.558 5.558 24 Si 0.793 3.207 25 H -0.188 1.188 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.017 4.017 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.133 0.867 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.229 0.771 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.841 14.842 16.054 21.880 hybrid contribution 0.580 -0.952 -1.379 1.773 sum 1.421 13.890 14.675 20.256 Atomic orbital electron populations 1.22550 0.80506 1.02152 0.99792 1.87840 1.20668 1.28540 1.95139 1.22638 0.91540 0.85907 1.00566 1.21646 0.93644 0.96809 0.83947 0.89787 1.21883 0.96289 0.93540 1.03952 1.21529 0.94733 1.02800 0.96164 1.21919 1.01608 0.94922 0.98268 1.22845 0.77898 0.98752 1.06176 1.47894 1.07391 1.60131 1.15899 1.19649 0.86448 0.80666 0.83995 1.90697 1.16177 1.54593 1.75576 1.20563 0.85302 0.81348 0.84420 1.90425 1.17268 1.55913 1.79760 1.48690 1.10177 1.54230 1.18091 1.22088 0.78596 1.00446 0.98625 1.22716 0.99030 0.97551 0.95995 1.19884 0.88784 0.82120 0.89921 1.86083 1.60087 1.24575 1.69268 1.21834 1.21850 1.23168 0.92419 0.91022 1.25837 0.93714 0.94670 1.03161 1.69681 1.23312 1.25421 1.37384 0.85355 0.78005 0.77994 0.79362 1.18776 1.20649 1.20646 1.23103 1.01482 0.94804 0.82351 0.94616 0.90734 0.93030 0.91615 0.92282 0.91584 0.87733 0.90873 0.89374 0.89115 0.92424 0.91298 0.86688 0.91463 0.89973 0.89906 0.88913 0.77126 0.91879 0.92223 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 10.55 113.37 1.20 2.32 16 2 O -0.40 -11.87 8.30 -124.90 -1.04 -12.91 16 3 C 0.07 1.62 4.51 71.98 0.32 1.95 16 4 C 0.14 3.05 3.17 44.98 0.14 3.19 16 5 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 6 C -0.12 -1.69 5.37 30.67 0.16 -1.52 16 7 C -0.11 -1.50 5.88 30.62 0.18 -1.32 16 8 C -0.13 -2.33 6.08 30.67 0.19 -2.15 16 9 C 0.06 1.67 6.01 86.36 0.52 2.19 16 10 N -0.58 -16.34 2.97 -796.56 -2.37 -18.71 16 11 C 0.51 17.92 7.39 87.27 0.64 18.57 16 12 O -0.50 -17.27 7.71 20.81 0.16 -17.11 16 13 C 0.50 20.78 7.78 87.27 0.68 21.46 16 14 O -0.55 -24.64 13.41 -3.24 -0.04 -24.69 16 15 N -0.58 -25.16 3.33 -812.91 -2.70 -27.86 16 16 C 0.12 4.76 5.51 86.73 0.48 5.24 16 17 C -0.12 -4.64 6.12 31.78 0.19 -4.45 16 18 C 0.23 11.51 0.89 -10.07 -0.01 11.51 16 19 O -0.59 -31.56 13.19 -148.98 -1.97 -33.52 16 20 C -0.55 -28.74 8.25 25.60 0.21 -28.53 16 21 H 0.07 3.58 7.76 -2.91 -0.02 3.56 16 22 C 0.03 1.38 5.29 84.65 0.45 1.83 16 23 N -0.92 -49.56 10.72 21.45 0.23 -49.33 16 24 Si 0.97 41.29 29.54 68.60 2.03 43.31 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 C 0.10 5.14 5.64 86.93 0.49 5.63 16 29 H 0.04 0.91 7.83 -2.39 -0.02 0.89 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.06 1.56 6.31 -2.39 -0.02 1.55 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.12 3.80 4.26 -52.34 -0.22 3.57 16 42 H 0.07 2.66 7.44 -2.39 -0.02 2.64 16 43 H 0.08 2.77 7.83 -2.38 -0.02 2.75 16 44 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.09 3.40 8.02 -2.39 -0.02 3.38 16 46 H 0.38 21.06 6.93 -74.06 -0.51 20.55 16 47 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 48 H 0.06 2.94 8.04 -2.38 -0.02 2.92 16 49 H 0.05 2.80 7.64 -2.39 -0.02 2.78 16 Total: -1.00 -63.40 377.00 0.38 -63.02 By element: Atomic # 1 Polarization: 41.65 SS G_CDS: 0.23 Total: 41.88 kcal Atomic # 6 Polarization: 30.07 SS G_CDS: 5.85 Total: 35.92 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -4.84 Total: -95.91 kcal Atomic # 8 Polarization: -85.34 SS G_CDS: -2.89 Total: -88.23 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -63.40 0.38 -63.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118250965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.616 kcal (2) G-P(sol) polarization free energy of solvation -63.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds