Wall clock time and date at job start Wed Apr 1 2020 00:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00035 * 2 1 4 4 C 1.52993 * 109.47219 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47294 * 64.99877 * 4 3 2 6 6 C 1.45289 * 114.66393 * 269.98127 * 5 4 3 7 7 C 1.51476 * 111.07520 * 218.38317 * 6 5 4 8 8 O 1.41743 * 112.43547 * 293.53296 * 7 6 5 9 9 C 1.39550 * 118.82587 * 86.75399 * 8 7 6 10 10 H 1.09002 * 106.96300 * 39.09254 * 9 8 7 11 11 C 1.52769 * 111.71094 * 155.73905 * 9 8 7 12 12 N 1.46944 * 109.08920 * 74.51417 * 11 9 8 13 13 C 1.34772 * 120.80889 * 233.01240 * 12 11 9 14 14 O 1.21291 * 119.99768 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00554 * 179.97438 * 13 12 11 16 16 C 1.50693 * 109.47465 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00230 * 359.97438 * 16 15 13 18 18 C 1.37881 * 120.00187 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99759 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00257 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46706 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47039 * 119.99897 * 20 18 16 23 23 H 1.48496 * 109.47324 * 240.00105 * 20 18 16 24 24 C 1.46982 * 118.38948 * 53.00684 * 12 11 9 25 25 C 1.53117 * 108.62273 * 305.29844 * 24 12 11 26 26 C 1.51689 * 113.05128 * 281.67001 * 9 8 7 27 27 H 1.08995 * 107.84232 * 175.78317 * 26 9 8 28 28 C 1.29546 * 114.66573 * 90.00306 * 5 4 3 29 29 O 1.21286 * 113.58446 * 5.37666 * 28 5 4 30 30 H 1.09001 * 109.47335 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46396 * 299.99658 * 1 2 3 32 32 H 1.08999 * 109.47662 * 59.99282 * 1 2 3 33 33 H 1.09000 * 109.47235 * 60.00508 * 3 2 1 34 34 H 1.09006 * 109.47098 * 300.00663 * 3 2 1 35 35 H 1.09003 * 109.47310 * 304.99962 * 4 3 2 36 36 H 1.09004 * 109.47609 * 185.00021 * 4 3 2 37 37 H 1.09003 * 109.15896 * 338.79359 * 6 5 4 38 38 H 1.09001 * 109.15914 * 97.97259 * 6 5 4 39 39 H 1.08999 * 108.86524 * 54.61473 * 7 6 5 40 40 H 1.09000 * 108.86595 * 173.03940 * 7 6 5 41 41 H 1.08997 * 109.53599 * 194.39617 * 11 9 8 42 42 H 1.09003 * 109.54080 * 314.63215 * 11 9 8 43 43 H 1.09001 * 109.46932 * 299.99920 * 15 13 12 44 44 H 1.09001 * 109.46980 * 59.99442 * 15 13 12 45 45 H 0.96991 * 119.99866 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.61676 * 185.56115 * 24 12 11 47 47 H 1.09000 * 109.60971 * 65.03738 * 24 12 11 48 48 H 1.08995 * 109.46559 * 295.21325 * 25 24 12 49 49 H 1.09002 * 109.46262 * 175.23768 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0640 -0.8853 -1.2129 7 6 5.2673 -1.3791 -1.9892 8 8 5.1533 -1.1300 -3.3799 9 6 5.5788 0.1013 -3.8800 10 1 6.4883 0.3665 -3.3408 11 6 5.9496 0.0129 -5.3594 12 7 4.7197 -0.0756 -6.1586 13 6 4.5488 -1.0675 -7.0549 14 8 5.4164 -1.9009 -7.2099 15 6 3.2799 -1.1412 -7.8645 16 6 3.3400 -2.3328 -8.7852 17 1 4.2101 -2.9725 -8.7844 18 6 2.2844 -2.6057 -9.6292 19 7 1.2254 -1.8258 -9.6312 20 14 2.3591 -4.0823 -10.7709 21 1 3.6487 -4.7929 -10.5774 22 1 1.2358 -5.0034 -10.4629 23 1 2.2520 -3.6247 -12.1796 24 6 3.6803 0.9438 -5.9568 25 6 3.3151 0.9821 -4.4703 26 6 4.5807 1.2176 -3.6380 27 1 5.0271 2.1471 -3.9912 28 6 4.2222 1.3992 -2.2122 29 8 4.1444 2.5619 -1.8757 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8515 0.5682 0.8409 36 1 3.9786 2.1765 0.0889 37 1 4.1494 -1.2101 -0.1759 38 1 3.1592 -1.3109 -1.6468 39 1 6.1601 -0.8827 -1.6089 40 1 5.3703 -2.4531 -1.8341 41 1 6.5091 0.9025 -5.6487 42 1 6.5597 -0.8742 -5.5299 43 1 2.4265 -1.2423 -7.1941 44 1 3.1723 -0.2313 -8.4550 45 1 0.4827 -2.0180 -10.2247 46 1 2.7981 0.6881 -6.5437 47 1 4.0586 1.9182 -6.2658 48 1 2.8627 0.0331 -4.1829 49 1 2.6068 1.7911 -4.2911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143196701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:30 Heat of formation + Delta-G solvation = -131.606113 kcal Electronic energy + Delta-G solvation = -31845.377973 eV Core-core repulsion = 27580.875750 eV Total energy + Delta-G solvation = -4264.502222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.60342 -39.52418 -38.22875 -38.02166 -36.56786 -35.21042 -32.94833 -32.43999 -31.61954 -30.53223 -29.14795 -28.42843 -26.70983 -26.02093 -24.29381 -23.39618 -23.08186 -22.80321 -20.86213 -19.28328 -18.72419 -17.62470 -17.27942 -16.69592 -16.54712 -16.33739 -16.01764 -15.82896 -15.51763 -15.25420 -15.03258 -14.78893 -14.59340 -14.29953 -14.13934 -13.74827 -13.41441 -13.05840 -12.85781 -12.69338 -12.56662 -12.47622 -12.36996 -12.06493 -12.02812 -11.88914 -11.53598 -11.46902 -11.20374 -11.11282 -11.02686 -10.69079 -10.60539 -10.54250 -10.02612 -9.91458 -9.83272 -9.63557 -9.15557 -8.97061 -8.57033 -8.40896 -8.08471 -6.02728 -4.01511 2.47628 2.74782 3.34707 3.35749 3.42648 3.50435 3.50508 3.62214 3.74183 4.31222 4.51278 4.51812 4.68976 4.69412 4.73914 4.79401 4.86549 4.96057 4.98916 5.11525 5.12265 5.12435 5.17509 5.29791 5.35745 5.39242 5.43743 5.44186 5.52113 5.57351 5.61496 5.70758 5.73287 5.78733 5.87377 6.02859 6.07738 6.25234 6.34376 6.81978 7.00851 7.22359 7.36057 7.36087 7.43973 7.98154 7.99550 8.01733 8.41307 9.09518 9.25681 9.63392 11.09775 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.003109 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.880680 B = 9003.096838 C = 9797.620418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.048 3.952 4 C 0.096 3.904 5 N -0.575 5.575 6 C 0.085 3.915 7 C 0.053 3.947 8 O -0.361 6.361 9 C 0.098 3.902 10 H 0.048 0.952 11 C 0.121 3.879 12 N -0.625 5.625 13 C 0.523 3.477 14 O -0.542 6.542 15 C 0.008 3.992 16 C -0.505 4.505 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.114 3.886 25 C -0.117 4.117 26 C -0.119 4.119 27 H 0.112 0.888 28 C 0.522 3.478 29 O -0.579 6.579 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.260 0.740 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 7.841 22.569 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.029 4.029 4 C -0.027 4.027 5 N -0.304 5.304 6 C -0.038 4.038 7 C -0.025 4.025 8 O -0.279 6.279 9 C 0.038 3.962 10 H 0.066 0.934 11 C -0.003 4.003 12 N -0.361 5.361 13 C 0.315 3.685 14 O -0.418 6.418 15 C -0.032 4.032 16 C -0.544 4.544 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.009 4.009 25 C -0.156 4.156 26 C -0.140 4.140 27 H 0.130 0.870 28 C 0.311 3.689 29 O -0.461 6.461 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.131 0.869 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.438 7.637 22.360 23.877 hybrid contribution -0.427 -0.206 -0.202 0.515 sum 3.011 7.431 22.158 23.564 Atomic orbital electron populations 1.22732 0.80881 1.02859 0.99923 1.87867 1.19852 1.27712 1.95441 1.22896 0.93999 0.85099 1.00922 1.21819 0.92715 1.02014 0.86175 1.46251 1.64439 1.07402 1.12260 1.21867 1.00675 0.79130 1.02129 1.22536 0.96254 1.02118 0.81557 1.86723 1.85358 1.33971 1.21862 1.21462 0.94530 0.83490 0.96737 0.93408 1.21419 0.88802 1.03770 0.86317 1.48332 1.17685 1.29246 1.40883 1.21990 0.90440 0.78124 0.77983 1.90525 1.45208 1.39288 1.66752 1.19244 0.89286 0.99774 0.94849 1.21232 1.03438 1.10246 1.19464 0.90663 1.24997 0.95265 0.96989 0.97348 1.69965 1.06767 1.38296 1.39110 0.86398 0.78150 0.82503 0.80220 1.19472 1.21055 1.21060 1.21637 0.92843 0.91614 0.94843 1.21819 0.95288 1.03249 0.95247 1.21331 0.99828 1.01996 0.90866 0.86988 1.18640 0.77214 0.85717 0.87361 1.90702 1.54360 1.20668 1.80364 0.89520 0.94259 0.93986 0.92401 0.92729 0.89857 0.86910 0.88533 0.89977 0.93075 0.87431 0.90454 0.87929 0.93461 0.93540 0.93027 0.87890 0.91727 0.90469 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -3.89 9.97 -35.23 -0.35 -4.24 16 3 C 0.05 0.45 6.23 37.15 0.23 0.68 16 4 C 0.10 0.88 5.34 -4.04 -0.02 0.85 16 5 N -0.57 -6.22 2.64 -178.11 -0.47 -6.69 16 6 C 0.08 0.79 5.75 -5.46 -0.03 0.76 16 7 C 0.05 0.52 6.42 36.39 0.23 0.75 16 8 O -0.36 -5.03 9.71 -31.65 -0.31 -5.34 16 9 C 0.10 1.26 2.31 -27.51 -0.06 1.19 16 10 H 0.05 0.53 7.64 -51.93 -0.40 0.14 16 11 C 0.12 1.79 6.18 -3.92 -0.02 1.76 16 12 N -0.63 -11.11 2.97 -173.01 -0.51 -11.63 16 13 C 0.52 12.10 7.70 -10.99 -0.08 12.01 16 14 O -0.54 -14.27 14.89 5.55 0.08 -14.19 16 15 C 0.01 0.19 3.81 -29.04 -0.11 0.08 16 16 C -0.51 -14.75 8.92 -34.44 -0.31 -15.06 16 17 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.11 1.69 6.34 -3.72 -0.02 1.67 16 25 C -0.12 -1.57 5.31 -26.52 -0.14 -1.72 16 26 C -0.12 -1.50 1.97 -93.49 -0.18 -1.69 16 27 H 0.11 1.36 7.93 -51.93 -0.41 0.95 16 28 C 0.52 6.74 6.41 -14.45 -0.09 6.65 16 29 O -0.58 -8.75 14.86 5.55 0.08 -8.66 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.58 7.46 -51.93 -0.39 0.20 16 36 H 0.11 1.13 6.56 -51.93 -0.34 0.79 16 37 H 0.10 0.66 7.37 -51.93 -0.38 0.28 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.44 7.68 -51.93 -0.40 0.05 16 40 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.72 7.02 -51.93 -0.36 1.36 16 43 H 0.05 1.23 7.72 -51.93 -0.40 0.83 16 44 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.10 1.67 5.95 -51.93 -0.31 1.36 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 386.17 15.07 5.82 5.82 Total: -1.00 -35.60 386.17 -7.49 -43.09 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.94 Total: -0.50 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 0.40 Total: 10.78 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.25 Total: -43.96 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.49 Total: -32.43 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.60 -7.49 -43.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143196701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.518 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds