Wall clock time and date at job start Tue Mar 31 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47079 * 2 1 4 4 C 1.36006 * 116.99732 * 179.97438 * 3 2 1 5 5 C 1.38635 * 120.03921 * 359.97438 * 4 3 2 6 6 C 1.38183 * 119.99245 * 179.97438 * 5 4 3 7 7 C 1.38458 * 120.07359 * 0.02562 * 6 5 4 8 8 F 1.35096 * 119.96365 * 179.97438 * 7 6 5 9 9 C 1.38447 * 120.07220 * 359.97284 * 7 6 5 10 10 C 1.50700 * 119.99765 * 180.02562 * 9 7 6 11 11 N 1.46901 * 109.47158 * 89.99769 * 10 9 7 12 12 C 1.46957 * 111.00090 * 293.80048 * 11 10 9 13 13 C 1.53047 * 109.36659 * 176.81039 * 12 11 10 14 14 N 1.46954 * 109.36426 * 58.40160 * 13 12 11 15 15 C 1.46896 * 111.00459 * 176.81330 * 14 13 12 16 16 C 1.50703 * 109.47047 * 58.97570 * 15 14 13 17 17 H 1.07999 * 120.00312 * 5.01658 * 16 15 14 18 18 C 1.37876 * 119.99909 * 185.01192 * 16 15 14 19 19 N 1.31512 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47050 * 60.00187 * 20 18 16 22 22 H 1.48497 * 109.46949 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47215 * 300.00099 * 20 18 16 24 24 C 1.46957 * 110.87913 * 300.68110 * 14 13 12 25 25 C 1.46954 * 111.00139 * 170.00094 * 11 10 9 26 26 C 1.38337 * 120.00369 * 0.27819 * 9 7 6 27 27 F 1.35102 * 120.03149 * 179.72769 * 26 9 7 28 28 H 1.09002 * 109.46935 * 59.99952 * 1 2 3 29 29 H 1.08997 * 109.47108 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46856 * 300.00417 * 1 2 3 31 31 H 1.08991 * 109.47417 * 239.99512 * 2 1 3 32 32 H 1.09004 * 109.46791 * 119.99522 * 2 1 3 33 33 H 1.07997 * 120.00147 * 359.97274 * 5 4 3 34 34 H 1.07996 * 119.96646 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46827 * 330.00332 * 10 9 7 36 36 H 1.09000 * 109.47185 * 209.99816 * 10 9 7 37 37 H 1.09002 * 109.49002 * 296.78037 * 12 11 10 38 38 H 1.09002 * 109.48813 * 56.84323 * 12 11 10 39 39 H 1.09004 * 109.49321 * 298.43510 * 13 12 11 40 40 H 1.09000 * 109.51083 * 178.37772 * 13 12 11 41 41 H 1.09000 * 109.47629 * 178.97741 * 15 14 13 42 42 H 1.09003 * 109.47162 * 298.97997 * 15 14 13 43 43 H 0.97004 * 119.99880 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.49002 * 299.35030 * 24 14 13 45 45 H 1.09002 * 109.48813 * 179.28744 * 24 14 13 46 46 H 1.08997 * 109.48815 * 303.15696 * 25 11 10 47 47 H 1.09004 * 109.48633 * 63.21724 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.1999 0.4265 0.0016 6 6 5.5697 0.6087 0.0016 7 6 6.0995 1.8878 0.0011 8 9 7.4390 2.0633 0.0016 9 6 5.2581 2.9873 0.0000 10 6 5.8366 4.3788 -0.0011 11 7 6.0249 4.8297 -1.3865 12 6 7.0511 4.0273 -2.0667 13 6 7.1604 4.4748 -3.5262 14 7 7.4969 5.9046 -3.5735 15 6 7.6851 6.3556 -4.9588 16 6 6.4221 6.1091 -5.7433 17 1 5.5397 5.7379 -5.2435 18 6 6.3933 6.3577 -7.0992 19 7 7.4679 6.8093 -7.7080 20 14 4.8275 6.0529 -8.0715 21 1 3.7349 6.8992 -7.5283 22 1 5.0561 6.3961 -9.4981 23 1 4.4468 4.6218 -7.9609 24 6 6.4706 6.7069 -2.8933 25 6 6.3613 6.2594 -1.4339 26 6 3.8864 2.8085 0.0053 27 9 3.0648 3.8810 0.0098 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 3.7878 -0.5717 0.0024 34 1 6.2277 -0.2477 0.0029 35 1 6.7978 4.3730 0.5128 36 1 5.1542 5.0564 0.5120 37 1 8.0112 4.1683 -1.5702 38 1 6.7732 2.9740 -2.0291 39 1 6.2082 4.3085 -4.0299 40 1 7.9410 3.9009 -4.0254 41 1 7.9152 7.4210 -4.9661 42 1 8.5080 5.8030 -5.4122 43 1 7.4475 6.9846 -8.6618 44 1 5.5105 6.5660 -3.3898 45 1 6.7486 7.7603 -2.9309 46 1 5.5806 6.8335 -0.9350 47 1 7.3136 6.4258 -0.9301 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143937426.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:20 Heat of formation + Delta-G solvation = -87.533613 kcal Electronic energy + Delta-G solvation = -30454.763389 eV Core-core repulsion = 26081.084778 eV Total energy + Delta-G solvation = -4373.678611 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.08643 -48.90906 -40.31877 -38.86682 -37.62762 -35.22464 -32.61628 -32.24208 -31.50559 -30.27732 -29.35918 -28.12916 -26.01496 -24.52995 -23.45716 -23.21665 -22.68025 -21.64998 -21.04277 -19.05957 -18.49006 -17.96443 -17.68934 -16.81825 -16.37558 -16.14693 -15.87323 -15.36249 -15.20365 -15.14227 -14.72818 -14.55909 -14.48455 -14.31695 -14.11308 -13.62463 -13.41271 -13.25567 -13.09930 -12.97240 -12.89711 -12.45066 -11.97672 -11.95869 -11.83511 -11.80135 -11.69238 -11.35754 -11.01682 -10.99599 -10.82635 -10.61412 -10.44973 -10.31374 -10.00891 -9.81163 -9.50761 -9.14833 -8.38589 -8.35972 -8.06733 -7.12025 -5.98066 -4.06792 0.67866 0.80444 2.67542 3.05905 3.32947 3.37002 3.40816 3.75580 4.11592 4.15944 4.27338 4.45226 4.47287 4.50866 4.60032 4.72487 4.81253 4.83069 5.10654 5.17730 5.30820 5.32355 5.39163 5.46861 5.47932 5.59160 5.64956 5.67916 5.71688 5.72752 5.77261 5.91740 5.97585 6.03871 6.18697 6.31872 6.35534 6.65788 6.82880 6.91640 6.94908 7.24088 7.26707 7.41620 7.57054 7.94831 8.10616 8.33437 8.35012 9.03861 9.59898 11.06945 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.003246 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.889161 B = 8625.002443 C = 9930.189067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.305 6.305 4 C 0.088 3.912 5 C -0.158 4.158 6 C -0.123 4.123 7 C 0.097 3.903 8 F -0.128 7.128 9 C -0.105 4.105 10 C 0.094 3.906 11 N -0.530 5.530 12 C 0.058 3.942 13 C 0.067 3.933 14 N -0.544 5.544 15 C 0.188 3.812 16 C -0.548 4.548 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.064 3.936 25 C 0.061 3.939 26 C 0.120 3.880 27 F -0.117 7.117 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.027 0.973 42 H 0.034 0.966 43 H 0.262 0.738 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.359 -15.052 20.245 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.219 6.219 4 C 0.041 3.959 5 C -0.177 4.177 6 C -0.142 4.142 7 C 0.077 3.923 8 F -0.106 7.106 9 C -0.107 4.107 10 C -0.034 4.034 11 N -0.255 5.255 12 C -0.070 4.070 13 C -0.062 4.062 14 N -0.268 5.268 15 C 0.062 3.938 16 C -0.587 4.587 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.065 4.065 25 C -0.067 4.067 26 C 0.099 3.901 27 F -0.095 7.095 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.411 -14.774 20.055 26.291 hybrid contribution -0.718 -0.255 -0.782 1.092 sum -9.129 -15.029 19.272 26.089 Atomic orbital electron populations 1.21780 0.92404 1.02955 1.03860 1.22877 0.96265 0.81534 1.01569 1.86174 1.17433 1.29705 1.88611 1.18903 0.83819 0.92585 1.00584 1.20905 0.92865 0.98132 1.05821 1.20930 0.95399 0.95976 1.01941 1.17059 0.77547 0.92885 1.04813 1.91532 1.29114 1.96128 1.93864 1.19656 0.91097 0.96705 1.03282 1.20854 0.99990 0.90792 0.91768 1.62192 1.46573 1.04166 1.12534 1.22324 0.92271 0.96462 0.95917 1.21898 1.00657 0.90685 0.92981 1.62691 1.42443 1.01997 1.19677 1.19724 0.96302 0.96109 0.81663 1.21748 0.98652 1.44612 0.93685 0.92355 1.24955 0.96073 0.94946 0.97781 1.69938 1.27968 1.45000 1.10244 0.86710 0.83919 0.78764 0.78965 1.20232 1.21250 1.20281 1.21929 0.95832 0.97233 0.91515 1.22238 0.98834 0.87046 0.98560 1.16315 0.86598 0.81221 1.05925 1.91537 1.71102 1.53207 1.93650 0.91233 0.90199 0.91413 0.91635 0.91801 0.83671 0.83731 0.92909 0.89152 0.94383 0.91679 0.93308 0.91362 0.95482 0.94797 0.92819 0.93392 0.91246 0.91081 0.94514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.05 0.36 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.42 10.00 -19.76 -0.20 -3.62 16 4 C 0.09 1.01 6.69 -39.19 -0.26 0.75 16 5 C -0.16 -1.42 9.04 -39.46 -0.36 -1.77 16 6 C -0.12 -1.17 10.02 -39.52 -0.40 -1.56 16 7 C 0.10 1.16 5.91 -39.42 -0.23 0.93 16 8 F -0.13 -1.64 15.06 2.25 0.03 -1.61 16 9 C -0.10 -1.39 4.90 -104.51 -0.51 -1.90 16 10 C 0.09 1.29 4.79 -4.98 -0.02 1.26 16 11 N -0.53 -8.81 4.70 -235.91 -1.11 -9.92 16 12 C 0.06 1.01 4.57 -3.77 -0.02 0.99 16 13 C 0.07 1.39 5.24 -3.77 -0.02 1.37 16 14 N -0.54 -12.16 4.92 -235.91 -1.16 -13.32 16 15 C 0.19 4.96 5.14 -4.98 -0.03 4.93 16 16 C -0.55 -15.43 7.66 -34.44 -0.26 -15.69 16 17 H 0.06 1.66 5.82 -52.49 -0.31 1.35 16 18 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 19 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.06 1.29 5.32 -3.77 -0.02 1.27 16 25 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 26 C 0.12 1.62 7.25 -39.30 -0.28 1.34 16 27 F -0.12 -1.76 16.31 2.25 0.04 -1.72 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 33 H 0.15 0.85 6.30 -52.49 -0.33 0.52 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.05 0.69 7.61 -51.93 -0.40 0.30 16 36 H 0.09 1.15 7.51 -51.93 -0.39 0.76 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.08 5.63 -51.93 -0.29 0.78 16 39 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 40 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.03 0.76 8.12 -51.93 -0.42 0.33 16 42 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.05 1.08 6.78 -51.93 -0.35 0.73 16 45 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 46 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -31.65 377.73 -9.92 -41.57 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.98 Total: -2.83 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.95 Total: -5.25 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -1.53 Total: -49.18 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.20 Total: -3.62 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.65 -9.92 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143937426.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.965 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds