Wall clock time and date at job start Tue Mar 31 2020 22:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47089 * 2 1 4 4 C 1.36018 * 116.99574 * 180.02562 * 3 2 1 5 5 C 1.38833 * 120.06620 * 90.00132 * 4 3 2 6 6 F 1.35103 * 120.03923 * 359.97438 * 5 4 3 7 7 C 1.38379 * 119.92575 * 179.97438 * 5 4 3 8 8 C 1.38250 * 120.06995 * 359.97438 * 7 5 4 9 9 C 1.50694 * 119.92910 * 180.02562 * 8 7 5 10 10 N 1.46906 * 109.47347 * 89.99993 * 9 8 7 11 11 C 1.46955 * 110.99868 * 293.79749 * 10 9 8 12 12 C 1.53053 * 109.36435 * 176.80906 * 11 10 9 13 13 N 1.46954 * 109.36389 * 58.40358 * 12 11 10 14 14 C 1.46896 * 111.00213 * 176.81137 * 13 12 11 15 15 C 1.50703 * 109.47022 * 58.99033 * 14 13 12 16 16 H 1.07997 * 119.99883 * 4.99350 * 15 14 13 17 17 C 1.37882 * 119.99730 * 184.98618 * 15 14 13 18 18 N 1.31515 * 119.99736 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00118 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47223 * 89.99677 * 19 17 15 21 21 H 1.48500 * 109.46857 * 209.99529 * 19 17 15 22 22 H 1.48501 * 109.47082 * 329.99167 * 19 17 15 23 23 C 1.46958 * 110.88210 * 300.67956 * 13 12 11 24 24 C 1.46954 * 111.00218 * 169.99933 * 10 9 8 25 25 C 1.38251 * 120.13781 * 0.27209 * 8 7 5 26 26 C 1.38368 * 120.07022 * 359.45710 * 25 8 7 27 27 F 1.35099 * 120.03524 * 180.27373 * 26 25 8 28 28 H 1.09000 * 109.47604 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47192 * 300.00554 * 1 2 3 30 30 H 1.09003 * 109.46947 * 59.99765 * 1 2 3 31 31 H 1.08997 * 109.46920 * 240.00026 * 2 1 3 32 32 H 1.09003 * 109.46947 * 120.00234 * 2 1 3 33 33 H 1.08002 * 119.96348 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47235 * 330.00064 * 9 8 7 35 35 H 1.09001 * 109.47512 * 209.99974 * 9 8 7 36 36 H 1.08994 * 109.49151 * 296.77829 * 11 10 9 37 37 H 1.09002 * 109.49075 * 56.84446 * 11 10 9 38 38 H 1.09000 * 109.48893 * 298.43579 * 12 11 10 39 39 H 1.08999 * 109.48926 * 178.36766 * 12 11 10 40 40 H 1.09000 * 109.47165 * 178.99411 * 14 13 12 41 41 H 1.09003 * 109.47339 * 298.98860 * 14 13 12 42 42 H 0.96996 * 120.00094 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.48533 * 299.35624 * 23 13 12 44 44 H 1.09002 * 109.49402 * 179.28691 * 23 13 12 45 45 H 1.09003 * 109.49094 * 303.15664 * 24 10 9 46 46 H 1.09000 * 109.48971 * 63.22134 * 24 10 9 47 47 H 1.08005 * 119.96284 * 179.72897 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3548 1.5254 -0.0005 5 6 4.0439 1.6166 -1.2023 6 9 3.3759 1.5282 -2.3733 7 6 5.4157 1.7984 -1.1995 8 6 6.0999 1.8896 -0.0017 9 6 7.5937 2.0881 -0.0023 10 7 7.8967 3.5255 -0.0028 11 6 7.4632 4.1547 -1.2581 12 6 7.7233 5.6613 -1.1870 13 7 9.1541 5.8980 -0.9493 14 6 9.4571 7.3353 -0.9498 15 6 8.6488 8.0195 0.1225 16 1 8.0388 7.4345 0.7948 17 6 8.6882 9.3923 0.2452 18 7 7.9825 9.9893 1.1806 19 14 9.7430 10.4041 -0.9181 20 1 8.9423 10.7822 -2.1101 21 1 10.2072 11.6320 -0.2238 22 1 10.9179 9.6025 -1.3448 23 6 9.5877 5.2688 0.3060 24 6 9.3274 3.7623 0.2349 25 6 5.4171 1.7939 1.1967 26 6 4.0447 1.6178 1.2006 27 9 3.3776 1.5300 2.3721 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.9522 1.8699 -2.1341 34 1 8.0212 1.6264 -0.8923 35 1 8.0219 1.6268 0.8877 36 1 8.0223 3.7280 -2.0907 37 1 6.3980 3.9762 -1.4055 38 1 7.1430 6.0924 -0.3712 39 1 7.4293 6.1259 -2.1281 40 1 10.5191 7.4828 -0.7541 41 1 9.2045 7.7596 -1.9216 42 1 8.0099 10.9551 1.2668 43 1 9.0285 5.6955 1.1387 44 1 10.6528 5.4473 0.4534 45 1 9.6216 3.2976 1.1760 46 1 9.9078 3.3311 -0.5809 47 1 5.9551 1.8612 2.1309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144025480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:24 Heat of formation + Delta-G solvation = -86.049757 kcal Electronic energy + Delta-G solvation = -29893.675390 eV Core-core repulsion = 25520.061124 eV Total energy + Delta-G solvation = -4373.614266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.20219 -49.15811 -40.07817 -39.00071 -37.83115 -35.24070 -32.61489 -32.12406 -30.79508 -30.65579 -30.23969 -28.29915 -26.10487 -24.09834 -23.52326 -23.28052 -22.89023 -21.74094 -21.15371 -19.12434 -18.57026 -17.90725 -17.66571 -16.80659 -16.52379 -16.05076 -15.84355 -15.54424 -15.38529 -15.36910 -14.89464 -14.76187 -14.55292 -14.34000 -14.29451 -13.95361 -13.54230 -13.27270 -12.94925 -12.88283 -12.68838 -12.41478 -12.17376 -12.09856 -11.92216 -11.87987 -11.80384 -11.60595 -11.19751 -10.91329 -10.73889 -10.52385 -10.30070 -10.25412 -10.14180 -9.91522 -9.48672 -9.02067 -8.95355 -8.58917 -8.19768 -7.22543 -6.09478 -4.09494 0.51789 0.68735 2.78943 3.18049 3.27554 3.35422 3.38669 3.58261 4.05113 4.11909 4.34345 4.39769 4.46127 4.68492 4.76103 4.83030 4.91778 4.94661 5.01908 5.06808 5.23479 5.25002 5.36902 5.43459 5.45976 5.50505 5.53370 5.54100 5.71465 5.74029 5.76446 5.82772 5.88469 6.04522 6.07738 6.22671 6.26631 6.51121 6.74566 6.83158 6.90626 7.04565 7.04880 7.15871 7.23818 7.55542 8.02901 8.06845 8.45318 8.94354 9.53042 11.03409 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.002525 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.901188 B =11085.572167 C =11518.530675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.318 6.318 4 C 0.024 3.976 5 C 0.112 3.888 6 F -0.125 7.125 7 C -0.146 4.146 8 C -0.017 4.017 9 C 0.091 3.909 10 N -0.531 5.531 11 C 0.055 3.945 12 C 0.063 3.937 13 N -0.537 5.537 14 C 0.155 3.845 15 C -0.551 4.551 16 H 0.077 0.923 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C 0.061 3.939 24 C 0.062 3.938 25 C -0.129 4.129 26 C 0.113 3.887 27 F -0.124 7.124 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.146 0.854 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 -23.885 -3.013 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.235 6.235 4 C -0.022 4.022 5 C 0.092 3.908 6 F -0.103 7.103 7 C -0.166 4.166 8 C -0.018 4.018 9 C -0.036 4.036 10 N -0.256 5.256 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.261 5.261 14 C 0.028 3.972 15 C -0.589 4.589 16 H 0.095 0.905 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.706 3.294 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.068 4.068 24 C -0.066 4.066 25 C -0.149 4.149 26 C 0.093 3.907 27 F -0.102 7.102 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.357 -23.576 -2.944 24.872 hybrid contribution 0.237 0.655 -0.501 0.859 sum -7.119 -22.921 -3.445 24.247 Atomic orbital electron populations 1.21752 0.92633 1.02681 1.03665 1.22850 0.96135 0.81859 1.00844 1.86178 1.15710 1.27569 1.94087 1.18507 0.84731 1.08382 0.90615 1.17649 0.89953 1.02675 0.80528 1.91528 1.80560 1.93379 1.44820 1.21103 0.91669 1.03691 1.00092 1.19475 0.96438 0.94854 0.91041 1.21054 0.89721 0.90547 1.02308 1.62150 1.18402 1.09303 1.35754 1.22353 0.99684 0.96083 0.89215 1.21948 0.90517 0.92494 1.01665 1.62630 1.15894 1.15007 1.32572 1.20147 0.96617 0.83813 0.96616 1.21696 1.28275 0.92574 1.16382 0.90488 1.24981 0.95006 0.97951 0.95149 1.69930 1.40804 1.09806 1.33066 0.86803 0.81464 0.79913 0.81237 1.20232 1.21344 1.18944 1.21967 1.00181 0.91337 0.93300 1.22231 0.86401 0.97957 1.00017 1.21054 0.91374 1.02206 1.00233 1.17702 0.90069 1.02447 0.80508 1.91530 1.80590 1.93330 1.44762 0.90467 0.91412 0.91433 0.92661 0.92628 0.83609 0.93260 0.89216 0.94631 0.90933 0.92463 0.91327 0.95505 0.95716 0.92695 0.92736 0.91243 0.90918 0.94543 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.52 6.78 37.16 0.25 0.78 16 3 O -0.32 -4.05 9.79 -19.80 -0.19 -4.25 16 4 C 0.02 0.30 5.74 -39.14 -0.22 0.07 16 5 C 0.11 1.33 7.31 -39.31 -0.29 1.04 16 6 F -0.12 -1.54 17.11 2.25 0.04 -1.51 16 7 C -0.15 -1.53 7.89 -39.53 -0.31 -1.85 16 8 C -0.02 -0.18 4.89 -104.62 -0.51 -0.69 16 9 C 0.09 0.93 5.12 -4.98 -0.03 0.91 16 10 N -0.53 -7.41 4.70 -235.91 -1.11 -8.52 16 11 C 0.05 0.82 5.25 -3.77 -0.02 0.80 16 12 C 0.06 1.20 5.24 -3.77 -0.02 1.18 16 13 N -0.54 -10.91 4.92 -235.91 -1.16 -12.07 16 14 C 0.15 3.67 4.21 -4.98 -0.02 3.65 16 15 C -0.55 -15.20 8.21 -34.44 -0.28 -15.48 16 16 H 0.08 2.33 6.07 -52.49 -0.32 2.01 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 19 Si 0.88 21.36 27.37 -169.99 -4.65 16.70 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.26 -6.18 6.69 56.52 0.38 -5.80 16 23 C 0.06 1.12 5.32 -3.77 -0.02 1.10 16 24 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 25 C -0.13 -1.40 9.67 -39.53 -0.38 -1.78 16 26 C 0.11 1.37 7.31 -39.31 -0.29 1.08 16 27 F -0.12 -1.58 17.11 2.25 0.04 -1.55 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.15 1.32 7.99 -52.49 -0.42 0.90 16 34 H 0.05 0.45 8.06 -51.93 -0.42 0.03 16 35 H 0.09 0.77 7.97 -51.93 -0.41 0.36 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.02 5.95 -51.93 -0.31 0.72 16 38 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.03 0.64 7.52 -51.93 -0.39 0.25 16 41 H 0.02 0.59 7.29 -51.93 -0.38 0.21 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.05 1.17 6.78 -51.93 -0.35 0.82 16 44 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 45 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.15 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -31.27 382.08 -9.53 -40.81 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.15 Total: -1.66 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.88 Total: -7.09 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.50 Total: -47.21 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.19 Total: -4.25 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.65 Total: 16.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.27 -9.53 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144025480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.242 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds