Wall clock time and date at job start Tue Mar 31 2020 22:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47089 * 2 1 4 4 C 1.36018 * 116.99574 * 180.02562 * 3 2 1 5 5 C 1.38833 * 120.06620 * 90.00132 * 4 3 2 6 6 F 1.35103 * 120.03923 * 359.97438 * 5 4 3 7 7 C 1.38379 * 119.92575 * 179.97438 * 5 4 3 8 8 C 1.38250 * 120.06995 * 359.97438 * 7 5 4 9 9 C 1.50694 * 119.92910 * 180.02562 * 8 7 5 10 10 N 1.46906 * 109.47347 * 89.99993 * 9 8 7 11 11 C 1.46955 * 110.99868 * 293.79749 * 10 9 8 12 12 C 1.53053 * 109.36435 * 176.80906 * 11 10 9 13 13 N 1.46954 * 109.36389 * 58.40358 * 12 11 10 14 14 C 1.46896 * 111.00213 * 176.81137 * 13 12 11 15 15 C 1.50703 * 109.47022 * 58.99033 * 14 13 12 16 16 H 1.07997 * 119.99883 * 4.99350 * 15 14 13 17 17 C 1.37882 * 119.99730 * 184.98618 * 15 14 13 18 18 N 1.31515 * 119.99736 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00118 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47223 * 89.99677 * 19 17 15 21 21 H 1.48500 * 109.46857 * 209.99529 * 19 17 15 22 22 H 1.48501 * 109.47082 * 329.99167 * 19 17 15 23 23 C 1.46958 * 110.88210 * 300.67956 * 13 12 11 24 24 C 1.46954 * 111.00218 * 169.99933 * 10 9 8 25 25 C 1.38251 * 120.13781 * 0.27209 * 8 7 5 26 26 C 1.38368 * 120.07022 * 359.45710 * 25 8 7 27 27 F 1.35099 * 120.03524 * 180.27373 * 26 25 8 28 28 H 1.09000 * 109.47604 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47192 * 300.00554 * 1 2 3 30 30 H 1.09003 * 109.46947 * 59.99765 * 1 2 3 31 31 H 1.08997 * 109.46920 * 240.00026 * 2 1 3 32 32 H 1.09003 * 109.46947 * 120.00234 * 2 1 3 33 33 H 1.08002 * 119.96348 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47235 * 330.00064 * 9 8 7 35 35 H 1.09001 * 109.47512 * 209.99974 * 9 8 7 36 36 H 1.08994 * 109.49151 * 296.77829 * 11 10 9 37 37 H 1.09002 * 109.49075 * 56.84446 * 11 10 9 38 38 H 1.09000 * 109.48893 * 298.43579 * 12 11 10 39 39 H 1.08999 * 109.48926 * 178.36766 * 12 11 10 40 40 H 1.09000 * 109.47165 * 178.99411 * 14 13 12 41 41 H 1.09003 * 109.47339 * 298.98860 * 14 13 12 42 42 H 0.96996 * 120.00094 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.48533 * 299.35624 * 23 13 12 44 44 H 1.09002 * 109.49402 * 179.28691 * 23 13 12 45 45 H 1.09003 * 109.49094 * 303.15664 * 24 10 9 46 46 H 1.09000 * 109.48971 * 63.22134 * 24 10 9 47 47 H 1.08005 * 119.96284 * 179.72897 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3548 1.5254 -0.0005 5 6 4.0439 1.6166 -1.2023 6 9 3.3759 1.5282 -2.3733 7 6 5.4157 1.7984 -1.1995 8 6 6.0999 1.8896 -0.0017 9 6 7.5937 2.0881 -0.0023 10 7 7.8967 3.5255 -0.0028 11 6 7.4632 4.1547 -1.2581 12 6 7.7233 5.6613 -1.1870 13 7 9.1541 5.8980 -0.9493 14 6 9.4571 7.3353 -0.9498 15 6 8.6488 8.0195 0.1225 16 1 8.0388 7.4345 0.7948 17 6 8.6882 9.3923 0.2452 18 7 7.9825 9.9893 1.1806 19 14 9.7430 10.4041 -0.9181 20 1 8.9423 10.7822 -2.1101 21 1 10.2072 11.6320 -0.2238 22 1 10.9179 9.6025 -1.3448 23 6 9.5877 5.2688 0.3060 24 6 9.3274 3.7623 0.2349 25 6 5.4171 1.7939 1.1967 26 6 4.0447 1.6178 1.2006 27 9 3.3776 1.5300 2.3721 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.9522 1.8699 -2.1341 34 1 8.0212 1.6264 -0.8923 35 1 8.0219 1.6268 0.8877 36 1 8.0223 3.7280 -2.0907 37 1 6.3980 3.9762 -1.4055 38 1 7.1430 6.0924 -0.3712 39 1 7.4293 6.1259 -2.1281 40 1 10.5191 7.4828 -0.7541 41 1 9.2045 7.7596 -1.9216 42 1 8.0099 10.9551 1.2668 43 1 9.0285 5.6955 1.1387 44 1 10.6528 5.4473 0.4534 45 1 9.6216 3.2976 1.1760 46 1 9.9078 3.3311 -0.5809 47 1 5.9551 1.8612 2.1309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144025480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:23 Heat of formation + Delta-G solvation = -107.200333 kcal Electronic energy + Delta-G solvation = -29894.592548 eV Core-core repulsion = 25520.061124 eV Total energy + Delta-G solvation = -4374.531424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.13070 -50.09479 -40.99739 -40.14189 -38.88730 -36.62340 -34.49390 -33.10650 -31.89048 -31.65026 -31.38636 -29.83186 -27.48992 -25.39569 -24.62714 -24.08096 -23.99376 -23.12582 -22.38164 -20.65300 -19.44429 -18.91478 -18.74289 -18.56126 -17.47214 -17.13611 -16.95746 -16.45978 -16.27146 -16.19712 -16.16814 -16.03850 -15.78197 -15.70099 -15.62960 -15.43308 -14.65989 -14.39088 -14.22853 -14.13232 -13.70179 -13.61047 -13.51727 -13.12232 -13.10126 -12.81904 -12.75100 -12.60724 -12.54254 -12.38402 -12.20366 -12.08063 -12.00348 -11.73797 -11.60934 -11.37823 -11.10588 -10.78520 -9.90201 -9.84011 -9.24556 -8.97107 -8.30619 -6.35825 -0.35296 -0.18034 1.35864 1.36829 1.49111 1.95166 2.32834 2.34109 2.70890 3.04443 3.08742 3.22845 3.34455 3.46650 3.64672 3.99745 4.00969 4.07362 4.10642 4.19549 4.25793 4.28446 4.31359 4.42379 4.52732 4.58727 4.61305 4.64537 4.74556 4.76162 4.81870 4.86361 4.90916 4.91782 4.99035 5.05507 5.15213 5.15931 5.20629 5.23085 5.28047 5.45240 5.52854 6.02601 6.08788 6.19663 6.21191 6.35877 6.43408 6.72093 7.30920 8.85892 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.002525 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.901188 B =11085.572167 C =11518.530675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.343 6.343 4 C 0.015 3.985 5 C 0.098 3.902 6 F -0.131 7.131 7 C -0.135 4.135 8 C -0.020 4.020 9 C 0.096 3.904 10 N -0.553 5.553 11 C 0.068 3.932 12 C 0.063 3.937 13 N -0.528 5.528 14 C 0.160 3.840 15 C -0.546 4.546 16 H 0.032 0.968 17 C 0.007 3.993 18 N -0.950 5.950 19 Si 0.951 3.049 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.244 1.244 23 C 0.059 3.941 24 C 0.073 3.927 25 C -0.124 4.124 26 C 0.094 3.906 27 F -0.133 7.133 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.166 0.834 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.010 0.990 39 H 0.066 0.934 40 H 0.031 0.969 41 H 0.028 0.972 42 H 0.265 0.735 43 H 0.011 0.989 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.055 0.945 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 -25.887 -4.733 26.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.261 6.261 4 C -0.031 4.031 5 C 0.078 3.922 6 F -0.109 7.109 7 C -0.154 4.154 8 C -0.021 4.021 9 C -0.030 4.030 10 N -0.278 5.278 11 C -0.060 4.060 12 C -0.066 4.066 13 N -0.252 5.252 14 C 0.032 3.968 15 C -0.585 4.585 16 H 0.051 0.949 17 C -0.190 4.190 18 N -0.590 5.590 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.167 1.167 23 C -0.070 4.070 24 C -0.054 4.054 25 C -0.143 4.143 26 C 0.074 3.926 27 F -0.112 7.112 28 H 0.122 0.878 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.184 0.816 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.028 0.972 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.073 0.927 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.583 -25.622 -4.669 26.635 hybrid contribution -0.408 1.212 0.115 1.284 sum -5.991 -24.410 -4.554 25.544 Atomic orbital electron populations 1.21791 0.91259 1.04231 1.03127 1.23094 0.97273 0.80511 1.01454 1.86133 1.16032 1.29658 1.94243 1.18725 0.84847 1.08391 0.91132 1.17777 0.90574 1.03760 0.80124 1.91507 1.80824 1.93571 1.45026 1.21317 0.91024 1.02062 1.00979 1.19580 0.96881 0.94881 0.90771 1.21135 0.89220 0.88043 1.04630 1.62041 1.18412 1.12059 1.35320 1.22160 1.00560 0.92718 0.90586 1.21952 0.89109 0.95958 0.99601 1.62674 1.16440 1.12645 1.33404 1.20025 0.95897 0.85833 0.95019 1.21899 1.27628 0.92584 1.16402 0.94935 1.25971 0.96585 0.99417 0.97045 1.70095 1.43151 1.10242 1.35524 0.85649 0.80090 0.78049 0.78751 1.19348 1.21129 1.16693 1.22048 0.99713 0.94477 0.90772 1.22117 0.86847 0.94297 1.02150 1.21260 0.90847 1.01025 1.01162 1.17871 0.90692 1.03831 0.80196 1.91500 1.80889 1.93585 1.45185 0.87850 0.91996 0.91875 0.91925 0.92082 0.81630 0.90848 0.86955 0.92593 0.90177 0.97151 0.91559 0.95064 0.95356 0.92602 0.97047 0.90682 0.88357 0.92662 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.05 0.90 6.78 71.98 0.49 1.39 16 3 O -0.34 -8.86 9.79 -93.75 -0.92 -9.78 16 4 C 0.02 0.37 5.74 22.55 0.13 0.50 16 5 C 0.10 2.23 7.31 22.45 0.16 2.39 16 6 F -0.13 -3.16 17.11 44.97 0.77 -2.39 16 7 C -0.13 -2.51 7.89 22.31 0.18 -2.34 16 8 C -0.02 -0.37 4.89 -19.86 -0.10 -0.47 16 9 C 0.10 1.58 5.12 85.55 0.44 2.01 16 10 N -0.55 -13.96 4.70 -900.28 -4.23 -18.20 16 11 C 0.07 1.88 5.25 86.31 0.45 2.33 16 12 C 0.06 2.41 5.24 86.31 0.45 2.86 16 13 N -0.53 -21.12 4.92 -900.28 -4.43 -25.54 16 14 C 0.16 7.54 4.21 85.56 0.36 7.90 16 15 C -0.55 -31.21 8.21 25.60 0.21 -31.00 16 16 H 0.03 2.11 6.07 -2.91 -0.02 2.09 16 17 C 0.01 0.43 5.47 84.66 0.46 0.90 16 18 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 19 Si 0.95 44.08 27.37 68.60 1.88 45.96 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.24 -10.37 6.69 99.48 0.67 -9.71 16 23 C 0.06 2.12 5.32 86.31 0.46 2.58 16 24 C 0.07 1.85 5.61 86.31 0.48 2.33 16 25 C -0.12 -2.50 9.67 22.30 0.22 -2.28 16 26 C 0.09 2.26 7.31 22.44 0.16 2.42 16 27 F -0.13 -3.46 17.11 44.97 0.77 -2.69 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.90 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.17 2.40 7.99 -2.91 -0.02 2.38 16 34 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 35 H 0.11 1.40 7.97 -2.39 -0.02 1.38 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 2.10 5.95 -2.39 -0.01 2.08 16 38 H 0.01 0.48 6.62 -2.39 -0.02 0.47 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.03 1.45 7.52 -2.39 -0.02 1.43 16 41 H 0.03 1.32 7.29 -2.39 -0.02 1.30 16 42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.01 0.50 6.78 -2.39 -0.02 0.48 16 44 H 0.07 2.58 8.12 -2.39 -0.02 2.56 16 45 H 0.10 2.01 8.07 -2.39 -0.02 1.99 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -71.54 382.08 0.37 -71.17 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.93 Total: 11.00 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.30 Total: -9.75 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -8.36 Total: -103.53 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.92 Total: -9.78 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 1.54 Total: -5.08 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Total: -71.54 0.37 -71.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144025480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.035 kcal (2) G-P(sol) polarization free energy of solvation -71.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds