Wall clock time and date at job start Tue Mar 31 2020 23:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42909 * 114.00128 * 2 1 4 4 C 1.52998 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46905 * 184.35783 * 4 3 2 6 6 N 1.46502 * 109.44869 * 302.59011 * 5 4 3 7 7 C 1.34771 * 120.00065 * 296.77300 * 6 5 4 8 8 O 1.21740 * 120.00192 * 5.17720 * 7 6 5 9 9 C 1.46378 * 120.00026 * 185.17443 * 7 6 5 10 10 C 1.33974 * 119.23167 * 359.97438 * 9 7 6 11 11 O 1.35004 * 121.68541 * 180.39221 * 10 9 7 12 12 C 1.43247 * 116.76436 * 342.79866 * 11 10 9 13 13 C 1.53546 * 108.08814 * 45.48963 * 12 11 10 14 14 O 1.36213 * 119.23242 * 179.73468 * 9 7 6 15 15 C 1.53039 * 109.45956 * 62.55389 * 5 4 3 16 16 C 1.53192 * 109.31488 * 181.38337 * 15 5 4 17 17 N 1.46928 * 108.77742 * 305.36990 * 16 15 5 18 18 C 1.36937 * 120.63039 * 233.58394 * 17 16 15 19 19 H 1.07995 * 119.99748 * 31.71431 * 18 17 16 20 20 C 1.38810 * 119.99927 * 211.98888 * 18 17 16 21 21 N 1.31625 * 119.99645 * 10.44593 * 20 18 17 22 22 Si 1.86790 * 120.00096 * 190.44685 * 20 18 17 23 23 H 1.48498 * 109.47140 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47188 * 120.00091 * 22 20 18 25 25 H 1.48502 * 109.47512 * 239.99940 * 22 20 18 26 26 C 1.46928 * 118.73468 * 53.85397 * 17 16 15 27 27 C 1.53033 * 109.45968 * 182.62529 * 5 4 3 28 28 H 1.09004 * 109.46847 * 299.99828 * 1 2 3 29 29 H 1.09001 * 109.47341 * 59.99747 * 1 2 3 30 30 H 1.08994 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46220 * 59.99962 * 3 2 1 32 32 H 1.08999 * 109.47228 * 300.00847 * 3 2 1 33 33 H 1.08996 * 109.47014 * 64.36463 * 4 3 2 34 34 H 1.08992 * 109.47184 * 304.35686 * 4 3 2 35 35 H 0.97004 * 120.00118 * 116.77349 * 6 5 4 36 36 H 1.08000 * 119.15853 * 0.37322 * 10 9 7 37 37 H 1.09005 * 109.73335 * 165.13971 * 12 11 10 38 38 H 1.08999 * 109.73804 * 285.83983 * 12 11 10 39 39 H 1.09001 * 109.75693 * 61.47356 * 13 12 11 40 40 H 1.09003 * 109.75300 * 182.16632 * 13 12 11 41 41 H 1.09005 * 109.49672 * 61.43521 * 15 5 4 42 42 H 1.09000 * 109.50288 * 301.33948 * 15 5 4 43 43 H 1.08997 * 109.59122 * 185.57906 * 16 15 5 44 44 H 1.09004 * 109.57924 * 65.15381 * 16 15 5 45 45 H 0.97003 * 119.99767 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.58428 * 65.93399 * 26 17 16 47 47 H 1.09007 * 109.58029 * 186.35445 * 26 17 16 48 48 H 1.09004 * 109.49990 * 298.56532 * 27 5 4 49 49 H 1.09000 * 109.50323 * 58.66099 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1574 2.5783 0.1103 6 7 3.6833 3.4125 -0.9968 7 6 3.9843 3.0802 -2.2678 8 8 4.5685 2.0383 -2.5026 9 6 3.6087 3.9721 -3.3660 10 6 2.9657 5.1147 -3.0902 11 8 2.5892 5.9696 -4.0649 12 6 3.2197 5.8107 -5.3413 13 6 3.2252 4.3148 -5.6874 14 8 3.9254 3.6235 -4.6441 15 6 3.7488 3.2158 1.4402 16 6 4.3447 4.6241 1.5313 17 7 5.7968 4.5375 1.3245 18 6 6.6647 5.0760 2.2366 19 1 6.4009 5.1009 3.2836 20 6 7.8811 5.5948 1.8148 21 7 8.1165 5.7591 0.5302 22 14 9.1838 6.0600 3.0701 23 1 8.6763 5.7796 4.4372 24 1 10.4132 5.2635 2.8259 25 1 9.4979 7.5060 2.9450 26 6 6.2996 3.8675 0.1175 27 6 5.6820 2.4628 0.0450 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8629 0.7126 -0.9256 34 1 3.8515 0.5781 0.8492 35 1 3.1528 4.2040 -0.8151 36 1 2.7425 5.3579 -2.0619 37 1 2.6619 6.3618 -6.0985 38 1 4.2436 6.1816 -5.2948 39 1 2.2008 3.9481 -5.7536 40 1 3.7344 4.1586 -6.6385 41 1 4.1225 2.6086 2.2647 42 1 2.6619 3.2764 1.4960 43 1 4.1402 5.0445 2.5160 44 1 3.9032 5.2580 0.7622 45 1 8.9664 6.1220 0.2354 46 1 6.0144 4.4411 -0.7645 47 1 7.3856 3.7885 0.1691 48 1 6.0376 1.8627 0.8826 49 1 5.9711 1.9874 -0.8923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150925030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:43 Heat of formation + Delta-G solvation = -102.957766 kcal Electronic energy + Delta-G solvation = -32183.935251 eV Core-core repulsion = 27920.675314 eV Total energy + Delta-G solvation = -4263.259937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16671 -40.07112 -37.87216 -37.35235 -36.75488 -34.54693 -33.07881 -31.59718 -31.14430 -30.09992 -29.05196 -28.41178 -26.52440 -25.44413 -24.81236 -23.14540 -22.49146 -21.87656 -20.50812 -19.65664 -18.81866 -18.41892 -18.06679 -16.86253 -16.46096 -16.34001 -15.92604 -15.57759 -15.05470 -14.97679 -14.84675 -14.63511 -14.36338 -14.23591 -13.98842 -13.84728 -13.54705 -13.43296 -13.14533 -12.93070 -12.68801 -12.34731 -12.23024 -11.65992 -11.50837 -11.43358 -11.14346 -11.04473 -11.02811 -10.87170 -10.76905 -10.69927 -10.34333 -10.26413 -9.98762 -9.76309 -9.73722 -9.43827 -9.14459 -8.68816 -8.47358 -8.19620 -6.60990 -5.77403 -3.26671 1.38185 2.72526 3.06061 3.36948 3.44750 3.46346 3.46656 3.80154 3.85906 4.16181 4.48643 4.66465 4.73860 4.79744 5.02361 5.08097 5.15032 5.18547 5.24008 5.32255 5.33368 5.35603 5.37175 5.46791 5.50961 5.55704 5.61857 5.75852 5.83881 5.99359 6.13206 6.17654 6.34210 6.39156 6.51900 6.63225 6.65924 6.68484 6.80524 6.88979 7.04131 7.20869 7.26565 7.43154 7.74147 7.79121 7.82540 8.48288 8.49488 9.22874 9.84016 10.42013 11.29855 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.004521 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.610585 B = 6191.825446 C = 8516.086064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.065 3.935 4 C -0.130 4.130 5 C 0.198 3.802 6 N -0.706 5.706 7 C 0.579 3.421 8 O -0.517 6.517 9 C -0.063 4.063 10 C 0.001 3.999 11 O -0.302 6.302 12 C 0.013 3.987 13 C 0.019 3.981 14 O -0.284 6.284 15 C -0.141 4.141 16 C 0.146 3.854 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.006 3.994 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.179 3.821 27 C -0.153 4.153 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.394 0.606 36 H 0.178 0.822 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.012 0.988 45 H 0.253 0.747 46 H 0.017 0.983 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.940 -3.141 -8.369 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.168 4.168 5 C 0.113 3.887 6 N -0.361 5.361 7 C 0.365 3.635 8 O -0.393 6.393 9 C -0.112 4.112 10 C -0.065 4.065 11 O -0.214 6.214 12 C -0.062 4.062 13 C -0.057 4.057 14 O -0.198 6.198 15 C -0.181 4.181 16 C 0.019 3.981 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.054 3.946 27 C -0.193 4.193 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.230 0.770 36 H 0.194 0.806 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.105 0.895 48 H 0.082 0.918 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.219 -3.964 -8.653 17.950 hybrid contribution 0.220 1.102 0.429 1.203 sum -14.998 -2.862 -8.224 17.343 Atomic orbital electron populations 1.22689 0.81686 1.02345 0.99696 1.87886 1.19159 1.28734 1.95368 1.22610 0.94714 0.84030 0.99723 1.22009 0.92376 0.97694 1.04743 1.20246 0.95502 0.87963 0.84949 1.45925 1.55467 1.29848 1.04812 1.16972 0.79630 0.85124 0.81725 1.90781 1.40445 1.24301 1.83805 1.20561 1.08374 0.95720 0.86499 1.23109 1.01099 0.88537 0.93791 1.86083 1.62147 1.53375 1.19803 1.23716 1.00225 0.97428 0.84868 1.23648 0.98664 0.92052 0.91376 1.86476 1.61122 1.61112 1.11072 1.22439 0.99252 1.00608 0.95780 1.20875 0.86624 0.91929 0.98678 1.44041 0.99020 1.64324 1.23886 1.19196 0.97989 1.32735 0.88530 0.91813 1.25174 0.99916 0.98387 0.95816 1.69994 1.23779 1.47881 1.12931 0.86218 0.81832 0.77777 0.80889 1.20249 1.21582 1.21721 1.20793 0.99466 0.86674 0.87689 1.22687 0.92269 1.02165 1.02158 0.94268 0.94430 0.89965 0.93217 0.93836 0.89174 0.90516 0.76984 0.80574 0.86289 0.89909 0.90675 0.86228 0.90238 0.92423 0.92481 0.96988 0.93675 0.96460 0.89544 0.91763 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.58 10.70 -35.23 -0.38 -5.96 16 3 C 0.07 0.89 5.50 37.16 0.20 1.09 16 4 C -0.13 -2.02 4.43 -26.73 -0.12 -2.14 16 5 C 0.20 3.25 0.35 -131.78 -0.05 3.21 16 6 N -0.71 -10.83 3.19 -48.95 -0.16 -10.99 16 7 C 0.58 10.05 7.03 -12.99 -0.09 9.96 16 8 O -0.52 -10.66 13.18 -10.06 -0.13 -10.79 16 9 C -0.06 -0.97 6.61 -37.81 -0.25 -1.22 16 10 C 0.00 0.01 10.57 29.23 0.31 0.32 16 11 O -0.30 -3.62 10.47 -30.84 -0.32 -3.94 16 12 C 0.01 0.12 7.29 37.44 0.27 0.39 16 13 C 0.02 0.18 7.32 37.44 0.27 0.46 16 14 O -0.28 -4.37 10.29 -45.75 -0.47 -4.84 16 15 C -0.14 -2.19 4.69 -26.61 -0.12 -2.32 16 16 C 0.15 2.76 6.24 -3.71 -0.02 2.73 16 17 N -0.59 -14.10 2.98 -172.05 -0.51 -14.61 16 18 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 19 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 20 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 21 N -0.90 -26.04 11.06 55.49 0.61 -25.42 16 22 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.18 4.29 5.02 -3.49 -0.02 4.27 16 27 C -0.15 -3.07 4.63 -26.39 -0.12 -3.20 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.61 6.25 -51.93 -0.32 0.28 16 32 H 0.04 0.58 7.68 -51.93 -0.40 0.19 16 33 H 0.09 1.62 6.30 -51.93 -0.33 1.29 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.39 5.15 5.23 -40.82 -0.21 4.94 16 36 H 0.18 1.92 6.09 -52.49 -0.32 1.60 16 37 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 43 H 0.06 1.07 7.93 -51.93 -0.41 0.65 16 44 H 0.01 0.22 7.00 -51.93 -0.36 -0.14 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.44 7.63 -51.93 -0.40 0.04 16 47 H 0.09 2.38 6.13 -51.92 -0.32 2.07 16 48 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.07 1.58 6.15 -51.93 -0.32 1.26 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -33.86 378.39 -7.03 -40.89 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.50 Total: 5.31 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 1.15 Total: 8.14 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.05 Total: -51.03 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -1.30 Total: -25.53 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.86 -7.03 -40.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150925030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.067 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds