Wall clock time and date at job start Tue Mar 31 2020 22:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47067 * 2 1 4 4 C 1.36934 * 120.00076 * 275.91195 * 3 2 1 5 5 H 1.08004 * 119.99668 * 34.07788 * 4 3 2 6 6 C 1.38811 * 120.00398 * 214.07374 * 4 3 2 7 7 N 1.31617 * 119.99519 * 17.04426 * 6 4 3 8 8 Si 1.86795 * 120.00395 * 197.04104 * 6 4 3 9 9 H 1.48501 * 109.47233 * 59.99795 * 8 6 4 10 10 H 1.48497 * 109.47334 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47083 * 300.00277 * 8 6 4 12 12 C 1.46508 * 120.00017 * 95.91064 * 3 2 1 13 13 H 1.09002 * 109.46969 * 177.14571 * 12 3 2 14 14 C 1.53000 * 109.46622 * 57.15114 * 12 3 2 15 15 C 1.53000 * 109.47299 * 297.14943 * 12 3 2 16 16 N 1.46497 * 109.47086 * 305.00061 * 15 12 3 17 17 C 1.34775 * 119.99915 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99968 * 179.97438 * 17 16 15 20 20 C 1.52995 * 109.46870 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.46870 * 180.02562 * 20 19 17 22 22 C 1.38235 * 119.98539 * 264.73062 * 21 20 19 23 23 C 1.38186 * 120.04605 * 179.72831 * 22 21 20 24 24 C 1.38499 * 120.02690 * 0.54592 * 23 22 21 25 25 F 1.35094 * 120.01187 * 179.75435 * 24 23 22 26 26 C 1.38401 * 119.97057 * 359.72542 * 24 23 22 27 27 C 1.38439 * 119.95104 * 0.02562 * 26 24 23 28 28 F 1.35106 * 120.01043 * 179.97438 * 27 26 24 29 29 H 1.09002 * 109.46783 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47070 * 299.99850 * 1 2 3 31 31 H 1.08994 * 109.47172 * 60.00449 * 1 2 3 32 32 H 1.08998 * 109.47522 * 239.99545 * 2 1 3 33 33 H 1.09008 * 109.47311 * 119.99581 * 2 1 3 34 34 H 0.97005 * 120.00024 * 180.02562 * 7 6 4 35 35 H 1.09007 * 109.46609 * 179.97438 * 14 12 3 36 36 H 1.08994 * 109.47633 * 299.99495 * 14 12 3 37 37 H 1.08992 * 109.47541 * 60.00200 * 14 12 3 38 38 H 1.09001 * 109.46587 * 64.99923 * 15 12 3 39 39 H 1.08994 * 109.47331 * 184.99772 * 15 12 3 40 40 H 0.97003 * 120.00082 * 359.97438 * 16 15 12 41 41 H 1.08995 * 109.47215 * 300.00339 * 19 17 16 42 42 H 1.09001 * 109.47087 * 60.00030 * 19 17 16 43 43 H 1.08995 * 109.47861 * 300.00413 * 20 19 17 44 44 H 1.09001 * 109.46858 * 60.00358 * 20 19 17 45 45 H 1.07997 * 119.97331 * 359.97438 * 22 21 20 46 46 H 1.08002 * 119.98784 * 180.25302 * 23 22 21 47 47 H 1.08002 * 120.02012 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8926 -1.9760 6 6 3.1560 2.9880 -1.3517 7 7 4.1988 2.9695 -0.5488 8 14 3.0551 4.2527 -2.7226 9 1 1.8458 5.0934 -2.5325 10 1 4.2657 5.1121 -2.6934 11 1 2.9736 3.5574 -4.0324 12 6 2.3857 2.0283 1.2621 13 1 2.7712 3.0275 1.0593 14 6 3.4621 1.1994 1.9656 15 6 1.1518 2.1304 2.1610 16 7 0.0790 2.8210 1.4410 17 6 -1.1105 3.0272 2.0402 18 8 -1.2930 2.6407 3.1752 19 6 -2.2140 3.7382 1.2998 20 6 -3.4479 3.8401 2.1987 21 6 -4.5515 4.5505 1.4581 22 6 -4.7315 5.9109 1.6252 23 6 -5.7395 6.5645 0.9425 24 6 -6.5779 5.8552 0.0986 25 9 -7.5664 6.4937 -0.5649 26 6 -6.4021 4.4922 -0.0651 27 6 -5.3887 3.8393 0.6154 28 9 -5.2163 2.5087 0.4569 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.9147 3.6130 -0.6687 35 1 3.7358 1.6811 2.9044 36 1 3.0767 0.2003 2.1684 37 1 4.3411 1.1267 1.3253 38 1 0.8190 1.1296 2.4362 39 1 1.4037 2.6901 3.0617 40 1 0.2249 3.1305 0.5334 41 1 -1.8809 4.7388 1.0245 42 1 -2.4664 3.1786 0.3991 43 1 -3.7809 2.8394 2.4737 44 1 -3.1958 4.3995 3.0997 45 1 -4.0812 6.4639 2.2868 46 1 -5.8766 7.6281 1.0706 47 1 -7.0552 3.9384 -0.7233 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156125617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:38 Heat of formation + Delta-G solvation = -109.409255 kcal Electronic energy + Delta-G solvation = -29924.452971 eV Core-core repulsion = 25549.825761 eV Total energy + Delta-G solvation = -4374.627210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.04103 -50.01102 -40.80274 -39.89150 -38.57571 -35.21909 -34.90331 -33.72178 -32.69045 -31.84326 -30.52497 -29.89316 -27.28886 -25.77750 -25.13463 -24.19039 -23.30607 -22.40166 -21.11155 -20.84245 -19.21739 -18.76620 -18.28539 -18.01052 -17.16130 -16.99180 -16.82434 -16.58437 -16.47031 -16.28977 -16.18603 -15.96928 -15.45404 -15.29680 -14.85766 -14.54585 -14.45869 -14.30039 -13.99222 -13.74309 -13.59455 -13.51147 -13.42730 -13.12695 -12.77855 -12.74162 -12.73108 -12.58289 -12.50490 -12.38404 -12.33603 -12.07560 -11.96743 -11.83193 -11.34740 -11.15706 -10.80481 -10.40786 -10.07502 -9.83878 -9.61864 -8.49722 -7.80187 -5.31695 -0.09889 0.00722 1.52292 1.55422 1.59977 1.77147 2.28214 2.51156 2.57098 2.85593 3.33859 3.40023 3.56828 3.59300 3.68589 3.88941 3.97676 4.08830 4.20974 4.27749 4.32514 4.47181 4.59933 4.65058 4.70569 4.71472 4.81897 4.84090 4.90309 4.92695 4.93796 4.94441 5.00759 5.06818 5.07243 5.15822 5.23393 5.30898 5.33334 5.55501 5.62530 5.72995 5.76194 5.78762 5.87307 6.52327 6.78506 7.25990 7.39451 7.94486 8.47619 9.23144 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002881 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.145389 B = 9717.653634 C =10662.839742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.263 4.263 5 H 0.060 0.940 6 C -0.029 4.029 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.301 1.301 11 H -0.285 1.285 12 C 0.179 3.821 13 H 0.073 0.927 14 C -0.136 4.136 15 C 0.115 3.885 16 N -0.702 5.702 17 C 0.506 3.494 18 O -0.591 6.591 19 C -0.129 4.129 20 C -0.055 4.055 21 C -0.126 4.126 22 C -0.052 4.052 23 C -0.152 4.152 24 C 0.113 3.887 25 F -0.138 7.138 26 C -0.194 4.194 27 C 0.114 3.886 28 F -0.140 7.140 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.044 0.956 34 H 0.249 0.751 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.410 0.590 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.171 0.829 46 H 0.168 0.832 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 6.505 3.819 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.394 4.394 5 H 0.077 0.923 6 C -0.227 4.227 7 N -0.558 5.558 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.227 1.227 11 H -0.211 1.211 12 C 0.072 3.928 13 H 0.091 0.909 14 C -0.195 4.195 15 C -0.011 4.011 16 N -0.352 5.352 17 C 0.294 3.706 18 O -0.473 6.473 19 C -0.169 4.169 20 C -0.093 4.093 21 C -0.127 4.127 22 C -0.069 4.069 23 C -0.170 4.170 24 C 0.093 3.907 25 F -0.117 7.117 26 C -0.214 4.214 27 C 0.095 3.905 28 F -0.119 7.119 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.246 0.754 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.085 0.915 44 H 0.112 0.888 45 H 0.189 0.811 46 H 0.186 0.814 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.097 6.278 4.559 19.690 hybrid contribution 0.315 0.243 -1.488 1.540 sum -17.783 6.521 3.071 19.188 Atomic orbital electron populations 1.22228 0.98121 1.00167 1.00774 1.20840 0.92987 0.86392 0.98530 1.43973 1.76071 1.09043 1.02076 1.19201 1.07221 1.18669 0.94273 0.92253 1.25712 0.94365 1.02955 0.99649 1.70130 1.07721 1.36795 1.41203 0.85610 0.76691 0.79666 0.79956 1.19803 1.22729 1.21136 1.20391 0.90079 0.97965 0.84371 0.90863 1.21875 0.99586 0.98926 0.99118 1.21862 0.88771 0.95622 0.94818 1.45993 1.12541 1.57800 1.18845 1.21075 0.83782 0.79223 0.86515 1.90633 1.82434 1.53954 1.20306 1.21628 0.92851 1.02897 0.99483 1.20144 0.90651 1.00959 0.97496 1.20084 0.98032 0.95422 0.99185 1.21145 0.96452 0.91816 0.97532 1.21516 0.95637 1.02567 0.97321 1.17477 0.88361 0.89877 0.94939 1.91519 1.59479 1.81704 1.78963 1.21131 1.01187 0.94436 1.04630 1.17389 0.96865 0.77637 0.98636 1.91517 1.94873 1.31204 1.94262 0.92759 0.93651 0.94080 0.95225 0.93779 0.94208 0.93017 0.93817 0.93634 0.93402 0.92962 0.75374 0.86605 0.88692 0.91528 0.88801 0.81131 0.81430 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.95 71.98 0.72 -4.59 16 2 C 0.14 5.43 5.75 86.38 0.50 5.93 16 3 N -0.59 -25.91 1.88 -678.01 -1.28 -27.19 16 4 C -0.26 -12.78 9.07 84.03 0.76 -12.02 16 5 H 0.06 2.89 7.89 -2.91 -0.02 2.86 16 6 C -0.03 -1.45 4.86 84.86 0.41 -1.04 16 7 N -0.91 -48.49 10.90 21.65 0.24 -48.26 16 8 Si 0.95 40.91 29.59 68.60 2.03 42.94 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.18 7.51 1.95 44.99 0.09 7.60 16 13 H 0.07 3.54 5.94 -2.39 -0.01 3.53 16 14 C -0.14 -5.42 9.05 71.98 0.65 -4.77 16 15 C 0.12 4.29 4.36 86.38 0.38 4.67 16 16 N -0.70 -24.11 4.28 -463.07 -1.98 -26.10 16 17 C 0.51 16.20 7.78 87.66 0.68 16.88 16 18 O -0.59 -22.48 15.98 -3.03 -0.05 -22.53 16 19 C -0.13 -3.03 5.68 29.85 0.17 -2.86 16 20 C -0.05 -1.17 4.41 29.85 0.13 -1.04 16 21 C -0.13 -2.30 5.14 -19.81 -0.10 -2.40 16 22 C -0.05 -0.68 9.68 22.26 0.22 -0.46 16 23 C -0.15 -1.93 10.03 22.32 0.22 -1.71 16 24 C 0.11 1.86 7.30 22.37 0.16 2.02 16 25 F -0.14 -2.45 17.27 44.97 0.78 -1.67 16 26 C -0.19 -3.47 10.01 22.36 0.22 -3.24 16 27 C 0.11 2.33 7.24 22.37 0.16 2.49 16 28 F -0.14 -3.38 16.56 44.97 0.74 -2.63 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.04 1.61 5.32 -2.39 -0.01 1.60 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.03 1.22 8.09 -2.39 -0.02 1.20 16 33 H 0.04 1.66 6.29 -2.38 -0.01 1.65 16 34 H 0.25 13.07 8.31 -92.70 -0.77 12.30 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.04 1.60 6.56 -2.39 -0.02 1.58 16 37 H 0.04 2.08 7.69 -2.39 -0.02 2.06 16 38 H 0.05 1.83 6.98 -2.39 -0.02 1.81 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.41 14.52 7.74 -92.71 -0.72 13.80 16 41 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.07 1.68 7.74 -2.39 -0.02 1.66 16 44 H 0.09 1.88 8.01 -2.39 -0.02 1.86 16 45 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 46 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 47 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -58.70 389.61 6.13 -52.58 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.27 Total: 27.41 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.37 Total: 5.45 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -3.02 Total: -101.54 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 1.52 Total: -4.31 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -58.70 6.13 -52.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156125617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.832 kcal (2) G-P(sol) polarization free energy of solvation -58.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds