Wall clock time and date at job start Tue Mar 31 2020 22:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46812 * 2 1 4 4 C 1.36932 * 120.00210 * 275.91910 * 3 2 1 5 5 H 1.08005 * 120.00174 * 32.70206 * 4 3 2 6 6 C 1.38815 * 119.99974 * 212.69927 * 4 3 2 7 7 N 1.31618 * 120.00004 * 17.94926 * 6 4 3 8 8 Si 1.86801 * 120.00175 * 197.94775 * 6 4 3 9 9 H 1.48498 * 109.46908 * 89.99807 * 8 6 4 10 10 H 1.48499 * 109.47296 * 210.00141 * 8 6 4 11 11 H 1.48504 * 109.47025 * 330.00145 * 8 6 4 12 12 C 1.46504 * 119.99505 * 95.92025 * 3 2 1 13 13 H 1.09003 * 109.46661 * 174.89115 * 12 3 2 14 14 C 1.53001 * 109.47235 * 54.89389 * 12 3 2 15 15 C 1.53000 * 109.47107 * 294.88997 * 12 3 2 16 16 N 1.46504 * 109.47043 * 304.99804 * 15 12 3 17 17 C 1.34778 * 119.99816 * 179.97438 * 16 15 12 18 18 O 1.21282 * 120.00172 * 0.02562 * 17 16 15 19 19 C 1.50692 * 119.99785 * 180.02562 * 17 16 15 20 20 H 1.09000 * 109.47449 * 300.00304 * 19 17 16 21 21 C 1.53003 * 109.47454 * 60.00387 * 19 17 16 22 22 C 1.50705 * 109.47190 * 180.02562 * 19 17 16 23 23 C 1.38230 * 119.98433 * 299.72722 * 22 19 17 24 24 C 1.38190 * 120.04401 * 179.76371 * 23 22 19 25 25 C 1.38494 * 120.02642 * 0.51061 * 24 23 22 26 26 F 1.35101 * 120.00849 * 179.76827 * 25 24 23 27 27 C 1.38391 * 119.97718 * 359.74104 * 25 24 23 28 28 C 1.38448 * 119.94827 * 0.02562 * 27 25 24 29 29 F 1.35097 * 120.00992 * 180.02562 * 28 27 25 30 30 H 1.08998 * 109.46578 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46766 * 299.99345 * 1 2 3 32 32 H 1.08999 * 109.47042 * 59.99738 * 1 2 3 33 33 H 1.08999 * 109.47042 * 120.00262 * 2 1 3 34 34 H 1.08997 * 109.46766 * 240.00655 * 2 1 3 35 35 H 0.97001 * 120.00424 * 179.97438 * 7 6 4 36 36 H 1.08997 * 109.46634 * 299.99485 * 14 12 3 37 37 H 1.08998 * 109.47262 * 59.99535 * 14 12 3 38 38 H 1.08994 * 109.46996 * 179.97438 * 14 12 3 39 39 H 1.08994 * 109.47423 * 65.00099 * 15 12 3 40 40 H 1.09002 * 109.46728 * 185.00417 * 15 12 3 41 41 H 0.96994 * 119.99940 * 0.02562 * 16 15 12 42 42 H 1.09001 * 109.47624 * 179.97438 * 21 19 17 43 43 H 1.09000 * 109.46902 * 300.00355 * 21 19 17 44 44 H 1.09000 * 109.46860 * 59.99556 * 21 19 17 45 45 H 1.07994 * 119.98106 * 0.02562 * 23 22 19 46 46 H 1.08007 * 119.98465 * 180.25099 * 24 23 22 47 47 H 1.07995 * 120.02993 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1312 2.0676 -1.1795 5 1 1.4364 1.8767 -1.9841 6 6 3.1387 3.0088 -1.3412 7 7 4.1806 3.0022 -0.5371 8 14 3.0157 4.2847 -2.7000 9 1 2.3143 5.4886 -2.1865 10 1 4.3797 4.6609 -3.1508 11 1 2.2552 3.7186 -3.8431 12 6 2.3858 2.0282 1.2621 13 1 2.8085 3.0117 1.0565 14 6 3.4213 1.1706 1.9922 15 6 1.1409 2.1810 2.1383 16 7 0.1046 2.9003 1.3932 17 6 -1.0876 3.1517 1.9692 18 8 -1.3025 2.7829 3.1044 19 6 -2.1537 3.8911 1.2026 20 1 -1.7828 4.8774 0.9237 21 6 -2.5118 3.1050 -0.0603 22 6 -3.3799 4.0418 2.0657 23 6 -4.0333 2.9196 2.5396 24 6 -5.1549 3.0563 3.3351 25 6 -5.6318 4.3179 3.6496 26 9 -6.7312 4.4511 4.4235 27 6 -4.9816 5.4420 3.1714 28 6 -3.8551 5.3040 2.3785 29 9 -3.2190 6.4005 1.9115 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8933 -0.5137 -0.8900 35 1 4.8848 3.6597 -0.6502 36 1 2.9986 0.1871 2.1977 37 1 4.3082 1.0617 1.3680 38 1 3.6950 1.6521 2.9309 39 1 0.7696 1.1949 2.4171 40 1 1.3963 2.7409 3.0379 41 1 0.2764 3.1949 0.4852 42 1 -3.2833 3.6396 -0.6146 43 1 -1.6248 2.9964 -0.6843 44 1 -2.8828 2.1188 0.2187 45 1 -3.6645 1.9353 2.2915 46 1 -5.6623 2.1788 3.7082 47 1 -5.3525 6.4262 3.4166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157001018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:57 Heat of formation + Delta-G solvation = -90.745937 kcal Electronic energy + Delta-G solvation = -30874.242870 eV Core-core repulsion = 26500.424962 eV Total energy + Delta-G solvation = -4373.817908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.16288 -49.12941 -40.04423 -38.52742 -36.92628 -34.11054 -33.64032 -31.95694 -31.10238 -30.90528 -29.15284 -28.23869 -25.84798 -24.46127 -23.97355 -23.25736 -22.11242 -21.61709 -19.62245 -19.18609 -18.39103 -17.54143 -17.07535 -16.57202 -16.15903 -15.99683 -15.79795 -15.42969 -15.21970 -14.85767 -14.67593 -14.56639 -14.29631 -13.95405 -13.75438 -13.23932 -12.93625 -12.89319 -12.71772 -12.47500 -12.40037 -12.13205 -12.00791 -11.88251 -11.79897 -11.58115 -11.31618 -11.19485 -11.09966 -11.01874 -10.85844 -10.70678 -10.32010 -10.08306 -9.69939 -9.49805 -9.40504 -9.17982 -8.72827 -8.56734 -8.39881 -6.72657 -5.92855 -3.42089 0.79247 0.89467 3.01877 3.17591 3.27118 3.35969 3.37409 3.69839 3.78967 4.24046 4.36916 4.38376 4.44140 4.67656 4.95203 5.13173 5.15061 5.21071 5.24356 5.35840 5.58209 5.67729 5.74440 5.76304 5.81438 5.87654 5.91782 6.00916 6.12851 6.16554 6.19962 6.21878 6.33365 6.44112 6.48078 6.56444 6.61557 6.62679 6.78352 6.86672 7.04233 7.10791 7.40802 7.53216 7.70527 8.13512 8.38258 8.70474 9.10477 9.72593 10.29468 11.12695 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.003269 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.929432 B = 8564.293846 C = 9351.413395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.139 3.861 3 N -0.581 5.581 4 C -0.263 4.263 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.170 3.830 13 H 0.107 0.893 14 C -0.144 4.144 15 C 0.103 3.897 16 N -0.696 5.696 17 C 0.512 3.488 18 O -0.554 6.554 19 C -0.076 4.076 20 H 0.108 0.892 21 C -0.140 4.140 22 C -0.099 4.099 23 C -0.026 4.026 24 C -0.163 4.163 25 C 0.124 3.876 26 F -0.135 7.135 27 C -0.195 4.195 28 C 0.134 3.866 29 F -0.129 7.129 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.255 0.745 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.412 0.588 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 1.017 4.519 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.012 3.988 3 N -0.303 5.303 4 C -0.393 4.393 5 H 0.083 0.917 6 C -0.190 4.190 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.203 1.203 12 C 0.062 3.938 13 H 0.125 0.875 14 C -0.203 4.203 15 C -0.023 4.023 16 N -0.346 5.346 17 C 0.296 3.704 18 O -0.433 6.433 19 C -0.098 4.098 20 H 0.126 0.874 21 C -0.198 4.198 22 C -0.101 4.101 23 C -0.045 4.045 24 C -0.182 4.182 25 C 0.104 3.896 26 F -0.114 7.114 27 C -0.215 4.215 28 C 0.114 3.886 29 F -0.108 7.108 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.249 0.751 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.160 0.840 46 H 0.159 0.841 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.002 0.890 5.303 15.936 hybrid contribution 0.070 1.137 -0.986 1.507 sum -14.931 2.027 4.317 15.675 Atomic orbital electron populations 1.22415 1.00053 0.98905 1.01371 1.20779 0.91703 0.87511 0.98781 1.43880 1.75817 1.08259 1.02298 1.19103 1.09060 1.17698 0.93396 0.91741 1.25141 0.94509 1.01414 0.97897 1.69996 1.07792 1.35584 1.39779 0.86421 0.77083 0.82027 0.82031 1.21287 1.21763 1.20344 1.20599 0.89271 0.99609 0.84327 0.87546 1.21978 1.00972 0.98272 0.99065 1.22189 0.90013 0.95127 0.94969 1.45926 1.13059 1.56599 1.18992 1.20188 0.83276 0.80065 0.86847 1.90666 1.80581 1.53552 1.18510 1.20238 0.91795 1.02197 0.95540 0.87438 1.21814 1.03103 0.99843 0.95027 1.19500 0.97758 0.91647 1.01182 1.20697 0.91916 0.98760 0.93080 1.21170 0.98938 0.96213 1.01918 1.17271 0.85201 0.93691 0.93425 1.91514 1.50649 1.96755 1.72458 1.20901 0.97736 0.99808 1.03017 1.17091 0.92279 0.82531 0.96662 1.91516 1.80780 1.51938 1.86541 0.94894 0.93161 0.93403 0.94412 0.94167 0.93486 0.94877 0.90957 0.94586 0.92893 0.93141 0.75057 0.91521 0.90375 0.91789 0.84029 0.84085 0.83598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 10.02 37.16 0.37 -2.42 16 2 C 0.14 2.65 5.82 -4.04 -0.02 2.63 16 3 N -0.58 -12.40 1.92 -165.65 -0.32 -12.72 16 4 C -0.26 -6.22 8.94 -15.06 -0.13 -6.35 16 5 H 0.06 1.53 7.89 -52.48 -0.41 1.12 16 6 C 0.01 0.26 4.87 -17.43 -0.08 0.18 16 7 N -0.89 -23.00 11.19 55.49 0.62 -22.38 16 8 Si 0.89 19.66 29.59 -169.99 -5.03 14.63 16 9 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 C 0.17 3.48 1.99 -67.93 -0.14 3.35 16 13 H 0.11 2.53 5.75 -51.93 -0.30 2.23 16 14 C -0.14 -2.81 9.07 37.16 0.34 -2.47 16 15 C 0.10 1.90 4.39 -4.04 -0.02 1.88 16 16 N -0.70 -12.02 4.45 -60.29 -0.27 -12.28 16 17 C 0.51 8.44 7.03 -10.99 -0.08 8.36 16 18 O -0.55 -10.58 15.13 5.56 0.08 -10.49 16 19 C -0.08 -1.02 2.88 -92.92 -0.27 -1.29 16 20 H 0.11 1.41 7.12 -51.93 -0.37 1.04 16 21 C -0.14 -1.61 8.90 37.16 0.33 -1.28 16 22 C -0.10 -1.29 4.40 -104.54 -0.46 -1.75 16 23 C -0.03 -0.31 7.93 -39.60 -0.31 -0.63 16 24 C -0.16 -1.75 10.02 -39.50 -0.40 -2.15 16 25 C 0.12 1.38 7.30 -39.43 -0.29 1.10 16 26 F -0.14 -1.51 17.27 2.25 0.04 -1.48 16 27 C -0.20 -2.19 10.01 -39.45 -0.39 -2.58 16 28 C 0.13 1.69 7.24 -39.43 -0.29 1.41 16 29 F -0.13 -1.70 16.19 2.25 0.04 -1.66 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.86 5.50 -51.93 -0.29 0.57 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.70 6.17 -51.93 -0.32 0.38 16 34 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.03 0.60 6.49 -51.93 -0.34 0.26 16 37 H 0.07 1.60 8.02 -51.93 -0.42 1.18 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 1.00 6.92 -51.93 -0.36 0.64 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.41 7.33 7.03 -40.82 -0.29 7.05 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 44 H 0.06 0.70 7.38 -51.93 -0.38 0.32 16 45 H 0.14 1.62 7.51 -52.49 -0.39 1.23 16 46 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 47 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -26.47 384.44 -7.66 -34.13 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.77 Total: 8.48 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.84 Total: -2.02 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.03 Total: -47.38 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -26.47 -7.66 -34.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157001018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.621 kcal (2) G-P(sol) polarization free energy of solvation -26.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds