Wall clock time and date at job start Tue Mar 31 2020 22:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47067 * 2 1 4 4 C 1.36934 * 120.00076 * 275.91195 * 3 2 1 5 5 H 1.08004 * 119.99668 * 34.07788 * 4 3 2 6 6 C 1.38811 * 120.00398 * 214.07374 * 4 3 2 7 7 N 1.31617 * 119.99519 * 17.04426 * 6 4 3 8 8 Si 1.86795 * 120.00395 * 197.04104 * 6 4 3 9 9 H 1.48501 * 109.47233 * 59.99795 * 8 6 4 10 10 H 1.48497 * 109.47334 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47083 * 300.00277 * 8 6 4 12 12 C 1.46508 * 120.00017 * 95.91064 * 3 2 1 13 13 H 1.09002 * 109.46969 * 177.14571 * 12 3 2 14 14 C 1.53000 * 109.46622 * 57.15114 * 12 3 2 15 15 C 1.53000 * 109.47299 * 297.14943 * 12 3 2 16 16 N 1.46497 * 109.47086 * 305.00061 * 15 12 3 17 17 C 1.34775 * 119.99915 * 180.02562 * 16 15 12 18 18 O 1.21280 * 120.00139 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00042 * 180.02562 * 17 16 15 20 20 C 1.52993 * 109.46950 * 179.97438 * 19 17 16 21 21 C 1.50706 * 109.46876 * 179.97438 * 20 19 17 22 22 C 1.38209 * 119.99901 * 264.72347 * 21 20 19 23 23 C 1.38432 * 119.99786 * 179.76959 * 22 21 20 24 24 F 1.35101 * 119.99914 * 180.27102 * 23 22 21 25 25 C 1.38467 * 119.99833 * 0.52864 * 23 22 21 26 26 C 1.38159 * 120.00275 * 359.72632 * 25 23 22 27 27 C 1.38424 * 119.99914 * 85.00084 * 21 20 19 28 28 F 1.35098 * 120.00268 * 359.97438 * 27 21 20 29 29 H 1.08994 * 109.47172 * 60.00449 * 1 2 3 30 30 H 1.09002 * 109.46783 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47070 * 299.99850 * 1 2 3 32 32 H 1.08998 * 109.47522 * 239.99545 * 2 1 3 33 33 H 1.09008 * 109.47311 * 119.99581 * 2 1 3 34 34 H 0.97005 * 120.00024 * 180.02562 * 7 6 4 35 35 H 1.09007 * 109.46609 * 179.97438 * 14 12 3 36 36 H 1.08994 * 109.47633 * 299.99495 * 14 12 3 37 37 H 1.08992 * 109.47541 * 60.00200 * 14 12 3 38 38 H 1.09001 * 109.46587 * 64.99923 * 15 12 3 39 39 H 1.08994 * 109.47331 * 184.99772 * 15 12 3 40 40 H 0.97003 * 120.00082 * 359.97438 * 16 15 12 41 41 H 1.09004 * 109.46664 * 299.99902 * 19 17 16 42 42 H 1.08994 * 109.47478 * 59.99359 * 19 17 16 43 43 H 1.08995 * 109.47540 * 299.99825 * 20 19 17 44 44 H 1.09001 * 109.47173 * 59.99767 * 20 19 17 45 45 H 1.07998 * 119.99934 * 0.02562 * 22 21 20 46 46 H 1.08003 * 120.00008 * 179.70050 * 25 23 22 47 47 H 1.07997 * 120.00170 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8926 -1.9760 6 6 3.1560 2.9880 -1.3517 7 7 4.1988 2.9695 -0.5488 8 14 3.0551 4.2527 -2.7226 9 1 1.8458 5.0934 -2.5325 10 1 4.2657 5.1121 -2.6934 11 1 2.9736 3.5574 -4.0324 12 6 2.3857 2.0283 1.2621 13 1 2.7712 3.0275 1.0593 14 6 3.4621 1.1994 1.9656 15 6 1.1518 2.1304 2.1610 16 7 0.0790 2.8210 1.4410 17 6 -1.1105 3.0272 2.0402 18 8 -1.2930 2.6407 3.1752 19 6 -2.2144 3.7372 1.2994 20 6 -3.4482 3.8393 2.1984 21 6 -4.5518 4.5498 1.4578 22 6 -4.7318 5.9099 1.6247 23 6 -5.7426 6.5634 0.9408 24 9 -5.9151 7.8938 1.0998 25 6 -6.5801 5.8524 0.0980 26 6 -6.4034 4.4918 -0.0648 27 6 -5.3888 3.8391 0.6149 28 9 -5.2160 2.5087 0.4557 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 4.9147 3.6130 -0.6687 35 1 3.7358 1.6811 2.9044 36 1 3.0767 0.2003 2.1684 37 1 4.3411 1.1267 1.3253 38 1 0.8190 1.1296 2.4362 39 1 1.4037 2.6901 3.0617 40 1 0.2249 3.1305 0.5334 41 1 -1.8816 4.7378 1.0234 42 1 -2.4666 3.1770 0.3992 43 1 -3.7808 2.8387 2.4741 44 1 -3.1962 4.3994 3.0989 45 1 -4.0814 6.4636 2.2855 46 1 -7.3717 6.3613 -0.4319 47 1 -7.0569 3.9372 -0.7219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157110030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:43 Heat of formation + Delta-G solvation = -97.262892 kcal Electronic energy + Delta-G solvation = -29977.874955 eV Core-core repulsion = 25603.774450 eV Total energy + Delta-G solvation = -4374.100504 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.21379 -49.12477 -39.60722 -38.96833 -36.94594 -34.24556 -33.60356 -31.91372 -31.20460 -30.67768 -29.70872 -28.18958 -26.13787 -24.27021 -23.93771 -23.22484 -21.78730 -21.49580 -19.73645 -19.19677 -17.92155 -17.52513 -17.48860 -17.03342 -16.46492 -16.07819 -15.60059 -15.51371 -15.27687 -14.75531 -14.69586 -14.51779 -14.39138 -13.88480 -13.65697 -13.40550 -13.14286 -12.94524 -12.76049 -12.67813 -12.48985 -12.31254 -11.99707 -11.84519 -11.81266 -11.53152 -11.25277 -11.07805 -11.05313 -10.99832 -10.81572 -10.68149 -10.33284 -10.08212 -9.65794 -9.57034 -9.45767 -9.30358 -8.80188 -8.53849 -8.36838 -6.67439 -5.90617 -3.40502 0.62349 0.68477 3.00958 3.08873 3.29368 3.36495 3.37728 3.71083 3.87756 3.90434 4.23951 4.38218 4.40019 4.65260 4.80126 4.98843 5.06438 5.23396 5.25204 5.37999 5.46852 5.58247 5.62359 5.64482 5.67907 5.73864 5.91309 6.04288 6.05343 6.06060 6.19695 6.26140 6.37549 6.47022 6.48120 6.52977 6.61186 6.66968 6.82026 6.90993 7.09075 7.15747 7.45775 7.54466 7.73706 8.17749 8.41836 8.75851 9.13813 9.75206 10.33122 11.15540 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.002956 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.661337 B = 9468.566979 C =10316.534706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.581 5.581 4 C -0.265 4.265 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.282 1.282 12 C 0.174 3.826 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.700 5.700 17 C 0.506 3.494 18 O -0.562 6.562 19 C -0.137 4.137 20 C -0.064 4.064 21 C -0.082 4.082 22 C -0.122 4.122 23 C 0.090 3.910 24 F -0.136 7.136 25 C -0.132 4.132 26 C -0.123 4.123 27 C 0.093 3.907 28 F -0.129 7.129 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.255 0.745 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.412 0.588 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.624 4.410 2.771 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.394 4.394 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.066 3.934 13 H 0.119 0.881 14 C -0.204 4.204 15 C -0.024 4.024 16 N -0.350 5.350 17 C 0.292 3.708 18 O -0.443 6.443 19 C -0.177 4.177 20 C -0.102 4.102 21 C -0.083 4.083 22 C -0.141 4.141 23 C 0.071 3.929 24 F -0.115 7.115 25 C -0.150 4.150 26 C -0.142 4.142 27 C 0.074 3.926 28 F -0.108 7.108 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.248 0.752 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.164 0.836 46 H 0.162 0.838 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.537 4.223 3.550 18.384 hybrid contribution 0.078 0.834 -1.285 1.534 sum -17.458 5.057 2.265 18.316 Atomic orbital electron populations 1.22419 1.00010 0.98971 1.01427 1.20771 0.91675 0.87483 0.98732 1.43858 1.75921 1.08253 1.02268 1.19044 1.07815 1.18842 0.93725 0.91949 1.25166 0.94471 1.01333 0.97781 1.69993 1.07218 1.36308 1.39712 0.86479 0.76984 0.81606 0.82288 1.20954 1.21675 1.20848 1.20529 0.89102 0.99427 0.84316 0.88054 1.22001 1.01072 0.98161 0.99124 1.22164 0.89260 0.95641 0.95310 1.45984 1.12291 1.57705 1.19032 1.20427 0.83657 0.79895 0.86815 1.90649 1.82010 1.52749 1.18851 1.21614 0.93841 1.02417 0.99827 1.20307 0.90793 1.01664 0.97436 1.19889 0.97441 0.93432 0.97546 1.20986 0.98276 0.93772 1.01075 1.17663 0.97766 0.77930 0.99553 1.91522 1.94902 1.30631 1.94425 1.20967 1.00513 0.93905 0.99662 1.20999 0.98151 0.94392 1.00655 1.17583 0.97438 0.78252 0.99357 1.91541 1.94846 1.30233 1.94144 0.93479 0.94859 0.93097 0.94155 0.94465 0.93472 0.94716 0.94985 0.90646 0.92933 0.93120 0.75164 0.88833 0.88823 0.89344 0.89315 0.83553 0.83827 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.95 37.16 0.37 -2.66 16 2 C 0.14 2.80 5.75 -4.04 -0.02 2.78 16 3 N -0.58 -12.87 1.88 -165.65 -0.31 -13.19 16 4 C -0.26 -6.46 9.07 -15.06 -0.14 -6.60 16 5 H 0.06 1.53 7.89 -52.48 -0.41 1.12 16 6 C 0.01 0.32 4.86 -17.43 -0.08 0.24 16 7 N -0.89 -23.35 10.90 55.49 0.61 -22.74 16 8 Si 0.90 20.01 29.59 -169.99 -5.03 14.98 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.17 3.66 1.95 -67.93 -0.13 3.53 16 13 H 0.10 2.43 5.94 -51.93 -0.31 2.13 16 14 C -0.14 -2.90 9.05 37.16 0.34 -2.57 16 15 C 0.10 1.94 4.36 -4.04 -0.02 1.92 16 16 N -0.70 -12.41 4.28 -60.30 -0.26 -12.67 16 17 C 0.51 8.47 7.78 -10.98 -0.09 8.38 16 18 O -0.56 -11.01 15.98 5.56 0.09 -10.92 16 19 C -0.14 -1.76 5.68 -27.88 -0.16 -1.91 16 20 C -0.06 -0.75 4.41 -27.88 -0.12 -0.88 16 21 C -0.08 -0.85 5.14 -104.56 -0.54 -1.39 16 22 C -0.12 -1.15 9.66 -39.52 -0.38 -1.53 16 23 C 0.09 0.84 7.30 -39.43 -0.29 0.55 16 24 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 25 C -0.13 -1.04 10.02 -39.53 -0.40 -1.43 16 26 C -0.12 -1.02 10.02 -39.52 -0.40 -1.41 16 27 C 0.09 0.97 7.24 -39.42 -0.29 0.68 16 28 F -0.13 -1.54 16.57 2.25 0.04 -1.50 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.94 5.32 -51.93 -0.28 0.66 16 32 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.04 0.72 6.29 -51.92 -0.33 0.39 16 34 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.60 6.56 -51.93 -0.34 0.26 16 37 H 0.07 1.72 7.69 -51.93 -0.40 1.32 16 38 H 0.05 1.03 6.98 -51.93 -0.36 0.67 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.41 7.51 7.74 -40.82 -0.32 7.19 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.09 1.14 7.75 -51.93 -0.40 0.74 16 44 H 0.09 1.02 8.01 -51.93 -0.42 0.60 16 45 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 47 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 389.61 15.07 5.87 5.87 Total: -1.00 -27.55 389.61 -8.22 -35.77 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.92 Total: 8.02 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.34 Total: -2.31 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.04 Total: -48.60 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.83 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.55 -8.22 -35.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157110030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.490 kcal (2) G-P(sol) polarization free energy of solvation -27.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds