Wall clock time and date at job start Tue Mar 31 2020 23:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20761 * 120.00230 * 2 1 4 4 C 1.50703 * 120.00266 * 180.02562 * 2 1 3 5 5 H 1.08992 * 110.78139 * 31.75798 * 4 2 1 6 6 C 1.55162 * 110.71698 * 268.51963 * 4 2 1 7 7 C 1.55127 * 101.48379 * 205.96988 * 6 4 2 8 8 N 1.47423 * 104.72458 * 37.29587 * 7 6 4 9 9 C 1.34779 * 125.64694 * 155.81971 * 8 7 6 10 10 O 1.21279 * 119.99603 * 179.69092 * 9 8 7 11 11 C 1.50699 * 120.00276 * 359.69015 * 9 8 7 12 12 H 1.09003 * 109.47266 * 59.99612 * 11 9 8 13 13 C 1.50704 * 109.47108 * 300.00494 * 11 9 8 14 14 H 1.08001 * 119.99866 * 305.38151 * 13 11 9 15 15 C 1.37878 * 120.00327 * 125.38093 * 13 11 9 16 16 N 1.31514 * 119.99950 * 178.76409 * 15 13 11 17 17 Si 1.86798 * 119.99727 * 358.76750 * 15 13 11 18 18 H 1.48495 * 109.47149 * 85.01017 * 17 15 13 19 19 H 1.48503 * 109.46865 * 205.00924 * 17 15 13 20 20 H 1.48493 * 109.47297 * 325.00712 * 17 15 13 21 21 N 1.46494 * 109.47289 * 180.02562 * 11 9 8 22 22 C 1.34782 * 119.99917 * 208.58332 * 21 11 9 23 23 O 1.21506 * 119.99971 * 0.27473 * 22 21 11 24 24 O 1.34637 * 119.99889 * 180.27606 * 22 21 11 25 25 C 1.45198 * 116.99996 * 180.02562 * 24 22 21 26 26 C 1.53004 * 109.47138 * 59.99808 * 25 24 22 27 27 C 1.53000 * 109.47337 * 179.97438 * 25 24 22 28 28 C 1.53005 * 109.46934 * 299.99849 * 25 24 22 29 29 C 1.47022 * 108.70232 * 335.55212 * 8 7 6 30 30 H 1.09007 * 109.46877 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47089 * 299.99417 * 1 2 3 32 32 H 1.08995 * 109.47547 * 60.00172 * 1 2 3 33 33 H 1.08994 * 111.00221 * 324.20505 * 6 4 2 34 34 H 1.08999 * 111.00486 * 88.02268 * 6 4 2 35 35 H 1.09004 * 110.49495 * 278.45149 * 7 6 4 36 36 H 1.09002 * 110.34312 * 156.06326 * 7 6 4 37 37 H 0.96998 * 119.99969 * 180.02562 * 16 15 13 38 38 H 0.96995 * 120.00030 * 28.86120 * 21 11 9 39 39 H 1.08998 * 109.46713 * 59.99883 * 26 25 24 40 40 H 1.08997 * 109.46989 * 179.97438 * 26 25 24 41 41 H 1.09004 * 109.46796 * 299.99882 * 26 25 24 42 42 H 1.09007 * 109.46910 * 59.99822 * 27 25 24 43 43 H 1.08997 * 109.47511 * 179.97438 * 27 25 24 44 44 H 1.08998 * 109.47146 * 300.00504 * 27 25 24 45 45 H 1.09005 * 109.47081 * 60.00123 * 28 25 24 46 46 H 1.08998 * 109.46493 * 179.97438 * 28 25 24 47 47 H 1.08998 * 109.46878 * 300.00083 * 28 25 24 48 48 H 1.08999 * 109.87998 * 120.70307 * 29 8 7 49 49 H 1.09000 * 109.88308 * 241.71495 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7035 -2.0730 -0.5373 6 6 2.5675 -1.7623 1.4500 7 6 3.8333 -2.6336 1.2379 8 7 4.5965 -1.9361 0.1871 9 6 5.9260 -2.0320 -0.0129 10 8 6.4494 -1.4143 -0.9159 11 6 6.7620 -2.9066 0.8855 12 1 6.4108 -3.9364 0.8193 13 6 6.6416 -2.4255 2.3086 14 1 6.8617 -1.3964 2.5511 15 6 6.2504 -3.2991 3.3010 16 7 6.1689 -2.8854 4.5466 17 14 5.8364 -5.0704 2.8760 18 1 7.0823 -5.8782 2.8533 19 1 4.9085 -5.6203 3.8967 20 1 5.1894 -5.1208 1.5404 21 7 8.1637 -2.8402 0.4649 22 6 8.9822 -3.8893 0.6797 23 8 8.5561 -4.8920 1.2177 24 8 10.2718 -3.8261 0.2982 25 6 11.0948 -4.9932 0.5607 26 6 10.5093 -6.2044 -0.1681 27 6 12.5179 -4.7367 0.0607 28 6 11.1242 -5.2685 2.0655 29 6 3.6664 -1.1235 -0.6105 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.7805 -0.9078 2.0921 34 1 1.7482 -2.3572 1.8538 35 1 3.5566 -3.6341 0.9051 36 1 4.4154 -2.6865 2.1579 37 1 5.8941 -3.5001 5.2448 38 1 8.5038 -2.0397 0.0355 39 1 10.4883 -6.0082 -1.2400 40 1 11.1274 -7.0804 0.0286 41 1 9.4954 -6.3874 0.1878 42 1 12.9352 -3.8736 0.5796 43 1 13.1358 -5.6126 0.2581 44 1 12.4965 -4.5407 -1.0113 45 1 10.1102 -5.4515 2.4213 46 1 11.7417 -6.1449 2.2624 47 1 11.5413 -4.4056 2.5846 48 1 3.9578 -0.0742 -0.5646 49 1 3.6707 -1.4643 -1.6459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180781762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:42 Heat of formation + Delta-G solvation = -145.682026 kcal Electronic energy + Delta-G solvation = -31571.101342 eV Core-core repulsion = 27305.988742 eV Total energy + Delta-G solvation = -4265.112600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27432 -39.97873 -38.88738 -36.93875 -36.30123 -34.11254 -33.60953 -32.40705 -31.91693 -29.99939 -29.07797 -27.94341 -27.17657 -27.05575 -24.42263 -23.05528 -21.95910 -21.25839 -19.41795 -19.23243 -18.85826 -17.98476 -17.14895 -16.60837 -16.22259 -16.03316 -15.39701 -15.20500 -14.96817 -14.87408 -14.75412 -14.34332 -14.09002 -13.90230 -13.49621 -13.37102 -13.08008 -12.96951 -12.57107 -12.48297 -12.37261 -12.29306 -12.07326 -11.97924 -11.90934 -11.69638 -11.58227 -11.44486 -11.31999 -11.20672 -11.02213 -10.90617 -10.83629 -10.46645 -10.11095 -9.93590 -9.80006 -9.62586 -9.22781 -9.21370 -8.70248 -8.12048 -7.97639 -6.39970 -4.49079 1.86612 2.80736 3.19183 3.27621 3.40805 3.52364 3.56093 3.77087 4.04490 4.24845 4.55074 4.66844 4.78590 4.91634 5.02206 5.04656 5.13152 5.14908 5.21841 5.24314 5.32900 5.50229 5.55099 5.64634 5.68841 5.74168 5.76081 5.88966 5.90230 5.93488 5.98713 6.00965 6.16076 6.16276 6.19605 6.28857 6.33153 6.48142 6.58849 6.72606 6.88333 7.08404 7.14567 7.37450 7.44350 8.04716 8.13208 8.39653 8.62951 8.88395 9.16021 9.30308 10.68105 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.003436 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.910468 B = 8146.832327 C = 9072.177772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.365 3.635 3 O -0.451 6.451 4 C -0.157 4.157 5 H 0.108 0.892 6 C -0.113 4.113 7 C 0.080 3.920 8 N -0.604 5.604 9 C 0.541 3.459 10 O -0.566 6.566 11 C 0.231 3.769 12 H 0.087 0.913 13 C -0.524 4.524 14 H 0.083 0.917 15 C 0.093 3.907 16 N -0.869 5.869 17 Si 0.876 3.124 18 H -0.242 1.242 19 H -0.294 1.294 20 H -0.268 1.268 21 N -0.685 5.685 22 C 0.649 3.351 23 O -0.574 6.574 24 O -0.372 6.372 25 C 0.136 3.864 26 C -0.182 4.182 27 C -0.138 4.138 28 C -0.183 4.183 29 C 0.116 3.884 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.272 0.728 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -3.629 -7.084 9.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.240 3.760 3 O -0.324 6.324 4 C -0.177 4.177 5 H 0.126 0.874 6 C -0.151 4.151 7 C -0.042 4.042 8 N -0.338 5.338 9 C 0.331 3.669 10 O -0.446 6.446 11 C 0.128 3.872 12 H 0.105 0.895 13 C -0.563 4.563 14 H 0.101 0.899 15 C -0.115 4.115 16 N -0.504 5.504 17 Si 0.703 3.297 18 H -0.166 1.166 19 H -0.221 1.221 20 H -0.194 1.194 21 N -0.343 5.343 22 C 0.402 3.598 23 O -0.464 6.464 24 O -0.288 6.288 25 C 0.099 3.901 26 C -0.239 4.239 27 C -0.195 4.195 28 C -0.240 4.240 29 C -0.007 4.007 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.082 0.918 38 H 0.232 0.768 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.416 -3.321 -7.118 9.011 hybrid contribution -0.180 -0.649 -0.209 0.705 sum -4.595 -3.971 -7.327 9.516 Atomic orbital electron populations 1.22246 0.94125 1.04674 1.04691 1.24407 0.91834 0.89692 0.70097 1.90433 1.71829 1.34888 1.35213 1.22910 0.97029 0.97748 0.99999 0.87398 1.22771 0.98276 1.00826 0.93243 1.22962 0.92288 0.94178 0.94823 1.47999 1.06168 1.47019 1.32569 1.21028 0.80560 0.82206 0.83085 1.90580 1.71334 1.48586 1.34099 1.18899 0.77581 0.97199 0.93519 0.89520 1.20881 1.47799 0.99356 0.88227 0.89863 1.25086 0.93274 0.98567 0.94545 1.69896 1.43912 1.36395 1.00165 0.86938 0.80101 0.85495 0.77208 1.16616 1.22107 1.19402 1.45459 1.10129 1.16093 1.62595 1.18085 0.79919 0.83926 0.77879 1.90839 1.75991 1.31866 1.47714 1.86287 1.21262 1.43384 1.77854 1.21876 0.89097 0.83344 0.95772 1.22504 1.04277 0.96905 1.00186 1.21826 0.93255 1.02534 1.01916 1.22505 1.05379 1.01555 0.94546 1.21760 0.86604 0.97653 0.94655 0.89912 0.88979 0.89057 0.89791 0.89370 0.92057 0.85628 0.91811 0.76801 0.92580 0.91827 0.89167 0.91662 0.90722 0.91818 0.88857 0.91976 0.92294 0.90166 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 10.33 36.00 0.37 -1.10 16 2 C 0.37 4.33 6.44 -29.04 -0.19 4.14 16 3 O -0.45 -7.29 16.36 6.00 0.10 -7.19 16 4 C -0.16 -1.92 3.19 -89.93 -0.29 -2.21 16 5 H 0.11 0.97 8.13 -51.93 -0.42 0.55 16 6 C -0.11 -1.53 6.53 -24.46 -0.16 -1.69 16 7 C 0.08 1.42 5.75 -2.41 -0.01 1.41 16 8 N -0.60 -11.93 3.32 -170.38 -0.57 -12.49 16 9 C 0.54 12.35 7.27 -10.98 -0.08 12.27 16 10 O -0.57 -13.72 16.22 5.56 0.09 -13.63 16 11 C 0.23 5.50 1.97 -70.24 -0.14 5.36 16 12 H 0.09 2.12 3.96 -51.93 -0.21 1.91 16 13 C -0.52 -13.69 7.57 -34.44 -0.26 -13.95 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 15 C 0.09 2.44 4.23 -17.82 -0.08 2.36 16 16 N -0.87 -24.01 13.96 55.43 0.77 -23.24 16 17 Si 0.88 20.59 23.79 -169.99 -4.04 16.54 16 18 H -0.24 -6.08 6.33 56.52 0.36 -5.72 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -5.91 5.93 56.52 0.34 -5.58 16 21 N -0.68 -15.62 4.88 -61.01 -0.30 -15.91 16 22 C 0.65 14.46 8.05 54.06 0.43 14.89 16 23 O -0.57 -13.61 8.76 -19.28 -0.17 -13.78 16 24 O -0.37 -7.26 9.94 -40.31 -0.40 -7.66 16 25 C 0.14 2.19 1.13 -90.62 -0.10 2.08 16 26 C -0.18 -2.74 8.37 37.16 0.31 -2.43 16 27 C -0.14 -1.68 8.85 37.16 0.33 -1.35 16 28 C -0.18 -2.99 8.37 37.16 0.31 -2.68 16 29 C 0.12 1.92 6.41 -3.06 -0.02 1.90 16 30 H 0.08 0.43 7.99 -51.92 -0.41 0.01 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 36 H 0.13 2.65 3.59 -51.93 -0.19 2.47 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.40 8.66 8.01 -40.82 -0.33 8.33 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 1.63 5.88 -51.93 -0.31 1.32 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.86 5.88 -51.93 -0.31 1.56 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.08 1.50 6.78 -51.93 -0.35 1.15 16 49 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 383.02 15.07 5.77 5.77 Total: -1.00 -32.67 383.02 -5.97 -38.63 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -7.66 Total: 13.95 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: 0.43 Total: 19.00 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.09 Total: -51.64 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.38 Total: -42.26 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.04 Total: 16.54 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.67 -5.97 -38.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180781762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.050 kcal (2) G-P(sol) polarization free energy of solvation -32.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds